ClCG02G017040 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G017040
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Protein of unknown function (DUF640) LENGTH=190
Location	CG_Chr02 : 31542179 .. 31542721 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGTTTTCAGAATCATCATCCAATAATCCCACTACTTACACCGCCGCCGCCACCACCACCACACCACCCGCCGCCACCCCGAGCCGGTACGAGAATCAAAAACGGAGAGATTGGAATACGTTTTGCCAATACCTCCGTAACCACCGGCCGCCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGTTACTTAGATCAGTTCGGGAAGACAAAAGTACACAACCAAACCTGCCCGTTCTTCGGGCTGCCCAACCCACCTGCCCCCTGCCCGTGCCCCTTGAGACAAGCGTGGGGCAGCCTAGACGCTCTCATCGGCCGGCTCCGGGCAGCCTATGAAGAGAACGGCGGACGGGCAGAGGGAAACCCATTTGGAGCAAGAGCTGTTCGTTTGTATTTAAGGGAAGTTCGTGACTTTCAAGCCAAAGCAAGAGGTGTTAGTTATGAGAAGAAGAGGAAAAGGCCAAAGCAAAAACTTACTAATTCTTCAACTCATGATCATCATCAAGATCCTACAACTTCATGA

mRNA sequence

ATGGATTTGTTTTCAGAATCATCATCCAATAATCCCACTACTTACACCGCCGCCGCCACCACCACCACACCACCCGCCGCCACCCCGAGCCGGTACGAGAATCAAAAACGGAGAGATTGGAATACGTTTTGCCAATACCTCCGTAACCACCGGCCGCCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGTTACTTAGATCAGTTCGGGAAGACAAAAGTACACAACCAAACCTGCCCGTTCTTCGGGCTGCCCAACCCACCTGCCCCCTGCCCGTGCCCCTTGAGACAAGCGTGGGGCAGCCTAGACGCTCTCATCGGCCGGCTCCGGGCAGCCTATGAAGAGAACGGCGGACGGGCAGAGGGAAACCCATTTGGAGCAAGAGCTGTTCGTTTGTATTTAAGGGAAGTTCGTGACTTTCAAGCCAAAGCAAGAGGTGTTAGTTATGAGAAGAAGAGGAAAAGGCCAAAGCAAAAACTTACTAATTCTTCAACTCATGATCATCATCAAGATCCTACAACTTCATGA

Coding sequence (CDS)

ATGGATTTGTTTTCAGAATCATCATCCAATAATCCCACTACTTACACCGCCGCCGCCACCACCACCACACCACCCGCCGCCACCCCGAGCCGGTACGAGAATCAAAAACGGAGAGATTGGAATACGTTTTGCCAATACCTCCGTAACCACCGGCCGCCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGTTACTTAGATCAGTTCGGGAAGACAAAAGTACACAACCAAACCTGCCCGTTCTTCGGGCTGCCCAACCCACCTGCCCCCTGCCCGTGCCCCTTGAGACAAGCGTGGGGCAGCCTAGACGCTCTCATCGGCCGGCTCCGGGCAGCCTATGAAGAGAACGGCGGACGGGCAGAGGGAAACCCATTTGGAGCAAGAGCTGTTCGTTTGTATTTAAGGGAAGTTCGTGACTTTCAAGCCAAAGCAAGAGGTGTTAGTTATGAGAAGAAGAGGAAAAGGCCAAAGCAAAAACTTACTAATTCTTCAACTCATGATCATCATCAAGATCCTACAACTTCATGA

Protein sequence

MDLFSESSSNNPTTYTAAATTTTPPAATPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSSTHDHHQDPTTS

Homology

[Close]

BLAST of ClCG02G017040 vs. Swiss-Prot
Match: LSH1_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana GN=LSH1 PE=1 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 6.4e-72
Identity = 130/160 (81.25%), Postives = 137/160 (85.62%), Query Frame = 1


