CSPI02G02570 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G02570
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Light-dependent short hypocotyls protein
Location	Chr2 : 1778270 .. 1779087 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTTATGGTCTCCTCTCATTTAAATTGTTGTTGTTGATCTTCTTGATCATCTCTTTTTTGCCATGCAGATTAAAACCCATTTCTTAGTTTTTCTTCTCTTTTGGAACAAAAAACCCTAAAATAATAAGTGGGTTTCTCTTCAAAACCCTAAAAGATGAAATCTTTCTCACATCGGCCATAACCAAAAGTTTCAATCTTTTACAAACATTTTCCTCCCCATTTTTCATCTTTCCGATTAATTAAACAATGGATTTGTTTTCAGAATCATCATCCAATAATAGTACTCCCACCACCACCACTACCACTACAACACCACCCACCGCCACCACCACCACTGCTGCCTCTGCCACCACACCAAGCCGGTACGAGAATCAAAAAAGGAGAGATTGGAACACGTTTTGTCAATACCTCCGGAACCACCGGCCACCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGGTACTTAGATCAGTTCGGTAAGACAAAAGTACACAACCAAACCTGTCCGTTCTTTGGCCTGCCCAACCCCCCTGCCCCCTGTCCGTGCCCGTTGAGACAAGCGTGGGGCAGCTTAGACGCTCTCATCGGCCGGCTTCGGGCAGCTTACGAAGAGAACGGTGGTCGGGCGGAGGGAAATCCTTTCGGAGCAAGAGCGGTTCGGTTGTACTTAAGGGAAGTTCGTGATTTTCAAGCGAAAGCAAGAGGTGTTAGTTACGAGAAGAAGAGAAAAAGGCCTAAGCAAAAAATTAATACTTCTTCAACTACTACTCACGATCATCATCAAGATTCTACTACTTGA

mRNA sequence

ATGGATTTGTTTTCAGAATCATCATCCAATAATAGTACTCCCACCACCACCACTACCACTACAACACCACCCACCGCCACCACCACCACTGCTGCCTCTGCCACCACACCAAGCCGGTACGAGAATCAAAAAAGGAGAGATTGGAACACGTTTTGTCAATACCTCCGGAACCACCGGCCACCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGGTACTTAGATCAGTTCGGTAAGACAAAAGTACACAACCAAACCTGTCCGTTCTTTGGCCTGCCCAACCCCCCTGCCCCCTGTCCGTGCCCGTTGAGACAAGCGTGGGGCAGCTTAGACGCTCTCATCGGCCGGCTTCGGGCAGCTTACGAAGAGAACGGTGGTCGGGCGGAGGGAAATCCTTTCGGAGCAAGAGCGGTTCGGTTGTACTTAAGGGAAGTTCGTGATTTTCAAGCGAAAGCAAGAGGTGTTAGTTACGAGAAGAAGAGAAAAAGGCCTAAGCAAAAAATTAATACTTCTTCAACTACTACTCACGATCATCATCAAGATTCTACTACTTGA

Coding sequence (CDS)

ATGGATTTGTTTTCAGAATCATCATCCAATAATAGTACTCCCACCACCACCACTACCACTACAACACCACCCACCGCCACCACCACCACTGCTGCCTCTGCCACCACACCAAGCCGGTACGAGAATCAAAAAAGGAGAGATTGGAACACGTTTTGTCAATACCTCCGGAACCACCGGCCACCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGGTACTTAGATCAGTTCGGTAAGACAAAAGTACACAACCAAACCTGTCCGTTCTTTGGCCTGCCCAACCCCCCTGCCCCCTGTCCGTGCCCGTTGAGACAAGCGTGGGGCAGCTTAGACGCTCTCATCGGCCGGCTTCGGGCAGCTTACGAAGAGAACGGTGGTCGGGCGGAGGGAAATCCTTTCGGAGCAAGAGCGGTTCGGTTGTACTTAAGGGAAGTTCGTGATTTTCAAGCGAAAGCAAGAGGTGTTAGTTACGAGAAGAAGAGAAAAAGGCCTAAGCAAAAAATTAATACTTCTTCAACTACTACTCACGATCATCATCAAGATTCTACTACTTGA

Homology

[Close]

BLAST of CSPI02G02570 vs. Swiss-Prot
Match: LSH1_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana GN=LSH1 PE=1 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.1e-66
Identity = 129/168 (76.79%), Postives = 138/168 (82.14%), Query Frame = 1


