Cp4.1LG12g05450 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG12g05450
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Rapid alkalinization factor
Location	Cp4.1LG12 : 8061529 .. 8061885 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGCCAAGCTTTCTGTTCTCCTTCCATTTTGCTTCATCGCTGCATTCCTGATCGTCTTCTCCACTGCAGTATTGGCCACCACCACAAAAGGCCCGAGTTGGGTCCTCGATCGAGCTCTAGCTACCTGTCATGGCTCCATGGCAGACTGCATGATGGATGACATTGAATTTCAGATGGACTCCGAAATCAATAGACGCATATTGGCCGATGTAAACTACATAAGCTACGATGCGCTCAGGGCCAACAAGGTGCCATGCTCACGCAGAGGAGCATCTTACTACAATTGCCAGCCAGGTGCTGAGGCTAACCCCTACGACCGTGGCTGCAGTGCTATTGCTCGTTGCCGAAGCTAA

mRNA sequence

ATGGTGGCCAAGCTTTCTGTTCTCCTTCCATTTTGCTTCATCGCTGCATTCCTGATCGTCTTCTCCACTGCAGTATTGGCCACCACCACAAAAGGCCCGAGTTGGGTCCTCGATCGAGCTCTAGCTACCTGTCATGGCTCCATGGCAGACTGCATGATGGATGACATTGAATTTCAGATGGACTCCGAAATCAATAGACGCATATTGGCCGATGTAAACTACATAAGCTACGATGCGCTCAGGGCCAACAAGGTGCCATGCTCACGCAGAGGAGCATCTTACTACAATTGCCAGCCAGGTGCTGAGGCTAACCCCTACGACCGTGGCTGCAGTGCTATTGCTCGTTGCCGAAGCTAA

Coding sequence (CDS)

ATGGTGGCCAAGCTTTCTGTTCTCCTTCCATTTTGCTTCATCGCTGCATTCCTGATCGTCTTCTCCACTGCAGTATTGGCCACCACCACAAAAGGCCCGAGTTGGGTCCTCGATCGAGCTCTAGCTACCTGTCATGGCTCCATGGCAGACTGCATGATGGATGACATTGAATTTCAGATGGACTCCGAAATCAATAGACGCATATTGGCCGATGTAAACTACATAAGCTACGATGCGCTCAGGGCCAACAAGGTGCCATGCTCACGCAGAGGAGCATCTTACTACAATTGCCAGCCAGGTGCTGAGGCTAACCCCTACGACCGTGGCTGCAGTGCTATTGCTCGTTGCCGAAGCTAA

Protein sequence

MVAKLSVLLPFCFIAAFLIVFSTAVLATTTKGPSWVLDRALATCHGSMADCMMDDIEFQMDSEINRRILADVNYISYDALRANKVPCSRRGASYYNCQPGAEANPYDRGCSAIARCRS

Homology

[Close]

BLAST of Cp4.1LG12g05450 vs. Swiss-Prot
Match: RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.0e-25
Identity = 62/114 (54.39%), Postives = 77/114 (67.54%), Query Frame = 1


Query: 6   SVLLPFCFIAAFLIVFSTAVLATTTKGPSWVLD-RALATCHGSMADCMMDDIEFQMDSEI 65
           S L+    I AF I  + A     +    WV+  R+   C GS+ +C+ ++ EF++DSE 
Sbjct: 5   SGLILCVLIGAFFISMAAA---GDSGAYDWVMPARSGGGCKGSIGECIAEEEEFELDSES 64

Query: 66  NRRILADVNYISYDALRANKVPCSRRGASYYNCQPGAEANPYDRGCSAIARCRS 119
           NRRILA   YISY AL+ N VPCSRRGASYYNC+PGA+ANPY RGCSAI RCRS
Sbjct: 65  NRRILATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRCRS 115

[Close]

BLAST of Cp4.1LG12g05450 vs. Swiss-Prot
Match: RLF1_ARATH (Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.5e-25
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 1


Query: 44  CHGSMADCMMDDIEFQMDSEINRRILADVNYISYDALRANKVPCSRRGASYYNCQPGAEA 103
           CHGS+A+C+  + E +MDSEINRRILA   YISY +L+ N VPCSRRGASYYNCQ GA+A
Sbjct: 47  CHGSIAECIGAEEE-EMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQA 106