Query: 1   MDLFSESSSNNPTTYTAAATTTTPPAATPSRYENQKRRDWNTFCQYLRNHRPPLALQMCS 60
           MDL S   + NP +    +T  TPP++  SRYENQKRRDWNTFCQYLRNHRPPL+L  CS
Sbjct: 1   MDLISHQPNKNPNS----STQLTPPSS--SRYENQKRRDWNTFCQYLRNHRPPLSLPSCS 60

Query: 61  GAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE 120
           GAHVLEFLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE
Sbjct: 61  GAHVLEFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE 120

Query: 121 NGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKR 161
           NGG  E NPFG+RAVRL+LREVRDFQAKARGVSYEKKRKR
Sbjct: 121 NGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKR 154

[Close]

BLAST of ClCG02G017040 vs. Swiss-Prot
Match: LSH2_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana GN=LSH2 PE=1 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.3e-69
Identity = 127/173 (73.41%), Postives = 142/173 (82.08%), Query Frame = 1


Query: 1   MDLFSESSSN-NPTTYTAAATTTT---PPAATPSRYENQKRRDWNTFCQYLRNHRPPLAL 60
           MDL S++ +N NP T  +  T ++   PP++  SRYENQKRRDWNTFCQYLRNH PPL+L
Sbjct: 1   MDLISQNHNNRNPNTSLSTQTPSSFSSPPSS--SRYENQKRRDWNTFCQYLRNHHPPLSL 60

Query: 61  QMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 120
             CSGAHVL+FLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRA
Sbjct: 61  ASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 120

Query: 121 AYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS 170
           AYEENGG  E +PFG+R+VR++LREVRDFQAK+RGVSYEKKRKR   K    S
Sbjct: 121 AYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQS 171

[Close]

BLAST of ClCG02G017040 vs. Swiss-Prot
Match: G1L5_ORYSJ (Protein G1-like5 OS=Oryza sativa subsp. japonica GN=G1L5 PE=1 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.1e-67
Identity = 124/170 (72.94%), Postives = 134/170 (78.82%), Query Frame = 1


Query: 19  ATTTTPPAATPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTK 78
           AT+ +   A+PSRYE+QKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLDQFGKTK
Sbjct: 28  ATSASAAGASPSRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTK 87

Query: 79  VHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLY 138
           VH   CPFFG P PPAPCPCPLRQAWGSLDAL+GRLRAAYEENGGR E NPFGARAVRLY
Sbjct: 88  VHAPACPFFGHPAPPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLY 147

Query: 139 LREVRDFQAKARGVSYE-KKRKRPKQKLTNSSTHD----------HHQDP 178
           LREVR+ QA+ARGVSYE KKRK+P    + ++ HD          HH  P
Sbjct: 148 LREVREHQARARGVSYEKKKRKKPPHPSSAAAAHDDAANGALHHHHHMPP 197

[Close]

BLAST of ClCG02G017040 vs. Swiss-Prot
Match: LSH3_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 6.2e-67
Identity = 125/171 (73.10%), Postives = 137/171 (80.12%), Query Frame = 1


Query: 9   SNNPTTYTAAA--------TTTTPPAATPSRYENQKRRDWNTFCQYLRNHRPPLALQMCS 68
           SNN ++ T A         ++++ P+A  SRYENQKRRDWNTF QYLRNHRPPL+L  CS
Sbjct: 24  SNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCS 83

Query: 69  GAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE 128
           GAHVLEFLRYLDQFGKTKVH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EE
Sbjct: 84  GAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE 143

Query: 129 NGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRPKQKLTNSST 171
           NGG+ E NPFGARAVRLYLREVRD Q+KARGVSYE KKRKRP    + SS+
Sbjct: 144 NGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSS 194

[Close]

BLAST of ClCG02G017040 vs. Swiss-Prot
Match: LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.8e-66
Identity = 127/170 (74.71%), Postives = 131/170 (77.06%), Query Frame = 1