Query: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60
           MDL S   + N     ++T  TPP++           SRYENQKRRDWNTFCQYLRNHRP
Sbjct: 1   MDLISHQPNKNPN---SSTQLTPPSS-----------SRYENQKRRDWNTFCQYLRNHRP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PL+L  CSGAHVLEFLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKR 169
           RLRAAYEENGG  E NPFG+RAVRL+LREVRDFQAKARGVSYEKKRKR
Sbjct: 121 RLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKR 154

[Close]

BLAST of CSPI02G02570 vs. Swiss-Prot
Match: LSH2_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana GN=LSH2 PE=1 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 7.2e-66
Identity = 129/177 (72.88%), Postives = 146/177 (82.49%), Query Frame = 1


Query: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60
           MDL S++  NN  P T+ +T TP     ++ +S  + SRYENQKRRDWNTFCQYLRNH P
Sbjct: 1   MDLISQNH-NNRNPNTSLSTQTP-----SSFSSPPSSSRYENQKRRDWNTFCQYLRNHHP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PL+L  CSGAHVL+FLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSS 178
           RLRAAYEENGG  E +PFG+R+VR++LREVRDFQAK+RGVSYEKKRKR   K  T S
Sbjct: 121 RLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQS 171

[Close]

BLAST of CSPI02G02570 vs. Swiss-Prot
Match: G1L3_ORYSI (Protein G1-like3 OS=Oryza sativa subsp. indica GN=OsI_05696 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.6e-65
Identity = 119/153 (77.78%), Postives = 128/153 (83.66%), Query Frame = 1


Query: 31  AASATTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQ 90
           AA+  TPSRYE QKRRDWNTF QYLRNHRPPL L  CSGAHVLEFLRYLDQFGKTKVH  
Sbjct: 65  AATPQTPSRYEAQKRRDWNTFGQYLRNHRPPLGLAQCSGAHVLEFLRYLDQFGKTKVHTA 124

Query: 91  TCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREV 150
            CPFFG PNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGGR E NPF  RAVRLYLREV
Sbjct: 125 ACPFFGHPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAVRAVRLYLREV 184

Query: 151 RDFQAKARGVSYEKKRKRPKQKINTSSTTTHDH 184
           R+ QA+ARGVSYEKK+++  Q  +TS    H H
Sbjct: 185 REHQARARGVSYEKKKRKKPQPADTSGGGGHPH 217

[Close]

BLAST of CSPI02G02570 vs. Swiss-Prot
Match: G1L3_ORYSJ (Protein G1-like3 OS=Oryza sativa subsp. japonica GN=G1L3 PE=1 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.6e-65
Identity = 119/153 (77.78%), Postives = 128/153 (83.66%), Query Frame = 1


Query: 31  AASATTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQ 90
           AA+  TPSRYE QKRRDWNTF QYLRNHRPPL L  CSGAHVLEFLRYLDQFGKTKVH  
Sbjct: 65  AATPQTPSRYEAQKRRDWNTFGQYLRNHRPPLGLAQCSGAHVLEFLRYLDQFGKTKVHTA 124

Query: 91  TCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREV 150
            CPFFG PNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGGR E NPF  RAVRLYLREV
Sbjct: 125 ACPFFGHPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAVRAVRLYLREV 184

Query: 151 RDFQAKARGVSYEKKRKRPKQKINTSSTTTHDH 184
           R+ QA+ARGVSYEKK+++  Q  +TS    H H
Sbjct: 185 REHQARARGVSYEKKKRKKPQPADTSGGGGHPH 217

[Close]

BLAST of CSPI02G02570 vs. Swiss-Prot
Match: G1L5_ORYSJ (Protein G1-like5 OS=Oryza sativa subsp. japonica GN=G1L5 PE=1 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.4e-64
Identity = 122/158 (77.22%), Postives = 133/158 (84.18%), Query Frame = 1


Query: 25  TATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGK 84
           T  T+ +A+  +PSRYE+QKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLDQFGK
Sbjct: 26  TGATSASAAGASPSRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGK 85

Query: 85  TKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVR 144
           TKVH   CPFFG P PPAPCPCPLRQAWGSLDAL+GRLRAAYEENGGR E NPFGARAVR
Sbjct: 86  TKVHAPACPFFGHPAPPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVR 145