Query: 104 NPYDRGCSAIARCRS 119
           NPY RGCS IARCRS
Sbjct: 107 NPYSRGCSKIARCRS 120

[Close]

BLAST of Cp4.1LG12g05450 vs. Swiss-Prot
Match: RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.5e-24
Identity = 61/111 (54.95%), Postives = 76/111 (68.47%), Query Frame = 1


Query: 10  PFCFIAAFLIV-FSTAVLATTTKGPSWVLDRALATCHGSMADCMMD--DIEFQMDSEINR 69
           P   I A L V F  A + + + G    ++   + C+G++A+C +   + EF+MDSEINR
Sbjct: 8   PVAIIIAILTVHFLFAAVTSQSSGDFVPIE---SKCNGTIAECSLSTAEEEFEMDSEINR 67

Query: 70  RILADVNYISYDALRANKVPCSRRGASYYNCQPGAEANPYDRGCSAIARCR 118
           RILA   YISY ALR N VPCSRRGASYYNC+ GA+ANPY RGCSAI RCR
Sbjct: 68  RILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115

[Close]

BLAST of Cp4.1LG12g05450 vs. Swiss-Prot
Match: RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.2e-24
Identity = 58/109 (53.21%), Postives = 73/109 (66.97%), Query Frame = 1


Query: 14  IAAFLIVFSTAVLATTTKGPSWVLDRA-----LATCHGSMADCMMDDIEFQMDSEINRRI 73
           + A L +  +AV +T   G S    RA      + C GS+A+C+ ++ E + DS+I+RRI
Sbjct: 10  VIAILAIVISAVESTGDFGDSLDFVRAGSSSLFSGCTGSIAECIAEEEEMEFDSDISRRI 69

Query: 74  LADVNYISYDALRANKVPCSRRGASYYNCQPGAEANPYDRGCSAIARCR 118
           LA   YISY A+R N VPCSRRGASYYNCQ GA+ANPY RGCS I RCR
Sbjct: 70  LAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCR 118

[Close]

BLAST of Cp4.1LG12g05450 vs. Swiss-Prot
Match: RLF23_ARATH (Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.2e-22
Identity = 52/90 (57.78%), Postives = 60/90 (66.67%), Query Frame = 1


Query: 44  CHGSMADCMMDDI----------------EFQMDSEINRRILADVNYISYDALRANKVPC 103
           C G++A+C +                   EF+MDSEINRRILA   YISY ALR N +PC
Sbjct: 47  CRGTIAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPC 106

Query: 104 SRRGASYYNCQPGAEANPYDRGCSAIARCR 118
           SRRGASYYNC+ GA+ANPY RGCSAI RCR
Sbjct: 107 SRRGASYYNCRRGAQANPYSRGCSAITRCR 136

[Close]

BLAST of Cp4.1LG12g05450 vs. TrEMBL
Match: A0A0A0K607_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G396340 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.3e-40
Identity = 87/118 (73.73%), Postives = 96/118 (81.36%), Query Frame = 1


Query: 1   MVAKLSVLLPFCFIAAFLIVFSTAVLATTTKGPSWVLDRALATCHGSMADCMMDDIEFQM 60
           M   +S LLP   + A L V STA      K PSWVLD A A CHGSMA+CMM+DIEFQM
Sbjct: 1   MATTVSFLLPIFLLVAILTVSSTA------KTPSWVLDGAHARCHGSMAECMMEDIEFQM 60

Query: 61  DSEINRRILADVNYISYDALRANKVPCSRRGASYYNCQPGAEANPYDRGCSAIARCRS 119
           DSEINRRILAD+NYISYDAL+AN VPCSR+GASYYNCQPGAEANPYDRGC+AI+RCRS
Sbjct: 61  DSEINRRILADLNYISYDALKANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS 112

[Close]

BLAST of Cp4.1LG12g05450 vs. TrEMBL
Match: M5VTQ6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020353mg PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.9e-27
Identity = 68/103 (66.02%), Postives = 78/103 (75.73%), Query Frame = 1


