Cp4.1LG11g10130 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g10130
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Light-dependent short hypocotyls protein
Location	Cp4.1LG11 : 8548320 .. 8548865 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGTTCTCAAAATCATCATCCAATCCCATACCCATACCACCCACCACCACCACCACAACCACCATCACCGCCGCCGCGTGTTCGCCGTCGTCATCCTCTACCACCACACCAAGCCGGTATGAGAATCAAAAACGGCGAGATTGGAACACGTTCTGTCAGTACCTTCGCAACCACCGACCGCCGTTGGCTCTACAAATGTGCAGCGGCGCTCACGTGCTGGAATTTCTCCGGTACTTAGACCATTTTGGGAAGACCAAAGTTCATAACCAGACCTGCCCGTTCTTCGGCCTGCCCAACCCGCCAGCTCCCTGTCCCTGCCCGCTCCGACAGGCTTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGTGCAGCCTTTGAAGAAAACGGCGGCCGGCCGGAAGCCAACCCATTTGGAGCTAGAGCTGTTCGTCTCTATTTAAGGGAAGTTCGTGATTTTCAAACGAAAGCAAGAGGTGTTAGCTATGAGAAGAAGAGAAAAAGGCCAAAGCAAAAGCAAAAGCAAGAGGGTGCAACTTGA

mRNA sequence

ATGGATTTGTTCTCAAAATCATCATCCAATCCCATACCCATACCACCCACCACCACCACCACAACCACCATCACCGCCGCCGCGTGTTCGCCGTCGTCATCCTCTACCACCACACCAAGCCGGTATGAGAATCAAAAACGGCGAGATTGGAACACGTTCTGTCAGTACCTTCGCAACCACCGACCGCCGTTGGCTCTACAAATGTGCAGCGGCGCTCACGTGCTGGAATTTCTCCGGTACTTAGACCATTTTGGGAAGACCAAAGTTCATAACCAGACCTGCCCGTTCTTCGGCCTGCCCAACCCGCCAGCTCCCTGTCCCTGCCCGCTCCGACAGGCTTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGTGCAGCCTTTGAAGAAAACGGCGGCCGGCCGGAAGCCAACCCATTTGGAGCTAGAGCTGTTCGTCTCTATTTAAGGGAAGTTCGTGATTTTCAAACGAAAGCAAGAGGTGTTAGCTATGAGAAGAAGAGAAAAAGGCCAAAGCAAAAGCAAAAGCAAGAGGGTGCAACTTGA

Coding sequence (CDS)

ATGGATTTGTTCTCAAAATCATCATCCAATCCCATACCCATACCACCCACCACCACCACCACAACCACCATCACCGCCGCCGCGTGTTCGCCGTCGTCATCCTCTACCACCACACCAAGCCGGTATGAGAATCAAAAACGGCGAGATTGGAACACGTTCTGTCAGTACCTTCGCAACCACCGACCGCCGTTGGCTCTACAAATGTGCAGCGGCGCTCACGTGCTGGAATTTCTCCGGTACTTAGACCATTTTGGGAAGACCAAAGTTCATAACCAGACCTGCCCGTTCTTCGGCCTGCCCAACCCGCCAGCTCCCTGTCCCTGCCCGCTCCGACAGGCTTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGTGCAGCCTTTGAAGAAAACGGCGGCCGGCCGGAAGCCAACCCATTTGGAGCTAGAGCTGTTCGTCTCTATTTAAGGGAAGTTCGTGATTTTCAAACGAAAGCAAGAGGTGTTAGCTATGAGAAGAAGAGAAAAAGGCCAAAGCAAAAGCAAAAGCAAGAGGGTGCAACTTGA

Protein sequence

MDLFSKSSSNPIPIPPTTTTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQKQKQEGAT

Homology

[Close]

BLAST of Cp4.1LG11g10130 vs. Swiss-Prot
Match: LSH1_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana GN=LSH1 PE=1 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.3e-68
Identity = 125/151 (82.78%), Postives = 136/151 (90.07%), Query Frame = 1


Query: 30  SPSSSSTTTP---SRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDHFGK 89
           +P+SS+  TP   SRYENQKRRDWNTFCQYLRNHRPPL+L  CSGAHVLEFLRYLD FGK
Sbjct: 11  NPNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGK 70