Query: 145 LYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTTHD 183
           LYLREVR+ QA+ARGVSYEKK KR K    +S+   HD
Sbjct: 146 LYLREVREHQARARGVSYEKK-KRKKPPHPSSAAAAHD 182

[Close]

BLAST of CSPI02G02570 vs. TrEMBL
Match: A0A0A0LG60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009550 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 2.8e-101
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1


Query: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60
           MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP
Sbjct: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180
           RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT
Sbjct: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180

Query: 181 HDHHQDSTT 190
           HDHHQDSTT
Sbjct: 181 HDHHQDSTT 189

[Close]

BLAST of CSPI02G02570 vs. TrEMBL
Match: A0A061F1I7_THECC (Uncharacterized protein isoform 4 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 6.3e-77
Identity = 146/170 (85.88%), Postives = 156/170 (91.76%), Query Frame = 1


Query: 8   SSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRPPLALQMC 67
           SS+  TPT+ TTTTTPP        ++TTPSRYENQKRRDWNTFCQYLRNHRPPL+L MC
Sbjct: 36  SSSTVTPTSGTTTTTPP--------ASTTPSRYENQKRRDWNTFCQYLRNHRPPLSLSMC 95

Query: 68  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 127
           SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE
Sbjct: 96  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 155

Query: 128 ENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSS 178
           E+GGR EGNPFGARAVR+YLREVRDFQAKARGVSYEKKRKRPKQK+ +S+
Sbjct: 156 EHGGRPEGNPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPKQKVASSA 197

[Close]

BLAST of CSPI02G02570 vs. TrEMBL
Match: A0A061F0P9_THECC (Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 6.3e-77
Identity = 146/170 (85.88%), Postives = 156/170 (91.76%), Query Frame = 1


Query: 8   SSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRPPLALQMC 67
           SS+  TPT+ TTTTTPP        ++TTPSRYENQKRRDWNTFCQYLRNHRPPL+L MC
Sbjct: 36  SSSTVTPTSGTTTTTPP--------ASTTPSRYENQKRRDWNTFCQYLRNHRPPLSLSMC 95

Query: 68  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 127
           SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE
Sbjct: 96  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 155

Query: 128 ENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSS 178
           E+GGR EGNPFGARAVR+YLREVRDFQAKARGVSYEKKRKRPKQK+ +S+
Sbjct: 156 EHGGRPEGNPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPKQKVASSA 197

[Close]

BLAST of CSPI02G02570 vs. TrEMBL
Match: A0A061F8S7_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 6.3e-77
Identity = 146/170 (85.88%), Postives = 156/170 (91.76%), Query Frame = 1


Query: 8   SSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRPPLALQMC 67
           SS+  TPT+ TTTTTPP        ++TTPSRYENQKRRDWNTFCQYLRNHRPPL+L MC
Sbjct: 36  SSSTVTPTSGTTTTTPP--------ASTTPSRYENQKRRDWNTFCQYLRNHRPPLSLSMC 95

Query: 68  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 127
           SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE
Sbjct: 96  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 155

Query: 128 ENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSS 178
           E+GGR EGNPFGARAVR+YLREVRDFQAKARGVSYEKKRKRPKQK+ +S+
Sbjct: 156 EHGGRPEGNPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPKQKVASSA 197

[Close]

BLAST of CSPI02G02570 vs. TrEMBL
Match: A0A061F1X4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 6.3e-77
Identity = 146/170 (85.88%), Postives = 156/170 (91.76%), Query Frame = 1


Query: 8   SSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRPPLALQMC 67
           SS+  TPT+ TTTTTPP        ++TTPSRYENQKRRDWNTFCQYLRNHRPPL+L MC
Sbjct: 36  SSSTVTPTSGTTTTTPP--------ASTTPSRYENQKRRDWNTFCQYLRNHRPPLSLSMC 95

Query: 68  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 127
           SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE
Sbjct: 96  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 155

Query: 128 ENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSS 178
           E+GGR EGNPFGARAVR+YLREVRDFQAKARGVSYEKKRKRPKQK+ +S+
Sbjct: 156 EHGGRPEGNPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPKQKVASSA 197

[Close]

BLAST of CSPI02G02570 vs. TAIR10
Match: AT5G28490.1 (AT5G28490.1 Protein of unknown function (DUF640))