Query: 8   SSNNPTTYTAAATTTTPPAATPS-----------RYENQKRRDWNTFCQYLRNHRPPLAL 67
           S N      AAATTTT  +++ S           RYENQKRRDWNTF QYLRNHRPPL+L
Sbjct: 14  SHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSL 73

Query: 68  QMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 127
             CSGAHVLEFLRYLDQFGKTKVH   CPFFG PNPPAPC CPLRQAWGSLDALIGRLRA
Sbjct: 74  SRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRA 133

Query: 128 AYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRPKQKL 166
           A+EENGG  E NPFGARAVRLYLREVRD QAKARG+SYE KKRKRP   L
Sbjct: 134 AFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPPPL 183

[Close]

BLAST of ClCG02G017040 vs. TrEMBL
Match: A0A0A0LG60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009550 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 5.6e-91
Identity = 168/190 (88.42%), Postives = 169/190 (88.95%), Query Frame = 1


Query: 1   MDLFSESSSNNPTTYTAAATTTTPPAAT---------PSRYENQKRRDWNTFCQYLRNHR 60
           MDLFSESSSNN T  T   TTTTPP AT         PSRYENQKRRDWNTFCQYLRNHR
Sbjct: 1   MDLFSESSSNNSTP-TTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHR 60

Query: 61  PPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI 120
           PPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI
Sbjct: 61  PPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI 120

Query: 121 GRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS-- 180
           GRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK+  SS  
Sbjct: 121 GRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTT 180

[Close]

BLAST of ClCG02G017040 vs. TrEMBL
Match: A0A061F8S7_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 3.4e-80
Identity = 143/162 (88.27%), Postives = 153/162 (94.44%), Query Frame = 1


Query: 9   SNNPTTYTAAATTTTPPAAT-PSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEF 68
           S++  T T+  TTTTPPA+T PSRYENQKRRDWNTFCQYLRNHRPPL+L MCSGAHVLEF
Sbjct: 36  SSSTVTPTSGTTTTTPPASTTPSRYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEF 95

Query: 69  LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEG 128
           LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE+GGR EG
Sbjct: 96  LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEG 155

Query: 129 NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS 170
           NPFGARAVR+YLREVRDFQAKARGVSYEKKRKRPKQK+ +S+
Sbjct: 156 NPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPKQKVASSA 197

[Close]

BLAST of ClCG02G017040 vs. TrEMBL
Match: A0A061F1X4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 3.4e-80
Identity = 143/162 (88.27%), Postives = 153/162 (94.44%), Query Frame = 1


Query: 9   SNNPTTYTAAATTTTPPAAT-PSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEF 68
           S++  T T+  TTTTPPA+T PSRYENQKRRDWNTFCQYLRNHRPPL+L MCSGAHVLEF
Sbjct: 36  SSSTVTPTSGTTTTTPPASTTPSRYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEF 95

Query: 69  LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEG 128
           LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE+GGR EG
Sbjct: 96  LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEG 155

Query: 129 NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS 170
           NPFGARAVR+YLREVRDFQAKARGVSYEKKRKRPKQK+ +S+
Sbjct: 156 NPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPKQKVASSA 197

[Close]

BLAST of ClCG02G017040 vs. TrEMBL
Match: A0A061F0P9_THECC (Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 3.4e-80
Identity = 143/162 (88.27%), Postives = 153/162 (94.44%), Query Frame = 1


Query: 9   SNNPTTYTAAATTTTPPAAT-PSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEF 68
           S++  T T+  TTTTPPA+T PSRYENQKRRDWNTFCQYLRNHRPPL+L MCSGAHVLEF
Sbjct: 36  SSSTVTPTSGTTTTTPPASTTPSRYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEF 95

Query: 69  LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEG 128
           LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE+GGR EG
Sbjct: 96  LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEG 155

