CsGy2G002670.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTTGTTTTCAGAATCATCATCCAATAATAGTACTCCCACCACCACCACTACCACTACAACACCACCCACCGCCACCACCACCACTGCTGCCTCTGCCACCACACCAAGCCGGTACGAGAATCAAAAAAGGAGAGATTGGAACACGTTTTGTCAATACCTCCGGAACCACCGGCCACCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGGTACTTAGATCAGTTCGGTAAGACAAAAGTACACAACCAAACCTGTCCGTTCTTTGGCCTGCCCAACCCCCCTGCCCCCTGTCCGTGCCCGTTGAGACAAGCGTGGGGCAGCTTAGACGCTCTCATCGGCCGGCTTCGGGCAGCTTACGAAGAGAACGGTGGTCGGGCGGAGGGAAATCCTTTCGGAGCAAGAGCGGTTCGGTTGTACTTAAGGGAAGTTCGTGATTTTCAAGCGAAAGCAAGAGGTGTTAGTTATGAGAAGAAGAGAAAAAGGCCTAAGCAAAAAATTAATACTTCTTCAACTACTACTCACGATCATCATCAAGATTCTACTACTTGA ATGGATTTGTTTTCAGAATCATCATCCAATAATAGTACTCCCACCACCACCACTACCACTACAACACCACCCACCGCCACCACCACCACTGCTGCCTCTGCCACCACACCAAGCCGGTACGAGAATCAAAAAAGGAGAGATTGGAACACGTTTTGTCAATACCTCCGGAACCACCGGCCACCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGGTACTTAGATCAGTTCGGTAAGACAAAAGTACACAACCAAACCTGTCCGTTCTTTGGCCTGCCCAACCCCCCTGCCCCCTGTCCGTGCCCGTTGAGACAAGCGTGGGGCAGCTTAGACGCTCTCATCGGCCGGCTTCGGGCAGCTTACGAAGAGAACGGTGGTCGGGCGGAGGGAAATCCTTTCGGAGCAAGAGCGGTTCGGTTGTACTTAAGGGAAGTTCGTGATTTTCAAGCGAAAGCAAGAGGTGTTAGTTATGAGAAGAAGAGAAAAAGGCCTAAGCAAAAAATTAATACTTCTTCAACTACTACTCACGATCATCATCAAGATTCTACTACTTGA ATGGATTTGTTTTCAGAATCATCATCCAATAATAGTACTCCCACCACCACCACTACCACTACAACACCACCCACCGCCACCACCACCACTGCTGCCTCTGCCACCACACCAAGCCGGTACGAGAATCAAAAAAGGAGAGATTGGAACACGTTTTGTCAATACCTCCGGAACCACCGGCCACCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGGTACTTAGATCAGTTCGGTAAGACAAAAGTACACAACCAAACCTGTCCGTTCTTTGGCCTGCCCAACCCCCCTGCCCCCTGTCCGTGCCCGTTGAGACAAGCGTGGGGCAGCTTAGACGCTCTCATCGGCCGGCTTCGGGCAGCTTACGAAGAGAACGGTGGTCGGGCGGAGGGAAATCCTTTCGGAGCAAGAGCGGTTCGGTTGTACTTAAGGGAAGTTCGTGATTTTCAAGCGAAAGCAAGAGGTGTTAGTTATGAGAAGAAGAGAAAAAGGCCTAAGCAAAAAATTAATACTTCTTCAACTACTACTCACGATCATCATCAAGATTCTACTACTTGA MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTTHDHHQDSTT
BLAST of CsGy2G002670.1 vs. NCBI nr
Match: XP_011648733.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis sativus] >KGN60768.1 hypothetical protein Csa_2G009550 [Cucumis sativus]) HSP 1 Score: 298.1 bits (762), Expect = 2.1e-77 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
BLAST of CsGy2G002670.1 vs. NCBI nr
Match: XP_008456451.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo]) HSP 1 Score: 298.1 bits (762), Expect = 2.1e-77 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
BLAST of CsGy2G002670.1 vs. NCBI nr
Match: EOY10918.1 (Uncharacterized protein TCM_026191 isoform 1 [Theobroma cacao]) HSP 1 Score: 265.4 bits (677), Expect = 1.5e-67 Identity = 130/138 (94.20%), Postives = 135/138 (97.83%), Query Frame = 0
BLAST of CsGy2G002670.1 vs. NCBI nr
Match: EOY10919.1 (Uncharacterized protein TCM_026191 isoform 2 [Theobroma cacao]) HSP 1 Score: 265.4 bits (677), Expect = 1.5e-67 Identity = 130/138 (94.20%), Postives = 135/138 (97.83%), Query Frame = 0
BLAST of CsGy2G002670.1 vs. NCBI nr
Match: EOY10920.1 (Uncharacterized protein TCM_026191 isoform 3 [Theobroma cacao]) HSP 1 Score: 265.4 bits (677), Expect = 1.5e-67 Identity = 130/138 (94.20%), Postives = 135/138 (97.83%), Query Frame = 0
BLAST of CsGy2G002670.1 vs. TAIR10
Match: AT5G28490.1 (Protein of unknown function (DUF640)) HSP 1 Score: 234.2 bits (596), Expect = 6.7e-62 Identity = 115/126 (91.27%), Postives = 119/126 (94.44%), Query Frame = 0
BLAST of CsGy2G002670.1 vs. TAIR10