Query: 16  AFLIVFSTAVLATTTKGPSWVLDRALATCHGSMADCMMDDIEFQMDSEINRRILADVNYI 75
           A LI+ +  V A +  G SWV  R    C GS+A+CM DD EF MDS+INRRILA   YI
Sbjct: 4   ATLIISTWTVHAGSDHGLSWVPGRT--RCQGSIAECMADD-EFDMDSQINRRILATSQYI 63

Query: 76  SYDALRANKVPCSRRGASYYNCQPGAEANPYDRGCSAIARCRS 119
           SY AL+ N VPCSRRGASYYNC+PGAE+NPY+RGCSAIARCRS
Sbjct: 64  SYGALQRNTVPCSRRGASYYNCKPGAESNPYNRGCSAIARCRS 103

[Close]

BLAST of Cp4.1LG12g05450 vs. TrEMBL
Match: B9T0V9_RICCO (RALFL33, putative OS=Ricinus communis GN=RCOM_1439830 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.9e-27
Identity = 67/111 (60.36%), Postives = 80/111 (72.07%), Query Frame = 1


Query: 8   LLPFCFIAAFLIVFSTAVLATTTKGPSWVLDRALATCHGSMADCMMDDIEFQMDSEINRR 67
           L  F  + + LI+ ++ V AT     +WV     + C G++ADCM +D EF MDSEINRR
Sbjct: 9   LFTFYLLLSSLIISTSTVEATIDHKLNWV--PKTSRCQGTLADCMQED-EFDMDSEINRR 68

Query: 68  ILADVNYISYDALRANKVPCSRRGASYYNCQPGAEANPYDRGCSAIARCRS 119
           ILA  NYISY AL+ N +PCS+RGASYYNCQPGAEANPY RGCSAI RCRS
Sbjct: 69  ILATTNYISYGALQRNTIPCSQRGASYYNCQPGAEANPYSRGCSAITRCRS 116

[Close]

BLAST of Cp4.1LG12g05450 vs. TrEMBL
Match: A2Q327_MEDTR (RALF OS=Medicago truncatula GN=MTR_7g113080 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.9e-26
Identity = 59/88 (67.05%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 32  GPSWVLDRALATCHGSMADCMMD--DIEFQMDSEINRRILADVNYISYDALRANKVPCSR 91
           G  W+     ATC GS+ADCM+   + EFQ D+EINRRILA   YISY AL+ N VPCSR
Sbjct: 39  GMEWIHQTKTATCEGSIADCMLQQGEEEFQFDNEINRRILATTKYISYGALQRNTVPCSR 98

Query: 92  RGASYYNCQPGAEANPYDRGCSAIARCR 118
           RGASYYNC+PGA+ANPY RGCSAI RCR
Sbjct: 99  RGASYYNCRPGAQANPYSRGCSAITRCR 126

[Close]

BLAST of Cp4.1LG12g05450 vs. TrEMBL
Match: B9I9T7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s12630g PE=4 SV=2)

HSP 1 Score: 126.7 bits (317), Expect = 1.9e-26
Identity = 66/101 (65.35%), Postives = 77/101 (76.24%), Query Frame = 1


Query: 18  LIVFSTAVLATTTKGPSWVLDRALATCHGSMADCMMDDIEFQMDSEINRRILADVNYISY 77
           LI+ S+ V A+     +WV  RA   C G++A+CM +D EF+MDSEINRRILA  NYISY
Sbjct: 17  LIISSSTVDASEDHNLNWVPTRARG-CQGTVAECMGND-EFEMDSEINRRILATSNYISY 76

Query: 78  DALRANKVPCSRRGASYYNCQPGAEANPYDRGCSAIARCRS 119
           DAL  N VPCS+RGASYYNC+ GAEANPY RGCSAI RCRS
Sbjct: 77  DALGKNNVPCSQRGASYYNCKTGAEANPYSRGCSAITRCRS 115

[Close]

BLAST of Cp4.1LG12g05450 vs. TAIR10
Match: AT1G02900.1 (AT1G02900.1 rapid alkalinization factor 1)

HSP 1 Score: 114.8 bits (286), Expect = 3.7e-26
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 1


Query: 44  CHGSMADCMMDDIEFQMDSEINRRILADVNYISYDALRANKVPCSRRGASYYNCQPGAEA 103
           CHGS+A+C+  + E +MDSEINRRILA   YISY +L+ N VPCSRRGASYYNCQ GA+A
Sbjct: 47  CHGSIAECIGAEEE-EMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQA 106