Query: 129 NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS 170
           NPFGARAVR+YLREVRDFQAKARGVSYEKKRKRPKQK+ +S+
Sbjct: 156 NPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPKQKVASSA 197

[Close]

BLAST of ClCG02G017040 vs. TrEMBL
Match: A0A061F1I7_THECC (Uncharacterized protein isoform 4 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 3.4e-80
Identity = 143/162 (88.27%), Postives = 153/162 (94.44%), Query Frame = 1


Query: 9   SNNPTTYTAAATTTTPPAAT-PSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEF 68
           S++  T T+  TTTTPPA+T PSRYENQKRRDWNTFCQYLRNHRPPL+L MCSGAHVLEF
Sbjct: 36  SSSTVTPTSGTTTTTPPASTTPSRYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEF 95

Query: 69  LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEG 128
           LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE+GGR EG
Sbjct: 96  LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEG 155

Query: 129 NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS 170
           NPFGARAVR+YLREVRDFQAKARGVSYEKKRKRPKQK+ +S+
Sbjct: 156 NPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPKQKVASSA 197

[Close]

BLAST of ClCG02G017040 vs. TAIR10
Match: AT5G28490.1 (AT5G28490.1 Protein of unknown function (DUF640))

HSP 1 Score: 271.6 bits (693), Expect = 3.6e-73
Identity = 130/160 (81.25%), Postives = 137/160 (85.62%), Query Frame = 1


Query: 1   MDLFSESSSNNPTTYTAAATTTTPPAATPSRYENQKRRDWNTFCQYLRNHRPPLALQMCS 60
           MDL S   + NP +    +T  TPP++  SRYENQKRRDWNTFCQYLRNHRPPL+L  CS
Sbjct: 1   MDLISHQPNKNPNS----STQLTPPSS--SRYENQKRRDWNTFCQYLRNHRPPLSLPSCS 60

Query: 61  GAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE 120
           GAHVLEFLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE
Sbjct: 61  GAHVLEFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE 120

Query: 121 NGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKR 161
           NGG  E NPFG+RAVRL+LREVRDFQAKARGVSYEKKRKR
Sbjct: 121 NGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKR 154

[Close]

BLAST of ClCG02G017040 vs. TAIR10
Match: AT3G04510.1 (AT3G04510.1 Protein of unknown function (DUF640))

HSP 1 Score: 263.1 bits (671), Expect = 1.3e-70
Identity = 127/173 (73.41%), Postives = 142/173 (82.08%), Query Frame = 1


Query: 1   MDLFSESSSN-NPTTYTAAATTTT---PPAATPSRYENQKRRDWNTFCQYLRNHRPPLAL 60
           MDL S++ +N NP T  +  T ++   PP++  SRYENQKRRDWNTFCQYLRNH PPL+L
Sbjct: 1   MDLISQNHNNRNPNTSLSTQTPSSFSSPPSS--SRYENQKRRDWNTFCQYLRNHHPPLSL 60

Query: 61  QMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 120
             CSGAHVL+FLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRA
Sbjct: 61  ASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 120

Query: 121 AYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS 170
           AYEENGG  E +PFG+R+VR++LREVRDFQAK+RGVSYEKKRKR   K    S
Sbjct: 121 AYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQS 171

[Close]

BLAST of ClCG02G017040 vs. TAIR10
Match: AT2G31160.1 (AT2G31160.1 Protein of unknown function (DUF640))

HSP 1 Score: 255.0 bits (650), Expect = 3.5e-68
Identity = 125/171 (73.10%), Postives = 137/171 (80.12%), Query Frame = 1


Query: 9   SNNPTTYTAAA--------TTTTPPAATPSRYENQKRRDWNTFCQYLRNHRPPLALQMCS 68
           SNN ++ T A         ++++ P+A  SRYENQKRRDWNTF QYLRNHRPPL+L  CS
Sbjct: 24  SNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCS 83