Match: AT3G04510.1 (Protein of unknown function (DUF640)) HSP 1 Score: 232.6 bits (592), Expect = 1.9e-61 Identity = 114/134 (85.07%), Postives = 123/134 (91.79%), Query Frame = 0
BLAST of CsGy2G002670.1 vs. TAIR10
Match: AT3G23290.2 (Protein of unknown function (DUF640)) HSP 1 Score: 223.4 bits (568), Expect = 1.2e-58 Identity = 106/125 (84.80%), Postives = 109/125 (87.20%), Query Frame = 0
BLAST of CsGy2G002670.1 vs. TAIR10
Match: AT1G07090.1 (Protein of unknown function (DUF640)) HSP 1 Score: 212.6 bits (540), Expect = 2.1e-55 Identity = 100/132 (75.76%), Postives = 112/132 (84.85%), Query Frame = 0
BLAST of CsGy2G002670.1 vs. TAIR10
Match: AT2G31160.1 (Protein of unknown function (DUF640)) HSP 1 Score: 209.1 bits (531), Expect = 2.3e-54 Identity = 105/125 (84.00%), Postives = 110/125 (88.00%), Query Frame = 0
BLAST of CsGy2G002670.1 vs. Swiss-Prot
Match: sp|Q6NNI3|LSH1_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LSH1 PE=1 SV=1) HSP 1 Score: 234.2 bits (596), Expect = 1.2e-60 Identity = 115/126 (91.27%), Postives = 119/126 (94.44%), Query Frame = 0
BLAST of CsGy2G002670.1 vs. Swiss-Prot
Match: sp|Q9M836|LSH2_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LSH2 PE=1 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 3.5e-60 Identity = 114/134 (85.07%), Postives = 123/134 (91.79%), Query Frame = 0
BLAST of CsGy2G002670.1 vs. Swiss-Prot
Match: sp|Q9LW68|LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1) HSP 1 Score: 223.4 bits (568), Expect = 2.1e-57 Identity = 106/125 (84.80%), Postives = 109/125 (87.20%), Query Frame = 0
BLAST of CsGy2G002670.1 vs. Swiss-Prot
Match: sp|Q7XDD0|G1L5_ORYSJ (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1) HSP 1 Score: 214.5 bits (545), Expect = 9.9e-55 Identity = 107/125 (85.60%), Postives = 112/125 (89.60%), Query Frame = 0
BLAST of CsGy2G002670.1 vs. Swiss-Prot
Match: sp|Q9LMK2|LSH6_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1) HSP 1 Score: 212.6 bits (540), Expect = 3.8e-54 Identity = 100/132 (75.76%), Postives = 112/132 (84.85%), Query Frame = 0
BLAST of CsGy2G002670.1 vs. TrEMBL
Match: tr|A0A1S3C396|A0A1S3C396_CUCME (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo OX=3656 GN=LOC103496393 PE=4 SV=1) HSP 1 Score: 298.1 bits (762), Expect = 1.4e-77 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
BLAST of CsGy2G002670.1 vs. TrEMBL
Match: tr|A0A0A0LG60|A0A0A0LG60_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009550 PE=4 SV=1) HSP 1 Score: 298.1 bits (762), Expect = 1.4e-77 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
BLAST of CsGy2G002670.1 vs. TrEMBL
Match: tr|A0A061F0P9|A0A061F0P9_THECC (Uncharacterized protein isoform 3 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 SV=1) HSP 1 Score: 265.4 bits (677), Expect = 9.9e-68 Identity = 130/138 (94.20%), Postives = 135/138 (97.83%), Query Frame = 0
BLAST of CsGy2G002670.1 vs. TrEMBL
Match: tr|A0A061F1I7|A0A061F1I7_THECC (Uncharacterized protein isoform 4 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 SV=1) HSP 1 Score: 265.4 bits (677), Expect = 9.9e-68 Identity = 130/138 (94.20%), Postives = 135/138 (97.83%), Query Frame = 0
BLAST of CsGy2G002670.1 vs. TrEMBL
Match: tr|A0A061F8S7|A0A061F8S7_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 SV=1) HSP 1 Score: 265.4 bits (677), Expect = 9.9e-68 Identity = 130/138 (94.20%), Postives = 135/138 (97.83%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
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