Query: 90  TKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGRPEANPFGARAVR 149
           TKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PEANPFG+RAVR
Sbjct: 71  TKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVR 130

Query: 150 LYLREVRDFQTKARGVSYEKKRKRPKQKQKQ 178
           L+LREVRDFQ KARGVSYEKKRKR  +++ Q
Sbjct: 131 LFLREVRDFQAKARGVSYEKKRKRVNRQKPQ 161

[Close]

BLAST of Cp4.1LG11g10130 vs. Swiss-Prot
Match: LSH2_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana GN=LSH2 PE=1 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.9e-66
Identity = 126/175 (72.00%), Postives = 143/175 (81.71%), Query Frame = 1


Query: 1   MDLFSKSSSNPIPIPPTTTTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQYLRNH 60
           MDL S++ +N     P T+ +T   ++  SP SSS     RYENQKRRDWNTFCQYLRNH
Sbjct: 1   MDLISQNHNNR---NPNTSLSTQTPSSFSSPPSSS-----RYENQKRRDWNTFCQYLRNH 60

Query: 61  RPPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 120
            PPL+L  CSGAHVL+FLRYLD FGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDAL
Sbjct: 61  HPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDAL 120

Query: 121 IGRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQKQ 176
           IGRLRAA+EENGG PE +PFG+R+VR++LREVRDFQ K+RGVSYEKKRKR   KQ
Sbjct: 121 IGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQ 167

[Close]

BLAST of Cp4.1LG11g10130 vs. Swiss-Prot
Match: LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.2e-65
Identity = 128/172 (74.42%), Postives = 137/172 (79.65%), Query Frame = 1


Query: 1   MDLFSKSSSNPIPIPPTTTTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQYLRNH 60
           M   + S +  + I    TTTTT ++++ S   S T   SRYENQKRRDWNTF QYLRNH
Sbjct: 8   MGTTNMSHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNH 67

Query: 61  RPPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 120
           RPPL+L  CSGAHVLEFLRYLD FGKTKVH   CPFFG PNPPAPC CPLRQAWGSLDAL
Sbjct: 68  RPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDAL 127

Query: 121 IGRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYE-KKRKRP 172
           IGRLRAAFEENGG PE NPFGARAVRLYLREVRD Q KARG+SYE KKRKRP
Sbjct: 128 IGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of Cp4.1LG11g10130 vs. Swiss-Prot
Match: LSH3_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.4e-65
Identity = 121/143 (84.62%), Postives = 126/143 (88.11%), Query Frame = 1


Query: 30  SPSSSSTTTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDHFGKTKV 89
           S SSS +   SRYENQKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLD FGKTKV
Sbjct: 43  SSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKV 102

Query: 90  HNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGRPEANPFGARAVRLYL 149
           H   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG+PE NPFGARAVRLYL
Sbjct: 103 HTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYL 162

Query: 150 REVRDFQTKARGVSYE-KKRKRP 172
           REVRD Q+KARGVSYE KKRKRP
Sbjct: 163 REVRDMQSKARGVSYEKKKRKRP 185

[Close]

BLAST of Cp4.1LG11g10130 vs. Swiss-Prot
Match: G1L4_ORYSI (Protein G1-like4 OS=Oryza sativa subsp. indica GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 6.4e-64
Identity = 119/151 (78.81%), Postives = 131/151 (86.75%), Query Frame = 1


Query: 30  SPSSSSTTTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDHFGKTKV 89
           S  + +  +PSRYE QKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLD FGKTKV
Sbjct: 30  SMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRYLDQFGKTKV 89

Query: 90  HNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGRPEANPFGARAVRLYL 149
           H   CPFFG P+PPAPCPCPLRQAWGSLDAL+GRLRAAFEENGGRPE+NPF ARAVRLYL
Sbjct: 90  HTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAARAVRLYL 149

Query: 150 REVRDFQTKARGVSYE-KKRKRPKQKQKQEG 180
           REVR+ Q +ARGVSYE KKRK+P+Q+Q Q G
Sbjct: 150 REVREHQARARGVSYEKKKRKKPQQQQLQGG 180