HSP 1 Score: 254.2 bits (648), Expect = 6.3e-68
Identity = 129/168 (76.79%), Postives = 138/168 (82.14%), Query Frame = 1


Query: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60
           MDL S   + N     ++T  TPP++           SRYENQKRRDWNTFCQYLRNHRP
Sbjct: 1   MDLISHQPNKNPN---SSTQLTPPSS-----------SRYENQKRRDWNTFCQYLRNHRP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PL+L  CSGAHVLEFLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKR 169
           RLRAAYEENGG  E NPFG+RAVRL+LREVRDFQAKARGVSYEKKRKR
Sbjct: 121 RLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKR 154

[Close]

BLAST of CSPI02G02570 vs. TAIR10
Match: AT3G04510.1 (AT3G04510.1 Protein of unknown function (DUF640))

HSP 1 Score: 251.5 bits (641), Expect = 4.1e-67
Identity = 129/177 (72.88%), Postives = 146/177 (82.49%), Query Frame = 1


Query: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60
           MDL S++  NN  P T+ +T TP     ++ +S  + SRYENQKRRDWNTFCQYLRNH P
Sbjct: 1   MDLISQNH-NNRNPNTSLSTQTP-----SSFSSPPSSSRYENQKRRDWNTFCQYLRNHHP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PL+L  CSGAHVL+FLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSS 178
           RLRAAYEENGG  E +PFG+R+VR++LREVRDFQAK+RGVSYEKKRKR   K  T S
Sbjct: 121 RLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQS 171

[Close]

BLAST of CSPI02G02570 vs. TAIR10
Match: AT2G31160.1 (AT2G31160.1 Protein of unknown function (DUF640))

HSP 1 Score: 240.4 bits (612), Expect = 9.4e-64
Identity = 127/178 (71.35%), Postives = 142/178 (79.78%), Query Frame = 1


Query: 9   SNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCS 68
           SNNS+  T  T        +++++ +   SRYENQKRRDWNTF QYLRNHRPPL+L  CS
Sbjct: 24  SNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCS 83

Query: 69  GAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE 128
           GAHVLEFLRYLDQFGKTKVH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EE
Sbjct: 84  GAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE 143

Query: 129 NGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRPKQKINTSSTTTHDHHQ 186
           NGG+ E NPFGARAVRLYLREVRD Q+KARGVSYE KKRKRP    +TSS++    HQ
Sbjct: 144 NGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSSSAVASHQ 201

[Close]

BLAST of CSPI02G02570 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 238.0 bits (606), Expect = 4.6e-63
Identity = 125/164 (76.22%), Postives = 136/164 (82.93%), Query Frame = 1


Query: 8   SSNNSTPTTTTTTTTPPTATTTTAASATTP-SRYENQKRRDWNTFCQYLRNHRPPLALQM 67
           ++N       TTTTT  ++++++  S T   SRYENQKRRDWNTF QYLRNHRPPL+L  
Sbjct: 16  NTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSR 75

Query: 68  CSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAY 127
           CSGAHVLEFLRYLDQFGKTKVH   CPFFG PNPPAPC CPLRQAWGSLDALIGRLRAA+
Sbjct: 76  CSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAF 135

Query: 128 EENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRP 170
           EENGG  E NPFGARAVRLYLREVRD QAKARG+SYE KKRKRP
Sbjct: 136 EENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of CSPI02G02570 vs. TAIR10
Match: AT1G07090.1 (AT1G07090.1 Protein of unknown function (DUF640))

HSP 1 Score: 231.1 bits (588), Expect = 5.7e-61
Identity = 107/135 (79.26%), Postives = 119/135 (88.15%), Query Frame = 1


Query: 36  TPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFF 95
           TPSRYE+QKRRDWNTF QYL+NH+PPLAL  CSGAHV+EFL+YLDQFGKTKVH   CP+F
Sbjct: 28  TPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYF 87

Query: 96  GLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQA 155
           G   PP+PC CPL+QAWGSLDALIGRLRAAYEENGGR + NPF ARAVR+YLREVR+ QA
Sbjct: 88  GHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQA 147

Query: 156 KARGVSYE-KKRKRP 170
           KARG+ YE KKRKRP
Sbjct: 148 KARGIPYEKKKRKRP 162

[Close]

BLAST of CSPI02G02570 vs. NCBI nr
Match: gi|778666389|ref|XP_011648733.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis sativus])

HSP 1 Score: 375.9 bits (964), Expect = 4.1e-101
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1