Query: 104 NPYDRGCSAIARCRS 119
           NPY RGCS IARCRS
Sbjct: 107 NPYSRGCSKIARCRS 120

[Close]

BLAST of Cp4.1LG12g05450 vs. TAIR10
Match: AT4G15800.1 (AT4G15800.1 ralf-like 33)

HSP 1 Score: 111.7 bits (278), Expect = 3.1e-25
Identity = 61/111 (54.95%), Postives = 76/111 (68.47%), Query Frame = 1


Query: 10  PFCFIAAFLIV-FSTAVLATTTKGPSWVLDRALATCHGSMADCMMD--DIEFQMDSEINR 69
           P   I A L V F  A + + + G    ++   + C+G++A+C +   + EF+MDSEINR
Sbjct: 8   PVAIIIAILTVHFLFAAVTSQSSGDFVPIE---SKCNGTIAECSLSTAEEEFEMDSEINR 67

Query: 70  RILADVNYISYDALRANKVPCSRRGASYYNCQPGAEANPYDRGCSAIARCR 118
           RILA   YISY ALR N VPCSRRGASYYNC+ GA+ANPY RGCSAI RCR
Sbjct: 68  RILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115

[Close]

BLAST of Cp4.1LG12g05450 vs. TAIR10
Match: AT3G05490.1 (AT3G05490.1 ralf-like 22)

HSP 1 Score: 111.3 bits (277), Expect = 4.1e-25
Identity = 58/109 (53.21%), Postives = 73/109 (66.97%), Query Frame = 1


Query: 14  IAAFLIVFSTAVLATTTKGPSWVLDRA-----LATCHGSMADCMMDDIEFQMDSEINRRI 73
           + A L +  +AV +T   G S    RA      + C GS+A+C+ ++ E + DS+I+RRI
Sbjct: 10  VIAILAIVISAVESTGDFGDSLDFVRAGSSSLFSGCTGSIAECIAEEEEMEFDSDISRRI 69

Query: 74  LADVNYISYDALRANKVPCSRRGASYYNCQPGAEANPYDRGCSAIARCR 118
           LA   YISY A+R N VPCSRRGASYYNCQ GA+ANPY RGCS I RCR
Sbjct: 70  LAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCR 118

[Close]

BLAST of Cp4.1LG12g05450 vs. TAIR10
Match: AT3G16570.1 (AT3G16570.1 rapid alkalinization factor 23)

HSP 1 Score: 105.1 bits (261), Expect = 2.9e-23
Identity = 52/90 (57.78%), Postives = 60/90 (66.67%), Query Frame = 1


Query: 44  CHGSMADCMMDDI----------------EFQMDSEINRRILADVNYISYDALRANKVPC 103
           C G++A+C +                   EF+MDSEINRRILA   YISY ALR N +PC
Sbjct: 47  CRGTIAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPC 106

Query: 104 SRRGASYYNCQPGAEANPYDRGCSAIARCR 118
           SRRGASYYNC+ GA+ANPY RGCSAI RCR
Sbjct: 107 SRRGASYYNCRRGAQANPYSRGCSAITRCR 136

[Close]

BLAST of Cp4.1LG12g05450 vs. TAIR10
Match: AT1G28270.1 (AT1G28270.1 ralf-like 4)

HSP 1 Score: 80.9 bits (198), Expect = 5.9e-16
Identity = 45/100 (45.00%), Postives = 56/100 (56.00%), Query Frame = 1


Query: 18  LIVFSTAVLATTTKGPSWVLDRALATCHGSMADCMMDDIEFQMDSEINRRILA-DVNYIS 77
           L++F   +LA   K  +       +  +G       D++E  MDSE NRR LA    YI 
Sbjct: 6   LLIFGLLILAMVAKSVNATYPLTKSCINGQGCIGEDDELESLMDSETNRRQLARGRRYIG 65

Query: 78  YDALRANKVPCSRRGASYYNCQPGAEANPYDRGCSAIARC 117
           YDAL+ N VPCSRRG SYY+C+     NPY RGCSAI  C
Sbjct: 66  YDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHC 105