Query: 69  GAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE 128
           GAHVLEFLRYLDQFGKTKVH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EE
Sbjct: 84  GAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE 143

Query: 129 NGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRPKQKLTNSST 171
           NGG+ E NPFGARAVRLYLREVRD Q+KARGVSYE KKRKRP    + SS+
Sbjct: 144 NGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSS 194

[Close]

BLAST of ClCG02G017040 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 251.5 bits (641), Expect = 3.8e-67
Identity = 127/170 (74.71%), Postives = 131/170 (77.06%), Query Frame = 1


Query: 8   SSNNPTTYTAAATTTTPPAATPS-----------RYENQKRRDWNTFCQYLRNHRPPLAL 67
           S N      AAATTTT  +++ S           RYENQKRRDWNTF QYLRNHRPPL+L
Sbjct: 14  SHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSL 73

Query: 68  QMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 127
             CSGAHVLEFLRYLDQFGKTKVH   CPFFG PNPPAPC CPLRQAWGSLDALIGRLRA
Sbjct: 74  SRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRA 133

Query: 128 AYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRPKQKL 166
           A+EENGG  E NPFGARAVRLYLREVRD QAKARG+SYE KKRKRP   L
Sbjct: 134 AFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPPPL 183

[Close]

BLAST of ClCG02G017040 vs. TAIR10
Match: AT1G07090.1 (AT1G07090.1 Protein of unknown function (DUF640))

HSP 1 Score: 236.9 bits (603), Expect = 9.8e-63
Identity = 109/138 (78.99%), Postives = 119/138 (86.23%), Query Frame = 1


Query: 25  PAATPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTC 84
           P ATPSRYE+QKRRDWNTF QYL+NH+PPLAL  CSGAHV+EFL+YLDQFGKTKVH   C
Sbjct: 25  PPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAAC 84

Query: 85  PFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRD 144
           P+FG   PP+PC CPL+QAWGSLDALIGRLRAAYEENGGR + NPF ARAVR+YLREVR+
Sbjct: 85  PYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRE 144

Query: 145 FQAKARGVSYE-KKRKRP 162
            QAKARG+ YE KKRKRP
Sbjct: 145 SQAKARGIPYEKKKRKRP 162

[Close]

BLAST of ClCG02G017040 vs. NCBI nr
Match: gi|778666389|ref|XP_011648733.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis sativus])

HSP 1 Score: 341.7 bits (875), Expect = 8.0e-91
Identity = 168/190 (88.42%), Postives = 169/190 (88.95%), Query Frame = 1


Query: 1   MDLFSESSSNNPTTYTAAATTTTPPAAT---------PSRYENQKRRDWNTFCQYLRNHR 60
           MDLFSESSSNN T  T   TTTTPP AT         PSRYENQKRRDWNTFCQYLRNHR
Sbjct: 1   MDLFSESSSNNSTP-TTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHR 60

Query: 61  PPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI 120
           PPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI
Sbjct: 61  PPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI 120

Query: 121 GRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS-- 180
           GRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK+  SS  
Sbjct: 121 GRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTT 180

[Close]

BLAST of ClCG02G017040 vs. NCBI nr
Match: gi|659070745|ref|XP_008456451.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo])

HSP 1 Score: 340.5 bits (872), Expect = 1.8e-90
Identity = 170/192 (88.54%), Postives = 171/192 (89.06%), Query Frame = 1


Query: 1   MDLFSESSSNN--PTTYTAAATTTTPPAAT---------PSRYENQKRRDWNTFCQYLRN 60
           MDLFSESSSNN  PTT T   TTTTPP AT         PSRYENQKRRDWNTFCQYLRN
Sbjct: 1   MDLFSESSSNNDNPTTTT---TTTTPPTATTSAAASATTPSRYENQKRRDWNTFCQYLRN 60

Query: 61  HRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDA 120
           HRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDA
Sbjct: 61  HRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDA 120