Query: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60
           MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP
Sbjct: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180
           RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT
Sbjct: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180

Query: 181 HDHHQDSTT 190
           HDHHQDSTT
Sbjct: 181 HDHHQDSTT 189

[Close]

BLAST of CSPI02G02570 vs. NCBI nr
Match: gi|659070745|ref|XP_008456451.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo])

HSP 1 Score: 369.0 bits (946), Expect = 5.0e-99
Identity = 185/189 (97.88%), Postives = 186/189 (98.41%), Query Frame = 1


Query: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60
           MDLFSESSSNN  PTTTTTTTTPPTATT+ AASATTPSRYENQKRRDWNTFCQYLRNHRP
Sbjct: 1   MDLFSESSSNNDNPTTTTTTTTPPTATTSAAASATTPSRYENQKRRDWNTFCQYLRNHRP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180
           RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT
Sbjct: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180

Query: 181 HDHHQDSTT 190
           HDHHQDSTT
Sbjct: 181 HDHHQDSTT 189

[Close]

BLAST of CSPI02G02570 vs. NCBI nr
Match: gi|590642085|ref|XP_007030416.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 295.0 bits (754), Expect = 9.1e-77
Identity = 146/170 (85.88%), Postives = 156/170 (91.76%), Query Frame = 1


Query: 8   SSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRPPLALQMC 67
           SS+  TPT+ TTTTTPP        ++TTPSRYENQKRRDWNTFCQYLRNHRPPL+L MC
Sbjct: 36  SSSTVTPTSGTTTTTPP--------ASTTPSRYENQKRRDWNTFCQYLRNHRPPLSLSMC 95

Query: 68  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 127
           SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE
Sbjct: 96  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 155

Query: 128 ENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSS 178
           E+GGR EGNPFGARAVR+YLREVRDFQAKARGVSYEKKRKRPKQK+ +S+
Sbjct: 156 EHGGRPEGNPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPKQKVASSA 197

[Close]

BLAST of CSPI02G02570 vs. NCBI nr
Match: gi|590642089|ref|XP_007030417.1| (Uncharacterized protein isoform 2 [Theobroma cacao])

HSP 1 Score: 295.0 bits (754), Expect = 9.1e-77
Identity = 146/170 (85.88%), Postives = 156/170 (91.76%), Query Frame = 1


Query: 8   SSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRPPLALQMC 67
           SS+  TPT+ TTTTTPP        ++TTPSRYENQKRRDWNTFCQYLRNHRPPL+L MC
Sbjct: 36  SSSTVTPTSGTTTTTPP--------ASTTPSRYENQKRRDWNTFCQYLRNHRPPLSLSMC 95

Query: 68  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 127
           SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE
Sbjct: 96  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 155

Query: 128 ENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSS 178
           E+GGR EGNPFGARAVR+YLREVRDFQAKARGVSYEKKRKRPKQK+ +S+
Sbjct: 156 EHGGRPEGNPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPKQKVASSA 197

[Close]

BLAST of CSPI02G02570 vs. NCBI nr
Match: gi|590642098|ref|XP_007030419.1| (Uncharacterized protein isoform 4 [Theobroma cacao])

HSP 1 Score: 295.0 bits (754), Expect = 9.1e-77
Identity = 146/170 (85.88%), Postives = 156/170 (91.76%), Query Frame = 1


Query: 8   SSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRPPLALQMC 67
           SS+  TPT+ TTTTTPP        ++TTPSRYENQKRRDWNTFCQYLRNHRPPL+L MC
Sbjct: 36  SSSTVTPTSGTTTTTPP--------ASTTPSRYENQKRRDWNTFCQYLRNHRPPLSLSMC 95

Query: 68  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 127
           SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE
Sbjct: 96  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 155

Query: 128 ENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSS 178
           E+GGR EGNPFGARAVR+YLREVRDFQAKARGVSYEKKRKRPKQK+ +S+
Sbjct: 156 EHGGRPEGNPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPKQKVASSA 197

The following BLAST results are available for this feature:

