CmaCh08G004120 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh08G004120
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRapid alkalinization factor
LocationCma_Chr08 : 2354289 .. 2354675 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAACTGCATGATGTACGATATGGAATTCGAGATGAACTCCGAACTCAATAGACGCATATTGGCAGATTTATACTACATAACCTATGATGCACTCAAGGCCAACAAGGGGCCATGCTCGTGCCAGACGCAGAGGCAAACCCCTACGACCGTGGCTGCAGTGCCATCACTCGTTGCCGAAGCTAACGACTCATGTTTACTTTAGCCAGAGATGAGCAGTTGTATGAAATAATCATAGAGTATAATCATCACTATATTGCCAATAAGAAATTATGCTGAAATAGCAGGTCCATGTCTAGAACATATTGTATTTTTCTGTCTCATCCTAAGCATTGACTTCAGCTTCACAAAGGCAATAGCGAAAAGACAACAAACTCATAAATAA

mRNA sequence

ATGGCAAACTGCATGATGTACGATATGGAATTCGAGATGAACTCCGAACTCAATAGACGCATATTGGCAGATTTATACTACATAACCTATGATGCACTCAAGGCCAACAAGGGGCCATGCTCGTGCCAGACGCAGAGGCAAACCCCTACGACCGTGGCTGCAGTGCCATCACTCGTTGCCGAAGCTAACGACTCATGTCCATGTCTAGAACATATTGTATTTTTCTGTCTCATCCTAAGCATTGACTTCAGCTTCACAAAGGCAATAGCGAAAAGACAACAAACTCATAAATAA

Coding sequence (CDS)

ATGGCAAACTGCATGATGTACGATATGGAATTCGAGATGAACTCCGAACTCAATAGACGCATATTGGCAGATTTATACTACATAACCTATGATGCACTCAAGGCCAACAAGGGGCCATGCTCGTGCCAGACGCAGAGGCAAACCCCTACGACCGTGGCTGCAGTGCCATCACTCGTTGCCGAAGCTAACGACTCATGTCCATGTCTAGAACATATTGTATTTTTCTGTCTCATCCTAAGCATTGACTTCAGCTTCACAAAGGCAATAGCGAAAAGACAACAAACTCATAAATAA

Protein sequence

MANCMMYDMEFEMNSELNRRILADLYYITYDALKANKGPCSCQTQRQTPTTVAAVPSLVAEANDSCPCLEHIVFFCLILSIDFSFTKAIAKRQQTHK
Homology
[Close]
BLAST of CmaCh08G004120 vs. TrEMBL
Match: A0A0A0K607_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G396340 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-08
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1 

Query: 1  MANCMMYDMEFEMNSELNRRILADLYYITYDALKANKGPCS 42
          MA CMM D+EF+M+SE+NRRILADL YI+YDALKAN  PCS
Sbjct: 42 MAECMMEDIEFQMDSEINRRILADLNYISYDALKANSVPCS 82

[Close]
BLAST of CmaCh08G004120 vs. NCBI nr
Match: gi|778730402|ref|XP_011659776.1| (PREDICTED: rapid alkalinization factor [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-08
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1 

Query: 1  MANCMMYDMEFEMNSELNRRILADLYYITYDALKANKGPCS 42
          MA CMM D+EF+M+SE+NRRILADL YI+YDALKAN  PCS
Sbjct: 42 MAECMMEDIEFQMDSEINRRILADLNYISYDALKANSVPCS 82

[Close]
BLAST of CmaCh08G004120 vs. NCBI nr
Match: gi|659101540|ref|XP_008451660.1| (PREDICTED: rapid alkalinization factor-like [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 7.8e-08
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 1 

Query: 1  MANCMMYDMEFEMNSELNRRILADLYYITYDALKANKGPCS 42
          MA CM  D+EFEM+SE+NRRILADL YI+YDAL+AN  PCS
Sbjct: 42 MAECMKEDIEFEMDSEINRRILADLNYISYDALRANSVPCS 82

The following BLAST results are available for this feature:
BLAST of CmaCh08G004120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh08G004120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K607_CUCSA1.1e-0875.61Uncharacterized protein OS=Cucumis sativus GN=Csa_7G396340 PE=4 SV=1[more]
BLAST of CmaCh08G004120 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh08G004120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778730402|ref|XP_011659776.1|1.6e-0875.61PREDICTED: rapid alkalinization factor [Cucumis sativus][more]
gi|659101540|ref|XP_008451660.1|7.8e-0873.17PREDICTED: rapid alkalinization factor-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G004120.1CmaCh08G004120.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 10..45
score: 1.
NoneNo IPR availableunknownCoilCoilcoord: 91..97
scor
NoneNo IPR availablePANTHERPTHR33136FAMILY NOT NAMEDcoord: 1..41
score: 8.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh08G004120CmoCh17G010790Cucurbita moschata (Rifu)cmacmoB896
CmaCh08G004120CmoCh08G004060Cucurbita moschata (Rifu)cmacmoB913
CmaCh08G004120Lsi02G023850Bottle gourd (USVL1VR-Ls)cmalsiB822
CmaCh08G004120Cp4.1LG12g05450Cucurbita pepo (Zucchini)cmacpeB902
CmaCh08G004120MELO3C016020.2Melon (DHL92) v3.6.1cmamedB930
CmaCh08G004120Cla97C09G168610Watermelon (97103) v2cmawmbB940
CmaCh08G004120Carg07186Silver-seed gourdcarcmaB0148
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh08G004120CmaCh17G011040Cucurbita maxima (Rimu)cmacmaB382
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh08G004120Wax gourdcmawgoB1087
CmaCh08G004120Wax gourdcmawgoB1119
CmaCh08G004120Cucurbita maxima (Rimu)cmacmaB293
CmaCh08G004120Wild cucumber (PI 183967)cmacpiB934
CmaCh08G004120Cucumber (Gy14) v1cgycmaB0206
CmaCh08G004120Cucumber (Gy14) v1cgycmaB0608
CmaCh08G004120Wild cucumber (PI 183967)cmacpiB913
CmaCh08G004120Cucumber (Chinese Long) v2cmacuB894
CmaCh08G004120Cucumber (Chinese Long) v2cmacuB914
CmaCh08G004120Melon (DHL92) v3.5.1cmameB831
CmaCh08G004120Melon (DHL92) v3.5.1cmameB854
CmaCh08G004120Watermelon (Charleston Gray)cmawcgB786
CmaCh08G004120Watermelon (97103) v1cmawmB856
CmaCh08G004120Cucurbita pepo (Zucchini)cmacpeB917
CmaCh08G004120Cucumber (Gy14) v2cgybcmaB973
CmaCh08G004120Cucumber (Chinese Long) v3cmacucB1062
CmaCh08G004120Cucumber (Chinese Long) v3cmacucB1084