[Close]

BLAST of Cp4.1LG11g10130 vs. TrEMBL
Match: A0A0A0LG60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009550 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 2.9e-79
Identity = 153/181 (84.53%), Postives = 159/181 (87.85%), Query Frame = 1


Query: 1   MDLFSKSSSNPIPIPPTTTTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQYLRNH 60
           MDLFS+SSSN     PTTTTTTT    A + +++S TTPSRYENQKRRDWNTFCQYLRNH
Sbjct: 1   MDLFSESSSNNST--PTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNH 60

Query: 61  RPPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 120
           RPPLALQMCSGAHVLEFLRYLD FGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL
Sbjct: 61  RPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 120

Query: 121 IGRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQKQKQEGA 180
           IGRLRAA+EENGGR E NPFGARAVRLYLREVRDFQ KARGVSYEKKRKRPKQK      
Sbjct: 121 IGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSST 179

Query: 181 T 182
           T
Sbjct: 181 T 179

[Close]

BLAST of Cp4.1LG11g10130 vs. TrEMBL
Match: A0A059B5M3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04235 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 9.6e-75
Identity = 144/168 (85.71%), Postives = 149/168 (88.69%), Query Frame = 1


Query: 7   SSSNPIPIPPTTTTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQYLRNHRPPLAL 66
           SSSNP    P T  T  I A++ S  S+S  TPSRYENQKRRDWNTFCQYLRNHRPPL+L
Sbjct: 10  SSSNPNYDTPITINTHIIGASSSSQMSASPPTPSRYENQKRRDWNTFCQYLRNHRPPLSL 69

Query: 67  QMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 126
            MCSGAHVLEFLRYLD FGKTKVHNQ CPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA
Sbjct: 70  TMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 129

Query: 127 AFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQK 175
           AFEE+GGRPEANPFGARAVRLYLREVRDFQ KARGVSYEKKRKRPKQK
Sbjct: 130 AFEEHGGRPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 177

[Close]

BLAST of Cp4.1LG11g10130 vs. TrEMBL
Match: V7BGL2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G122300g PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.1e-73
Identity = 141/177 (79.66%), Postives = 152/177 (85.88%), Query Frame = 1


Query: 1   MDLFSKSSSNPIPIPPTTTTTTTITAAACSPSSSS---TTTPSRYENQKRRDWNTFCQYL 60
           MDL S+S+S    +   T+  TT T+A  SPSS S   +TTPSRYENQKRRDWNTFCQYL
Sbjct: 1   MDLVSESASPRYKMETPTSNPTTGTSAVSSPSSGSNSGSTTPSRYENQKRRDWNTFCQYL 60

Query: 61  RNHRPPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSL 120
           RNHRPPL+L +CSGAHVLEFL YLD FGKTKVHN  CPFFGLPNPPAPCPCPLRQAWGSL
Sbjct: 61  RNHRPPLSLALCSGAHVLEFLHYLDQFGKTKVHNHPCPFFGLPNPPAPCPCPLRQAWGSL 120

Query: 121 DALIGRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQK 175
           DALIGRLRAA+EENGGRPE NPFGARAVR+YLR+VRDFQ KARGVSYEKKRKRPK K
Sbjct: 121 DALIGRLRAAYEENGGRPETNPFGARAVRIYLRDVRDFQAKARGVSYEKKRKRPKSK 177

[Close]

BLAST of Cp4.1LG11g10130 vs. TrEMBL
Match: V4TW07_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022288mg PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 5.3e-73
Identity = 141/178 (79.21%), Postives = 153/178 (85.96%), Query Frame = 1


Query: 1   MDLFSKSSSNPIPIPPTTTTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQYLRNH 60
           MDL S    N    P ++ T  T   A  S SS S TTPSRYE+QKRRDWNTFCQYLRNH
Sbjct: 1   MDLVSPPP-NTSGFPSSSPTVPTTPTARASSSSPSATTPSRYESQKRRDWNTFCQYLRNH 60

Query: 61  RPPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 120
           RPPL+L MCSGAHVLEFLRYLD FGKTKVHNQ CPFFGLPNPPAPCPCPLRQAWGSLDAL
Sbjct: 61  RPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDAL 120