BLAST of CSPI02G02570 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSH1_ARATH	1.1e-66	76.79	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana GN=LSH1 PE=1 ...	[more]
LSH2_ARATH	7.2e-66	72.88	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana GN=LSH2 PE=1 ...	[more]
G1L3_ORYSI	1.6e-65	77.78	Protein G1-like3 OS=Oryza sativa subsp. indica GN=OsI_05696 PE=3 SV=1	[more]
G1L3_ORYSJ	1.6e-65	77.78	Protein G1-like3 OS=Oryza sativa subsp. japonica GN=G1L3 PE=1 SV=1	[more]
G1L5_ORYSJ	1.4e-64	77.22	Protein G1-like5 OS=Oryza sativa subsp. japonica GN=G1L5 PE=1 SV=1	[more]

BLAST of CSPI02G02570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG60_CUCSA	2.8e-101	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009550 PE=4 SV=1	[more]
A0A061F1I7_THECC	6.3e-77	85.88	Uncharacterized protein isoform 4 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1	[more]
A0A061F0P9_THECC	6.3e-77	85.88	Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1	[more]
A0A061F8S7_THECC	6.3e-77	85.88	Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1	[more]
A0A061F1X4_THECC	6.3e-77	85.88	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1	[more]

BLAST of CSPI02G02570 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G28490.1	6.3e-68	76.79	Protein of unknown function (DUF640)	[more]
AT3G04510.1	4.1e-67	72.88	Protein of unknown function (DUF640)	[more]
AT2G31160.1	9.4e-64	71.35	Protein of unknown function (DUF640)	[more]
AT3G23290.2	4.6e-63	76.22	Protein of unknown function (DUF640)	[more]
AT1G07090.1	5.7e-61	79.26	Protein of unknown function (DUF640)	[more]

BLAST of CSPI02G02570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778666389\|ref\|XP_011648733.1\|	4.1e-101	100.00	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis sativus]	[more]
gi\|659070745\|ref\|XP_008456451.1\|	5.0e-99	97.88	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo]	[more]
gi\|590642085\|ref\|XP_007030416.1\|	9.1e-77	85.88	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]
gi\|590642089\|ref\|XP_007030417.1\|	9.1e-77	85.88	Uncharacterized protein isoform 2 [Theobroma cacao]	[more]
gi\|590642098\|ref\|XP_007030419.1\|	9.1e-77	85.88	Uncharacterized protein isoform 4 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G02570.1	CSPI02G02570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 32..152 score: 4.4
IPR006936	ALOG domain	PROFILE	PS51697	ALOG	coord: 39..166 score: 83
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 8..188 score: 7.0E
None	No IPR available	PANTHER	PTHR31165:SF13	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED	coord: 8..188 score: 7.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G02570	Cla013619	Watermelon (97103) v1	cpiwmB149
CSPI02G02570	Csa2G009550	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G02570	MELO3C004422	Melon (DHL92) v3.5.1	cpimeB139
CSPI02G02570	ClCG02G017040	Watermelon (Charleston Gray)	cpiwcgB128
CSPI02G02570	Lsi11G004080	Bottle gourd (USVL1VR-Ls)	cpilsiB096
CSPI02G02570	MELO3C004422.2	Melon (DHL92) v3.6.1	cpimedB132
CSPI02G02570	CsaV3_2G003730	Cucumber (Chinese Long) v3	cpicucB080
CSPI02G02570	Cla97C02G042750	Watermelon (97103) v2	cpiwmbB120
CSPI02G02570	Bhi06G001547	Wax gourd	cpiwgoB135
CSPI02G02570	Cucsa.132890	Cucumber (Gy14) v1	cgycpiB187
CSPI02G02570	CmaCh05G012310	Cucurbita maxima (Rimu)	cmacpiB800
CSPI02G02570	CmaCh12G011490	Cucurbita maxima (Rimu)	cmacpiB174
CSPI02G02570	Cp4.1LG07g10840	Cucurbita pepo (Zucchini)	cpecpiB813
CSPI02G02570	Cp4.1LG11g10130	Cucurbita pepo (Zucchini)	cpecpiB100
CSPI02G02570	CsGy2G002670	Cucumber (Gy14) v2	cgybcpiB056
CSPI02G02570	Carg23007	Silver-seed gourd	carcpiB1109
CSPI02G02570	Carg17440	Silver-seed gourd	carcpiB0286

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G02570	Wax gourd	cpiwgoB137
CSPI02G02570	Cucurbita moschata (Rifu)	cmocpiB159
CSPI02G02570	Cucurbita moschata (Rifu)	cmocpiB787
CSPI02G02570	Cucurbita pepo (Zucchini)	cpecpiB821