[Close]

BLAST of Cp4.1LG12g05450 vs. NCBI nr
Match: gi|778730402|ref|XP_011659776.1| (PREDICTED: rapid alkalinization factor [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 3.2e-40
Identity = 87/118 (73.73%), Postives = 96/118 (81.36%), Query Frame = 1


Query: 1   MVAKLSVLLPFCFIAAFLIVFSTAVLATTTKGPSWVLDRALATCHGSMADCMMDDIEFQM 60
           M   +S LLP   + A L V STA      K PSWVLD A A CHGSMA+CMM+DIEFQM
Sbjct: 1   MATTVSFLLPIFLLVAILTVSSTA------KTPSWVLDGAHARCHGSMAECMMEDIEFQM 60

Query: 61  DSEINRRILADVNYISYDALRANKVPCSRRGASYYNCQPGAEANPYDRGCSAIARCRS 119
           DSEINRRILAD+NYISYDAL+AN VPCSR+GASYYNCQPGAEANPYDRGC+AI+RCRS
Sbjct: 61  DSEINRRILADLNYISYDALKANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS 112

[Close]

BLAST of Cp4.1LG12g05450 vs. NCBI nr
Match: gi|659101540|ref|XP_008451660.1| (PREDICTED: rapid alkalinization factor-like [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 4.7e-39
Identity = 86/118 (72.88%), Postives = 95/118 (80.51%), Query Frame = 1


Query: 1   MVAKLSVLLPFCFIAAFLIVFSTAVLATTTKGPSWVLDRALATCHGSMADCMMDDIEFQM 60
           M AK+S LLP   + A L V STA        PSWVL  A A CHGSMA+CM +DIEF+M
Sbjct: 1   MAAKVSFLLPIFLLVAILTVSSTATT------PSWVLGGAHARCHGSMAECMKEDIEFEM 60

Query: 61  DSEINRRILADVNYISYDALRANKVPCSRRGASYYNCQPGAEANPYDRGCSAIARCRS 119
           DSEINRRILAD+NYISYDALRAN VPCSR+GASYYNCQPGAEANPYDRGC+AI+RCRS
Sbjct: 61  DSEINRRILADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS 112

[Close]

BLAST of Cp4.1LG12g05450 vs. NCBI nr
Match: gi|645258777|ref|XP_008235043.1| (PREDICTED: protein RALF-like 33 [Prunus mume])

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-27
Identity = 71/111 (63.96%), Postives = 80/111 (72.07%), Query Frame = 1


Query: 8   LLPFCFIAAFLIVFSTAVLATTTKGPSWVLDRALATCHGSMADCMMDDIEFQMDSEINRR 67
           L  F    A LI+ +  V A    G SWV  R   +C GS+A+CM DD EF MDSEINRR
Sbjct: 9   LFAFYMFTATLIISTWTVHAGGDHGLSWVPGRT--SCQGSIAECMADD-EFDMDSEINRR 68

Query: 68  ILADVNYISYDALRANKVPCSRRGASYYNCQPGAEANPYDRGCSAIARCRS 119
           ILA   YISY AL+ N VPCSRRGASYYNC+PGAE+NPY+RGCSAIARCRS
Sbjct: 69  ILATSQYISYGALQRNTVPCSRRGASYYNCKPGAESNPYNRGCSAIARCRS 116

[Close]

BLAST of Cp4.1LG12g05450 vs. NCBI nr
Match: gi|595790681|ref|XP_007199089.1| (hypothetical protein PRUPE_ppa020353mg [Prunus persica])

HSP 1 Score: 129.4 bits (324), Expect = 4.1e-27
Identity = 68/103 (66.02%), Postives = 78/103 (75.73%), Query Frame = 1


Query: 16  AFLIVFSTAVLATTTKGPSWVLDRALATCHGSMADCMMDDIEFQMDSEINRRILADVNYI 75
           A LI+ +  V A +  G SWV  R    C GS+A+CM DD EF MDS+INRRILA   YI
Sbjct: 4   ATLIISTWTVHAGSDHGLSWVPGRT--RCQGSIAECMADD-EFDMDSQINRRILATSQYI 63

