MELO3C016020.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016020.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Rapid alkalinization factor
Location	chr01 : 32524031 .. 32524938 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATATAAATGATTAAAGAAGTGGATTGTATAGACATACCGGGAAGAGCAAGAGAGAAAGCAACAATGGCCGCCAAGGTTTCTTTTCTTCTTCCAATTTTCTTACTAGTTGCTATCCTGACGGTCTCCTCCACGGCCACGACCCCGAGCTGGGTCCTAGGTGGAGCTCATGCTCGTTGTCACGGATCCATGGCAGAGTGTATGAAGGAAGATATTGAATTTGAGATGGACTCTGAGATCAACAGACGCATATTAGCAGATTTAAACTACATAAGCTATGATGCACTCAGGGCCAACTCAGTGCCATGCTCACGCAAAGGAGCATCTTACTACAACTGTCAGCCAGGTGCCGAGGCAAACCCCTATGACCGTGGCTGTAATGCTATTTCTCGTTGTCGAAGCTAACTAGCTGTGTTTACTGTTTCACCAGATATGGGTAGTAGTAGTTGTATGAAGTCATCATAGAGTATAATCATCACTATATTATCAATAAGAAATCATGCAGAAACAGCAAGTCCAAGTTTATATCATATTGCTCTTTTCTGTTTCATTCTAAGCATTGGTTTCAACTTCACAAAGGCAATAGCAAAAAGAGAATATTGCAACAAACTCATCAATAAAATGAAACTCTCAACTATTTCTAGGCAGAACCTTCATCTTTCTTCACTTCATCTGCAACTGACTTTGATGGAGGTAGTGGTGACGGAGAGCCCTCGACACCCATCTCGGCCTTTAGATCATTGATGCTCTGCTCCAATTCATTTATGCGGCTCCCCATCTCATCGAGTATATTCAAGTTAAAGAAAGCTTATTTACTATAAGTTAACTAATTACAATAAAGCTATCCTACAATCTACTTCTCTTCCAATGTATCTGAAACCCAAAGTTGTATTAGAAAGTCAAAACATTC

mRNA sequence

AATATAAATGATTAAAGAAGTGGATTGTATAGACATACCGGGAAGAGCAAGAGAGAAAGCAACAATGGCCGCCAAGGTTTCTTTTCTTCTTCCAATTTTCTTACTAGTTGCTATCCTGACGGTCTCCTCCACGGCCACGACCCCGAGCTGGGTCCTAGGTGGAGCTCATGCTCGTTGTCACGGATCCATGGCAGAGTGTATGAAGGAAGATATTGAATTTGAGATGGACTCTGAGATCAACAGACGCATATTAGCAGATTTAAACTACATAAGCTATGATGCACTCAGGGCCAACTCAGTGCCATGCTCACGCAAAGGAGCATCTTACTACAACTGTCAGCCAGGTGCCGAGGCAAACCCCTATGACCGTGGCTGTAATGCTATTTCTCGTTGTCGAAGCTAACTAGCTGTGTTTACTGTTTCACCAGATATGGGTAGTAGTAGTTGTATGAAGTCATCATAGAGTATAATCATCACTATATTATCAATAAGAAATCATGCAGAAACAGCAAGTCCAAGTTTATATCATATTGCTCTTTTCTGTTTCATTCTAAGCATTGGTTTCAACTTCACAAAGGCAATAGCAAAAAGAGAATATTGCAACAAACTCATCAATAAAATGAAACTCTCAACTATTTCTAGGCAGAACCTTCATCTTTCTTCACTTCATCTGCAACTGACTTTGATGGAGGTAGTGGTGACGGAGAGCCCTCGACACCCATCTCGGCCTTTAGATCATTGATGCTCTGCTCCAATTCATTTATGCGGCTCCCCATCTCATCGAGTATATTCAAGTTAAAGAAAGCTTATTTACTATAAGTTAACTAATTACAATAAAGCTATCCTACAATCTACTTCTCTTCCAATGTATCTGAAACCCAAAGTTGTATTAGAAAGTCAAAACATTC

Coding sequence (CDS)