Query: 121 IGRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQKQKQE 179
           IGRLRAA+EE+GGRPEANPFGARAVR++LREVRDFQ KARGVSY+KKRKRPKQ+Q+Q+
Sbjct: 121 IGRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKARGVSYDKKRKRPKQQQQQQ 177

[Close]

BLAST of Cp4.1LG11g10130 vs. TrEMBL
Match: A0A067DZV2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028699mg PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 5.3e-73
Identity = 141/178 (79.21%), Postives = 153/178 (85.96%), Query Frame = 1


Query: 1   MDLFSKSSSNPIPIPPTTTTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQYLRNH 60
           MDL S    N    P ++ T  T   A  S SS S TTPSRYE+QKRRDWNTFCQYLRNH
Sbjct: 1   MDLVSPPP-NTSGFPSSSPTVPTTPTARASSSSPSATTPSRYESQKRRDWNTFCQYLRNH 60

Query: 61  RPPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 120
           RPPL+L MCSGAHVLEFLRYLD FGKTKVHNQ CPFFGLPNPPAPCPCPLRQAWGSLDAL
Sbjct: 61  RPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDAL 120

Query: 121 IGRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQKQKQE 179
           IGRLRAA+EE+GGRPEANPFGARAVR++LREVRDFQ KARGVSY+KKRKRPKQ+Q+Q+
Sbjct: 121 IGRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKARGVSYDKKRKRPKQQQQQQ 177

[Close]

BLAST of Cp4.1LG11g10130 vs. TAIR10
Match: AT5G28490.1 (AT5G28490.1 Protein of unknown function (DUF640))

HSP 1 Score: 258.8 bits (660), Expect = 2.4e-69
Identity = 125/151 (82.78%), Postives = 136/151 (90.07%), Query Frame = 1


Query: 30  SPSSSSTTTP---SRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDHFGK 89
           +P+SS+  TP   SRYENQKRRDWNTFCQYLRNHRPPL+L  CSGAHVLEFLRYLD FGK
Sbjct: 11  NPNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGK 70

Query: 90  TKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGRPEANPFGARAVR 149
           TKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PEANPFG+RAVR
Sbjct: 71  TKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVR 130

Query: 150 LYLREVRDFQTKARGVSYEKKRKRPKQKQKQ 178
           L+LREVRDFQ KARGVSYEKKRKR  +++ Q
Sbjct: 131 LFLREVRDFQAKARGVSYEKKRKRVNRQKPQ 161

[Close]

BLAST of Cp4.1LG11g10130 vs. TAIR10
Match: AT3G04510.1 (AT3G04510.1 Protein of unknown function (DUF640))

HSP 1 Score: 251.5 bits (641), Expect = 3.9e-67
Identity = 126/175 (72.00%), Postives = 143/175 (81.71%), Query Frame = 1


Query: 1   MDLFSKSSSNPIPIPPTTTTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQYLRNH 60
           MDL S++ +N     P T+ +T   ++  SP SSS     RYENQKRRDWNTFCQYLRNH
Sbjct: 1   MDLISQNHNNR---NPNTSLSTQTPSSFSSPPSSS-----RYENQKRRDWNTFCQYLRNH 60

Query: 61  RPPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 120
            PPL+L  CSGAHVL+FLRYLD FGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDAL
Sbjct: 61  HPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDAL 120

Query: 121 IGRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQKQ 176
           IGRLRAA+EENGG PE +PFG+R+VR++LREVRDFQ K+RGVSYEKKRKR   KQ
Sbjct: 121 IGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQ 167

[Close]

BLAST of Cp4.1LG11g10130 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 250.8 bits (639), Expect = 6.6e-67
Identity = 128/172 (74.42%), Postives = 137/172 (79.65%), Query Frame = 1


Query: 1   MDLFSKSSSNPIPIPPTTTTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQYLRNH 60
           M   + S +  + I    TTTTT ++++ S   S T   SRYENQKRRDWNTF QYLRNH
Sbjct: 8   MGTTNMSHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNH 67

Query: 61  RPPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 120
           RPPL+L  CSGAHVLEFLRYLD FGKTKVH   CPFFG PNPPAPC CPLRQAWGSLDAL
Sbjct: 68  RPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDAL 127