Query: 121 LIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS 180
           LIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK+  SS
Sbjct: 121 LIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSS 180

[Close]

BLAST of ClCG02G017040 vs. NCBI nr
Match: gi|590642093|ref|XP_007030418.1| (Uncharacterized protein isoform 3 [Theobroma cacao])

HSP 1 Score: 305.8 bits (782), Expect = 4.9e-80
Identity = 143/162 (88.27%), Postives = 153/162 (94.44%), Query Frame = 1


Query: 9   SNNPTTYTAAATTTTPPAAT-PSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEF 68
           S++  T T+  TTTTPPA+T PSRYENQKRRDWNTFCQYLRNHRPPL+L MCSGAHVLEF
Sbjct: 36  SSSTVTPTSGTTTTTPPASTTPSRYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEF 95

Query: 69  LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEG 128
           LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE+GGR EG
Sbjct: 96  LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEG 155

Query: 129 NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS 170
           NPFGARAVR+YLREVRDFQAKARGVSYEKKRKRPKQK+ +S+
Sbjct: 156 NPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPKQKVASSA 197

[Close]

BLAST of ClCG02G017040 vs. NCBI nr
Match: gi|590642089|ref|XP_007030417.1| (Uncharacterized protein isoform 2 [Theobroma cacao])

HSP 1 Score: 305.8 bits (782), Expect = 4.9e-80
Identity = 143/162 (88.27%), Postives = 153/162 (94.44%), Query Frame = 1


Query: 9   SNNPTTYTAAATTTTPPAAT-PSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEF 68
           S++  T T+  TTTTPPA+T PSRYENQKRRDWNTFCQYLRNHRPPL+L MCSGAHVLEF
Sbjct: 36  SSSTVTPTSGTTTTTPPASTTPSRYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEF 95

Query: 69  LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEG 128
           LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE+GGR EG
Sbjct: 96  LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEG 155

Query: 129 NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS 170
           NPFGARAVR+YLREVRDFQAKARGVSYEKKRKRPKQK+ +S+
Sbjct: 156 NPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPKQKVASSA 197

[Close]

BLAST of ClCG02G017040 vs. NCBI nr
Match: gi|590642085|ref|XP_007030416.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 305.8 bits (782), Expect = 4.9e-80
Identity = 143/162 (88.27%), Postives = 153/162 (94.44%), Query Frame = 1


Query: 9   SNNPTTYTAAATTTTPPAAT-PSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEF 68
           S++  T T+  TTTTPPA+T PSRYENQKRRDWNTFCQYLRNHRPPL+L MCSGAHVLEF
Sbjct: 36  SSSTVTPTSGTTTTTPPASTTPSRYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEF 95

Query: 69  LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEG 128
           LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE+GGR EG
Sbjct: 96  LRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEG 155

Query: 129 NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS 170
           NPFGARAVR+YLREVRDFQAKARGVSYEKKRKRPKQK+ +S+
Sbjct: 156 NPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPKQKVASSA 197

The following BLAST results are available for this feature:

BLAST of ClCG02G017040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSH1_ARATH	6.4e-72	81.25	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana GN=LSH1 PE=1 ...	[more]
LSH2_ARATH	2.3e-69	73.41	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana GN=LSH2 PE=1 ...	[more]
G1L5_ORYSJ	2.1e-67	72.94	Protein G1-like5 OS=Oryza sativa subsp. japonica GN=G1L5 PE=1 SV=1	[more]
LSH3_ARATH	6.2e-67	73.10	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 ...	[more]
LSH4_ARATH	6.8e-66	74.71	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 ...	[more]

BLAST of ClCG02G017040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG60_CUCSA	5.6e-91	88.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009550 PE=4 SV=1	[more]
A0A061F8S7_THECC	3.4e-80	88.27	Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1	[more]
A0A061F1X4_THECC	3.4e-80	88.27	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1	[more]
A0A061F0P9_THECC	3.4e-80	88.27	Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1	[more]
A0A061F1I7_THECC	3.4e-80	88.27	Uncharacterized protein isoform 4 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1	[more]