ATGATTAAAGAAGTGGATTGTATAGACATACCGGGAAGAGCAAGAGAGAAAGCAACAATGGCCGCCAAGGTTTCTTTTCTTCTTCCAATTTTCTTACTAGTTGCTATCCTGACGGTCTCCTCCACGGCCACGACCCCGAGCTGGGTCCTAGGTGGAGCTCATGCTCGTTGTCACGGATCCATGGCAGAGTGTATGAAGGAAGATATTGAATTTGAGATGGACTCTGAGATCAACAGACGCATATTAGCAGATTTAAACTACATAAGCTATGATGCACTCAGGGCCAACTCAGTGCCATGCTCACGCAAAGGAGCATCTTACTACAACTGTCAGCCAGGTGCCGAGGCAAACCCCTATGACCGTGGCTGTAATGCTATTTCTCGTTGTCGAAGCTAA

Protein sequence

MIKEVDCIDIPGRAREKATMAAKVSFLLPIFLLVAILTVSSTATTPSWVLGGAHARCHGSMAECMKEDIEFEMDSEINRRILADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS

Homology

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BLAST of MELO3C016020.2 vs. NCBI nr
Match: XP_008451660.1 (PREDICTED: rapid alkalinization factor-like [Cucumis melo])

HSP 1 Score: 227.6 bits (579), Expect = 2.4e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 20  MAAKVSFLLPIFLLVAILTVSSTATTPSWVLGGAHARCHGSMAECMKEDIEFEMDSEINR 79
           MAAKVSFLLPIFLLVAILTVSSTATTPSWVLGGAHARCHGSMAECMKEDIEFEMDSEINR
Sbjct: 1   MAAKVSFLLPIFLLVAILTVSSTATTPSWVLGGAHARCHGSMAECMKEDIEFEMDSEINR 60

Query: 80  RILADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS 132
           RILADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS
Sbjct: 61  RILADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS 112

[Close]

BLAST of MELO3C016020.2 vs. NCBI nr
Match: XP_011659776.1 (PREDICTED: rapid alkalinization factor [Cucumis sativus] >KGN44918.1 hypothetical protein Csa_7G396340 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 2.7e-52
Identity = 105/112 (93.75%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 20  MAAKVSFLLPIFLLVAILTVSSTATTPSWVLGGAHARCHGSMAECMKEDIEFEMDSEINR 79
           MA  VSFLLPIFLLVAILTVSSTA TPSWVL GAHARCHGSMAECM EDIEF+MDSEINR
Sbjct: 1   MATTVSFLLPIFLLVAILTVSSTAKTPSWVLDGAHARCHGSMAECMMEDIEFQMDSEINR 60

Query: 80  RILADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS 132
           RILADLNYISYDAL+ANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS
Sbjct: 61  RILADLNYISYDALKANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS 112

[Close]

BLAST of MELO3C016020.2 vs. NCBI nr
Match: XP_022153599.1 (protein RALF-like 33 [Momordica charantia])

HSP 1 Score: 183.7 bits (465), Expect = 4.0e-43
Identity = 91/118 (77.12%), Postives = 103/118 (87.29%), Query Frame = 0


Query: 20  MAAKVSFLLPIFLLVAILTVSSTAT------TPSWVLGGAHARCHGSMAECMKEDIEFEM 79
           MAAKVSFLLP  L+ AILTVSSTA       +PSWVL GA ARCHGSMAECM ++IE+EM
Sbjct: 1   MAAKVSFLLPFCLITAILTVSSTAVFAPSTESPSWVLDGARARCHGSMAECMMDEIEYEM 60

Query: 80  DSEINRRILADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS 132
           +SEINRRILA  NYISY+AL+AN+VPCSR+GASYYNCQPGAEANPYDRGC+AI+RCRS
Sbjct: 61  NSEINRRILATSNYISYEALKANTVPCSRRGASYYNCQPGAEANPYDRGCSAITRCRS 118

[Close]

BLAST of MELO3C016020.2 vs. NCBI nr
Match: XP_022953165.1 (rapid alkalinization factor-like [Cucurbita moschata])

HSP 1 Score: 179.1 bits (453), Expect = 9.7e-42
Identity = 89/118 (75.42%), Postives = 99/118 (83.90%), Query Frame = 0


Query: 20  MAAKVSFLLPIFLLVAILTVSSTATT------PSWVLGGAHARCHGSMAECMKEDIEFEM 79
           MAAK+SFLLP   + A LTV STA +      PSWVL  A A CHGSMA+CM +DIEF+M
Sbjct: 1   MAAKLSFLLPFCFIAAFLTVFSTAVSATTTKGPSWVLDRALATCHGSMADCMMDDIEFQM 60