Query: 121 IGRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYE-KKRKRP 172
           IGRLRAAFEENGG PE NPFGARAVRLYLREVRD Q KARG+SYE KKRKRP
Sbjct: 128 IGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of Cp4.1LG11g10130 vs. TAIR10
Match: AT2G31160.1 (AT2G31160.1 Protein of unknown function (DUF640))

HSP 1 Score: 249.2 bits (635), Expect = 1.9e-66
Identity = 121/143 (84.62%), Postives = 126/143 (88.11%), Query Frame = 1


Query: 30  SPSSSSTTTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDHFGKTKV 89
           S SSS +   SRYENQKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLD FGKTKV
Sbjct: 43  SSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKV 102

Query: 90  HNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGRPEANPFGARAVRLYL 149
           H   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG+PE NPFGARAVRLYL
Sbjct: 103 HTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYL 162

Query: 150 REVRDFQTKARGVSYE-KKRKRP 172
           REVRD Q+KARGVSYE KKRKRP
Sbjct: 163 REVRDMQSKARGVSYEKKKRKRP 185

[Close]

BLAST of Cp4.1LG11g10130 vs. TAIR10
Match: AT1G07090.1 (AT1G07090.1 Protein of unknown function (DUF640))

HSP 1 Score: 229.9 bits (585), Expect = 1.2e-60
Identity = 107/140 (76.43%), Postives = 121/140 (86.43%), Query Frame = 1


Query: 33  SSSTTTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDHFGKTKVHNQ 92
           SS   TPSRYE+QKRRDWNTF QYL+NH+PPLAL  CSGAHV+EFL+YLD FGKTKVH  
Sbjct: 23  SSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVA 82

Query: 93  TCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGRPEANPFGARAVRLYLREV 152
            CP+FG   PP+PC CPL+QAWGSLDALIGRLRAA+EENGGRP++NPF ARAVR+YLREV
Sbjct: 83  ACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREV 142

Query: 153 RDFQTKARGVSYE-KKRKRP 172
           R+ Q KARG+ YE KKRKRP
Sbjct: 143 RESQAKARGIPYEKKKRKRP 162

[Close]

BLAST of Cp4.1LG11g10130 vs. NCBI nr
Match: gi|778666389|ref|XP_011648733.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis sativus])

HSP 1 Score: 302.8 bits (774), Expect = 4.2e-79
Identity = 153/181 (84.53%), Postives = 159/181 (87.85%), Query Frame = 1


Query: 1   MDLFSKSSSNPIPIPPTTTTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQYLRNH 60
           MDLFS+SSSN     PTTTTTTT    A + +++S TTPSRYENQKRRDWNTFCQYLRNH
Sbjct: 1   MDLFSESSSNNST--PTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNH 60

Query: 61  RPPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 120
           RPPLALQMCSGAHVLEFLRYLD FGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL
Sbjct: 61  RPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 120

Query: 121 IGRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQKQKQEGA 180
           IGRLRAA+EENGGR E NPFGARAVRLYLREVRDFQ KARGVSYEKKRKRPKQK      
Sbjct: 121 IGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSST 179

Query: 181 T 182
           T
Sbjct: 181 T 179

[Close]

BLAST of Cp4.1LG11g10130 vs. NCBI nr
Match: gi|659070745|ref|XP_008456451.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo])

HSP 1 Score: 302.0 bits (772), Expect = 7.1e-79
Identity = 153/181 (84.53%), Postives = 159/181 (87.85%), Query Frame = 1


Query: 1   MDLFSKSSSNPIPIPPTTTTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQYLRNH 60
           MDLFS+SSSN     PTTTTTTT    A + +++S TTPSRYENQKRRDWNTFCQYLRNH
Sbjct: 1   MDLFSESSSNNDN--PTTTTTTTTPPTATTSAAASATTPSRYENQKRRDWNTFCQYLRNH 60

Query: 61  RPPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 120
           RPPLALQMCSGAHVLEFLRYLD FGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL
Sbjct: 61  RPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 120