Query: 76  SYDALRANKVPCSRRGASYYNCQPGAEANPYDRGCSAIARCRS 119
           SY AL+ N VPCSRRGASYYNC+PGAE+NPY+RGCSAIARCRS
Sbjct: 64  SYGALQRNTVPCSRRGASYYNCKPGAESNPYNRGCSAIARCRS 103

[Close]

BLAST of Cp4.1LG12g05450 vs. NCBI nr
Match: gi|255582168|ref|XP_002531878.1| (PREDICTED: protein RALF-like 33 [Ricinus communis])

HSP 1 Score: 129.4 bits (324), Expect = 4.1e-27
Identity = 67/111 (60.36%), Postives = 80/111 (72.07%), Query Frame = 1


Query: 8   LLPFCFIAAFLIVFSTAVLATTTKGPSWVLDRALATCHGSMADCMMDDIEFQMDSEINRR 67
           L  F  + + LI+ ++ V AT     +WV     + C G++ADCM +D EF MDSEINRR
Sbjct: 9   LFTFYLLLSSLIISTSTVEATIDHKLNWV--PKTSRCQGTLADCMQED-EFDMDSEINRR 68

Query: 68  ILADVNYISYDALRANKVPCSRRGASYYNCQPGAEANPYDRGCSAIARCRS 119
           ILA  NYISY AL+ N +PCS+RGASYYNCQPGAEANPY RGCSAI RCRS
Sbjct: 69  ILATTNYISYGALQRNTIPCSQRGASYYNCQPGAEANPYSRGCSAITRCRS 116

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g05450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RALF_TOBAC	5.0e-25	54.39	Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1	[more]
RLF1_ARATH	6.5e-25	72.00	Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1	[more]
RLF33_ARATH	5.5e-24	54.95	Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1	[more]
RLF22_ARATH	7.2e-24	53.21	Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1	[more]
RLF23_ARATH	5.2e-22	57.78	Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1	[more]

BLAST of Cp4.1LG12g05450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K607_CUCSA	2.3e-40	73.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G396340 PE=4 SV=1	[more]
M5VTQ6_PRUPE	2.9e-27	66.02	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020353mg PE=4 SV=1	[more]
B9T0V9_RICCO	2.9e-27	60.36	RALFL33, putative OS=Ricinus communis GN=RCOM_1439830 PE=4 SV=1	[more]
A2Q327_MEDTR	1.9e-26	67.05	RALF OS=Medicago truncatula GN=MTR_7g113080 PE=2 SV=1	[more]
B9I9T7_POPTR	1.9e-26	65.35	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s12630g PE=4 SV=2	[more]

BLAST of Cp4.1LG12g05450 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G02900.1	3.7e-26	72.00	rapid alkalinization factor 1	[more]
AT4G15800.1	3.1e-25	54.95	ralf-like 33	[more]
AT3G05490.1	4.1e-25	53.21	ralf-like 22	[more]
AT3G16570.1	2.9e-23	57.78	rapid alkalinization factor 23	[more]
AT1G28270.1	5.9e-16	45.00	ralf-like 4	[more]