BLAST of ClCG02G017040 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G28490.1	3.6e-73	81.25	Protein of unknown function (DUF640)	[more]
AT3G04510.1	1.3e-70	73.41	Protein of unknown function (DUF640)	[more]
AT2G31160.1	3.5e-68	73.10	Protein of unknown function (DUF640)	[more]
AT3G23290.2	3.8e-67	74.71	Protein of unknown function (DUF640)	[more]
AT1G07090.1	9.8e-63	78.99	Protein of unknown function (DUF640)	[more]

BLAST of ClCG02G017040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778666389\|ref\|XP_011648733.1\|	8.0e-91	88.42	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis sativus]	[more]
gi\|659070745\|ref\|XP_008456451.1\|	1.8e-90	88.54	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo]	[more]
gi\|590642093\|ref\|XP_007030418.1\|	4.9e-80	88.27	Uncharacterized protein isoform 3 [Theobroma cacao]	[more]
gi\|590642089\|ref\|XP_007030417.1\|	4.9e-80	88.27	Uncharacterized protein isoform 2 [Theobroma cacao]	[more]
gi\|590642085\|ref\|XP_007030416.1\|	4.9e-80	88.27	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0050434	positive regulation of viral transcription
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0042025	host cell nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0001070	RNA binding transcription factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G017040.1	ClCG02G017040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 26..144 score: 6.8
IPR006936	ALOG domain	PROFILE	PS51697	ALOG	coord: 31..158 score: 83
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 5..167 score: 8.6E
None	No IPR available	PANTHER	PTHR31165:SF16	SUBFAMILY NOT NAMED	coord: 5..167 score: 8.6E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G017040	Csa2G009550	Cucumber (Chinese Long) v2	cuwcgB122
ClCG02G017040	MELO3C004422	Melon (DHL92) v3.5.1	mewcgB375
ClCG02G017040	Cla013619	Watermelon (97103) v1	wcgwmB197
ClCG02G017040	Cla97C02G042750	Watermelon (97103) v2	wcgwmbB138
ClCG02G017040	Bhi06G001547	Wax gourd	wcgwgoB263
ClCG02G017040	CSPI02G02570	Wild cucumber (PI 183967)	cpiwcgB128
ClCG02G017040	Cucsa.132890	Cucumber (Gy14) v1	cgywcgB218
ClCG02G017040	CmaCh05G012310	Cucurbita maxima (Rimu)	cmawcgB695
ClCG02G017040	CmaCh12G011490	Cucurbita maxima (Rimu)	cmawcgB156
ClCG02G017040	Lsi11G004080	Bottle gourd (USVL1VR-Ls)	lsiwcgB098
ClCG02G017040	Cp4.1LG11g10130	Cucurbita pepo (Zucchini)	cpewcgB104
ClCG02G017040	Cp4.1LG07g10840	Cucurbita pepo (Zucchini)	cpewcgB736
ClCG02G017040	CsGy2G002670	Cucumber (Gy14) v2	cgybwcgB119
ClCG02G017040	MELO3C004422.2	Melon (DHL92) v3.6.1	medwcgB369
ClCG02G017040	Carg23007	Silver-seed gourd	carwcgB1042
ClCG02G017040	Carg17440	Silver-seed gourd	carwcgB0245
ClCG02G017040	CsaV3_2G003730	Cucumber (Chinese Long) v3	cucwcgB137

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G017040	Wax gourd	wcgwgoB260
ClCG02G017040	Cucurbita moschata (Rifu)	cmowcgB144
ClCG02G017040	Cucurbita moschata (Rifu)	cmowcgB700
ClCG02G017040	Cucurbita pepo (Zucchini)	cpewcgB733