Query: 121 IGRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQKQKQEGA 180
           IGRLRAA+EENGGR E NPFGARAVRLYLREVRDFQ KARGVSYEKKRKRPKQK      
Sbjct: 121 IGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSST 179

Query: 181 T 182
           T
Sbjct: 181 T 179

[Close]

BLAST of Cp4.1LG11g10130 vs. NCBI nr
Match: gi|1009117864|ref|XP_015875547.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Ziziphus jujuba])

HSP 1 Score: 290.0 bits (741), Expect = 2.8e-75
Identity = 144/173 (83.24%), Postives = 154/173 (89.02%), Query Frame = 1


Query: 2   DLFSKSSSNPIPIPPTTTTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQYLRNHR 61
           ++ + S+S  I  PP++TTTTT        SSS+ TTPSRYENQKRRDWNTFCQYLRNHR
Sbjct: 28  NITASSTSTTISSPPSSTTTTT-------SSSSTPTTPSRYENQKRRDWNTFCQYLRNHR 87

Query: 62  PPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI 121
           PPL+L MCSGAHVLEFLRYLD FGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI
Sbjct: 88  PPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI 147

Query: 122 GRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQK 175
           GRLRAA+EE+GGRPEANPFGARAVRLYLREVRDFQ KARGVSYEKKRKRPK K
Sbjct: 148 GRLRAAYEEHGGRPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKPK 193

[Close]

BLAST of Cp4.1LG11g10130 vs. NCBI nr
Match: gi|702447701|ref|XP_010024955.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Eucalyptus grandis])

HSP 1 Score: 287.7 bits (735), Expect = 1.4e-74
Identity = 144/168 (85.71%), Postives = 149/168 (88.69%), Query Frame = 1


Query: 7   SSSNPIPIPPTTTTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQYLRNHRPPLAL 66
           SSSNP    P T  T  I A++ S  S+S  TPSRYENQKRRDWNTFCQYLRNHRPPL+L
Sbjct: 10  SSSNPNYDTPITINTHIIGASSSSQMSASPPTPSRYENQKRRDWNTFCQYLRNHRPPLSL 69

Query: 67  QMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 126
            MCSGAHVLEFLRYLD FGKTKVHNQ CPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA
Sbjct: 70  TMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 129

Query: 127 AFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQK 175
           AFEE+GGRPEANPFGARAVRLYLREVRDFQ KARGVSYEKKRKRPKQK
Sbjct: 130 AFEEHGGRPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 177

[Close]

BLAST of Cp4.1LG11g10130 vs. NCBI nr
Match: gi|743888675|ref|XP_011038515.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Populus euphratica])

HSP 1 Score: 287.0 bits (733), Expect = 2.4e-74
Identity = 145/178 (81.46%), Postives = 154/178 (86.52%), Query Frame = 1


Query: 1   MDLFSKSS----SNPIPIPPTTTTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQY 60
           MDL S S+    S+P+   PTTTTTT  T  A + S SST  PSRYENQKRRDWNTFCQY
Sbjct: 1   MDLASLSTNPTYSSPVITSPTTTTTTNTTTLATTTSPSST--PSRYENQKRRDWNTFCQY 60

Query: 61  LRNHRPPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGS 120
           LRNHRPPL+L +CSGAHVLEFLRYLD FGKTKVHNQTCPFFG PNPPAPCPCPLRQAWGS
Sbjct: 61  LRNHRPPLSLPICSGAHVLEFLRYLDQFGKTKVHNQTCPFFGFPNPPAPCPCPLRQAWGS 120

Query: 121 LDALIGRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQK 175
           LDALIGRLRAA+EE+GGRPE NPFGARAVR+YLREVRDFQ KARGVSYEKKRKRPK K
Sbjct: 121 LDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPKPK 176

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g10130 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSH1_ARATH	4.3e-68	82.78	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana GN=LSH1 PE=1 ...	[more]
LSH2_ARATH	6.9e-66	72.00	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana GN=LSH2 PE=1 ...	[more]
LSH4_ARATH	1.2e-65	74.42	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 ...	[more]
LSH3_ARATH	3.4e-65	84.62	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 ...	[more]
G1L4_ORYSI	6.4e-64	78.81	Protein G1-like4 OS=Oryza sativa subsp. indica GN=OsI_16643 PE=3 SV=1	[more]