BLAST of Cp4.1LG12g05450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730402\|ref\|XP_011659776.1\|	3.2e-40	73.73	PREDICTED: rapid alkalinization factor [Cucumis sativus]	[more]
gi\|659101540\|ref\|XP_008451660.1\|	4.7e-39	72.88	PREDICTED: rapid alkalinization factor-like [Cucumis melo]	[more]
gi\|645258777\|ref\|XP_008235043.1\|	1.4e-27	63.96	PREDICTED: protein RALF-like 33 [Prunus mume]	[more]
gi\|595790681\|ref\|XP_007199089.1\|	4.1e-27	66.02	hypothetical protein PRUPE_ppa020353mg [Prunus persica]	[more]
gi\|255582168\|ref\|XP_002531878.1\|	4.1e-27	60.36	PREDICTED: protein RALF-like 33 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019722	calcium-mediated signaling
biological_process	GO:0007267	cell-cell signaling
biological_process	GO:0008150	biological_process
cellular_component	GO:0048046	apoplast
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005179	hormone activity
molecular_function	GO:0004871	signal transducer activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g05450.1	Cp4.1LG12g05450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 57..117 score: 9.8
None	No IPR available	PANTHER	PTHR33136	FAMILY NOT NAMED	coord: 7..118 score: 2.8
None	No IPR available	PANTHER	PTHR33136:SF5	PROTEIN RALF-LIKE 1-RELATED	coord: 7..118 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG12g05450	Cucsa.205730	Cucumber (Gy14) v1	cgycpeB0579
Cp4.1LG12g05450	Cucsa.097250	Cucumber (Gy14) v1	cgycpeB0185
Cp4.1LG12g05450	CmaCh14G008930	Cucurbita maxima (Rimu)	cmacpeB260
Cp4.1LG12g05450	CmaCh17G011040	Cucurbita maxima (Rimu)	cmacpeB371
Cp4.1LG12g05450	CmaCh08G004120	Cucurbita maxima (Rimu)	cmacpeB902
Cp4.1LG12g05450	CmoCh17G010790	Cucurbita moschata (Rifu)	cmocpeB335
Cp4.1LG12g05450	CmoCh14G009220	Cucurbita moschata (Rifu)	cmocpeB224
Cp4.1LG12g05450	Cla001316	Watermelon (97103) v1	cpewmB141
Cp4.1LG12g05450	Cla009305	Watermelon (97103) v1	cpewmB160
Cp4.1LG12g05450	Cla021738	Watermelon (97103) v1	cpewmB153
Cp4.1LG12g05450	Cla015049	Watermelon (97103) v1	cpewmB131
Cp4.1LG12g05450	Csa7G396340	Cucumber (Chinese Long) v2	cpecuB161
Cp4.1LG12g05450	Csa4G001640	Cucumber (Chinese Long) v2	cpecuB139
Cp4.1LG12g05450	MELO3C016020	Melon (DHL92) v3.5.1	cpemeB118
Cp4.1LG12g05450	MELO3C017971	Melon (DHL92) v3.5.1	cpemeB146
Cp4.1LG12g05450	ClCG10G010660	Watermelon (Charleston Gray)	cpewcgB134
Cp4.1LG12g05450	ClCG09G006060	Watermelon (Charleston Gray)	cpewcgB126
Cp4.1LG12g05450	CSPI07G17290	Wild cucumber (PI 183967)	cpecpiB163
Cp4.1LG12g05450	CSPI04G00690	Wild cucumber (PI 183967)	cpecpiB141
Cp4.1LG12g05450	Lsi03G010550	Bottle gourd (USVL1VR-Ls)	cpelsiB116
Cp4.1LG12g05450	Lsi02G023850	Bottle gourd (USVL1VR-Ls)	cpelsiB113
Cp4.1LG12g05450	MELO3C017971.2	Melon (DHL92) v3.6.1	cpemedB172
Cp4.1LG12g05450	MELO3C021331.2	Melon (DHL92) v3.6.1	cpemedB143
Cp4.1LG12g05450	MELO3C016020.2	Melon (DHL92) v3.6.1	cpemedB145
Cp4.1LG12g05450	CsaV3_4G000650	Cucumber (Chinese Long) v3	cpecucB0162
Cp4.1LG12g05450	Bhi01G000714	Wax gourd	cpewgoB0193
Cp4.1LG12g05450	CsGy7G015720	Cucumber (Gy14) v2	cgybcpeB906
Cp4.1LG12g05450	Carg11125	Silver-seed gourd	carcpeB1143
Cp4.1LG12g05450	Carg07186	Silver-seed gourd	carcpeB0158

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG12g05450	Wax gourd	cpewgoB0171
Cp4.1LG12g05450	Wax gourd	cpewgoB0210
Cp4.1LG12g05450	Cucurbita pepo (Zucchini)	cpecpeB157
Cp4.1LG12g05450	Cucurbita pepo (Zucchini)	cpecpeB193
Cp4.1LG12g05450	Cucumber (Gy14) v1	cgycpeB0669
Cp4.1LG12g05450	Cucurbita moschata (Rifu)	cmocpeB839
Cp4.1LG12g05450	Wild cucumber (PI 183967)	cpecpiB140
Cp4.1LG12g05450	Melon (DHL92) v3.5.1	cpemeB144
Cp4.1LG12g05450	Cucumber (Gy14) v2	cgybcpeB309
Cp4.1LG12g05450	Cucumber (Chinese Long) v3	cpecucB0188