BLAST of Cp4.1LG11g10130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG60_CUCSA	2.9e-79	84.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009550 PE=4 SV=1	[more]
A0A059B5M3_EUCGR	9.6e-75	85.71	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04235 PE=4 SV=1	[more]
V7BGL2_PHAVU	3.1e-73	79.66	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G122300g PE=4 SV=1	[more]
V4TW07_9ROSI	5.3e-73	79.21	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022288mg PE=4 SV=1	[more]
A0A067DZV2_CITSI	5.3e-73	79.21	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028699mg PE=4 SV=1	[more]

BLAST of Cp4.1LG11g10130 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G28490.1	2.4e-69	82.78	Protein of unknown function (DUF640)	[more]
AT3G04510.1	3.9e-67	72.00	Protein of unknown function (DUF640)	[more]
AT3G23290.2	6.6e-67	74.42	Protein of unknown function (DUF640)	[more]
AT2G31160.1	1.9e-66	84.62	Protein of unknown function (DUF640)	[more]
AT1G07090.1	1.2e-60	76.43	Protein of unknown function (DUF640)	[more]

BLAST of Cp4.1LG11g10130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778666389\|ref\|XP_011648733.1\|	4.2e-79	84.53	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis sativus]	[more]
gi\|659070745\|ref\|XP_008456451.1\|	7.1e-79	84.53	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo]	[more]
gi\|1009117864\|ref\|XP_015875547.1\|	2.8e-75	83.24	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Ziziphus jujuba]	[more]
gi\|702447701\|ref\|XP_010024955.1\|	1.4e-74	85.71	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Eucalyptus grandis]	[more]
gi\|743888675\|ref\|XP_011038515.1\|	2.4e-74	81.46	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g10130.1	Cp4.1LG11g10130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 33..154 score: 6.8
IPR006936	ALOG domain	PROFILE	PS51697	ALOG	coord: 41..168 score: 81
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 29..178 score: 3.2E
None	No IPR available	PANTHER	PTHR31165:SF13	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED	coord: 29..178 score: 3.2E
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..29 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g10130	Cucsa.132890	Cucumber (Gy14) v1	cgycpeB0351
Cp4.1LG11g10130	CmaCh12G011490	Cucurbita maxima (Rimu)	cmacpeB171
Cp4.1LG11g10130	CmaCh05G012310	Cucurbita maxima (Rimu)	cmacpeB767
Cp4.1LG11g10130	Cla013619	Watermelon (97103) v1	cpewmB113
Cp4.1LG11g10130	Csa2G009550	Cucumber (Chinese Long) v2	cpecuB103
Cp4.1LG11g10130	MELO3C004422	Melon (DHL92) v3.5.1	cpemeB099
Cp4.1LG11g10130	ClCG02G017040	Watermelon (Charleston Gray)	cpewcgB104
Cp4.1LG11g10130	CSPI02G02570	Wild cucumber (PI 183967)	cpecpiB100
Cp4.1LG11g10130	Lsi11G004080	Bottle gourd (USVL1VR-Ls)	cpelsiB074
Cp4.1LG11g10130	MELO3C004422.2	Melon (DHL92) v3.6.1	cpemedB123
Cp4.1LG11g10130	CsaV3_2G003730	Cucumber (Chinese Long) v3	cpecucB0114
Cp4.1LG11g10130	Bhi06G001547	Wax gourd	cpewgoB0130
Cp4.1LG11g10130	CsGy2G002670	Cucumber (Gy14) v2	cgybcpeB168
Cp4.1LG11g10130	Carg23007	Silver-seed gourd	carcpeB1494
Cp4.1LG11g10130	Carg17440	Silver-seed gourd	carcpeB0357

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG11g10130	Cp4.1LG07g10840	Cucurbita pepo (Zucchini)	cpecpeB147

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g10130	Wax gourd	cpewgoB0114
Cp4.1LG11g10130	Cucurbita pepo (Zucchini)	cpecpeB139
Cp4.1LG11g10130	Cucurbita moschata (Rifu)	cmocpeB147
Cp4.1LG11g10130	Cucurbita moschata (Rifu)	cmocpeB721