Query: 80  DSEINRRILADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS 132
           DSEINRRILAD+NYISYDALRAN VPCSR+GASYYNCQPGAEANPYDRGC+AI+RCRS
Sbjct: 61  DSEINRRILADVNYISYDALRANKVPCSRRGASYYNCQPGAEANPYDRGCSAIARCRS 118

[Close]

BLAST of MELO3C016020.2 vs. NCBI nr
Match: OMO81895.1 (Rapid ALkalinization Factor [Corchorus olitorius])

HSP 1 Score: 135.2 bits (339), Expect = 1.6e-28
Identity = 66/101 (65.35%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 32  LLVAILTVSSTAT-TPSWVLGGAHARCHGSMAECMKEDIEFEMDSEINRRILADLNYISY 91
           L++A+ TV +TA    +WV     + C GSMAECM  D EF+MDSEINRRILA  NYISY
Sbjct: 19  LIIAMSTVDATADHNLNWVPTTTKSGCQGSMAECMVNDNEFDMDSEINRRILATSNYISY 78

Query: 92  DALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS 132
            AL+ N+VPCS++GASYYNCQPGA+ANPY+RGC+AI+RCRS
Sbjct: 79  GALQRNTVPCSQRGASYYNCQPGAQANPYNRGCSAITRCRS 119

[Close]

BLAST of MELO3C016020.2 vs. TAIR10
Match: AT4G15800.1 (ralf-like 33)

HSP 1 Score: 117.5 bits (293), Expect = 6.3e-27
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 29  PIFLLVAILTV----SSTATTPSWVLGGAHARCHGSMAEC--MKEDIEFEMDSEINRRIL 88
           P+ +++AILTV    ++  +  S       ++C+G++AEC     + EFEMDSEINRRIL
Sbjct: 8   PVAIIIAILTVHFLFAAVTSQSSGDFVPIESKCNGTIAECSLSTAEEEFEMDSEINRRIL 67

Query: 89  ADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCR 131
           A   YISY ALR N+VPCSR+GASYYNC+ GA+ANPY RGC+AI+RCR
Sbjct: 68  ATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115

[Close]

BLAST of MELO3C016020.2 vs. TAIR10
Match: AT1G02900.1 (rapid alkalinization factor 1)

HSP 1 Score: 115.2 bits (287), Expect = 3.1e-26
Identity = 62/115 (53.91%), Postives = 78/115 (67.83%), Query Frame = 0


Query: 30  IFLLVAILTVSSTATTP------------SWVLGGAH-ARCHGSMAECMKEDIEFEMDSE 89
           +FL + IL V   ++ P            +W   G + + CHGS+AEC+  + E EMDSE
Sbjct: 7   LFLTLTILVVFIISSPPVQAGFANDLGGVAWATTGDNGSGCHGSIAECIGAE-EEEMDSE 66

Query: 90  INRRILADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS 132
           INRRILA   YISY +L+ NSVPCSR+GASYYNCQ GA+ANPY RGC+ I+RCRS
Sbjct: 67  INRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCRS 120

[Close]

BLAST of MELO3C016020.2 vs. TAIR10
Match: AT3G05490.1 (ralf-like 22)

HSP 1 Score: 114.0 bits (284), Expect = 7.0e-26
Identity = 51/74 (68.92%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 57  CHGSMAECMKEDIEFEMDSEINRRILADLNYISYDALRANSVPCSRKGASYYNCQPGAEA 116
           C GS+AEC+ E+ E E DS+I+RRILA   YISY A+R NSVPCSR+GASYYNCQ GA+A
Sbjct: 45  CTGSIAECIAEEEEMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQA 104

Query: 117 NPYDRGCNAISRCR 131
           NPY RGC+ I+RCR
Sbjct: 105 NPYSRGCSTITRCR 118

[Close]

BLAST of MELO3C016020.2 vs. TAIR10
Match: AT3G16570.1 (rapid alkalinization factor 23)

HSP 1 Score: 105.5 bits (262), Expect = 2.5e-23
Identity = 59/124 (47.58%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 27  LLPIFLLVAI----LTVSSTATTPSWVLGGAHARCHGSMAECM----------------K 86
           +  I L++A+    + VSS +T  +         C G++AEC                 +
Sbjct: 13  IFAILLILAVHNWSVAVSSQSTEFAGDFPPFETECRGTIAECSVSAALGDGGDLFYGGGE 72

Query: 87  EDIEFEMDSEINRRILADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAI 131
              EFEMDSEINRRILA   YISY ALR N++PCSR+GASYYNC+ GA+ANPY RGC+AI
Sbjct: 73  MGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAI 132

[Close]

BLAST of MELO3C016020.2 vs. TAIR10
Match: AT2G33775.1 (ralf-like 19)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15
Identity = 44/105 (41.90%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 28  LPIFLLVAILTVSSTA--TTPSWVLGGAHARCHGSMAECMKEDIEFEMDSEINRR-ILAD 87
           + I L++ +LT++  A     +W L  +     G + E    ++++ MDSE NRR + A 
Sbjct: 3   IKILLILGLLTLAVVAESANATWTLTKSCVNGQGCIGE--DGELDYLMDSETNRRQLAAR 62

Query: 88  LNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRC 130
            +YISY ALR N+VPCSR+G SYY+C+    ANPY RGC+ I+ C
Sbjct: 63  RSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHC 105

[Close]

BLAST of MELO3C016020.2 vs. Swiss-Prot
Match: sp|Q945T0|RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.9e-26
Identity = 61/109 (55.96%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 28  LPIFLLVAILTVSSTATTPS----WVL-GGAHARCHGSMAECMKEDIEFEMDSEINRRIL 87
           L + +L+    +S  A   S    WV+   +   C GS+ EC+ E+ EFE+DSE NRRIL
Sbjct: 7   LILCVLIGAFFISMAAAGDSGAYDWVMPARSGGGCKGSIGECIAEEEEFELDSESNRRIL 66

Query: 88  ADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS 132
           A   YISY AL+ NSVPCSR+GASYYNC+PGA+ANPY RGC+AI+RCRS
Sbjct: 67  ATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRCRS 115

[Close]

BLAST of MELO3C016020.2 vs. Swiss-Prot
Match: sp|Q8L9P8|RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-25
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 29  PIFLLVAILTV----SSTATTPSWVLGGAHARCHGSMAEC--MKEDIEFEMDSEINRRIL 88
           P+ +++AILTV    ++  +  S       ++C+G++AEC     + EFEMDSEINRRIL
Sbjct: 8   PVAIIIAILTVHFLFAAVTSQSSGDFVPIESKCNGTIAECSLSTAEEEFEMDSEINRRIL 67

Query: 89  ADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCR 131
           A   YISY ALR N+VPCSR+GASYYNC+ GA+ANPY RGC+AI+RCR
Sbjct: 68  ATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115

[Close]

BLAST of MELO3C016020.2 vs. Swiss-Prot
Match: sp|Q9SRY3|RLF1_ARATH (Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.7e-25
Identity = 62/115 (53.91%), Postives = 78/115 (67.83%), Query Frame = 0


Query: 30  IFLLVAILTVSSTATTP------------SWVLGGAH-ARCHGSMAECMKEDIEFEMDSE 89
           +FL + IL V   ++ P            +W   G + + CHGS+AEC+  + E EMDSE
Sbjct: 7   LFLTLTILVVFIISSPPVQAGFANDLGGVAWATTGDNGSGCHGSIAECIGAE-EEEMDSE 66

Query: 90  INRRILADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS 132
           INRRILA   YISY +L+ NSVPCSR+GASYYNCQ GA+ANPY RGC+ I+RCRS
Sbjct: 67  INRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCRS 120

[Close]

BLAST of MELO3C016020.2 vs. Swiss-Prot
Match: sp|Q9MA62|RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-24
Identity = 51/74 (68.92%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 57  CHGSMAECMKEDIEFEMDSEINRRILADLNYISYDALRANSVPCSRKGASYYNCQPGAEA 116
           C GS+AEC+ E+ E E DS+I+RRILA   YISY A+R NSVPCSR+GASYYNCQ GA+A
Sbjct: 45  CTGSIAECIAEEEEMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQA 104

Query: 117 NPYDRGCNAISRCR 131
           NPY RGC+ I+RCR
Sbjct: 105 NPYSRGCSTITRCR 118

[Close]

BLAST of MELO3C016020.2 vs. Swiss-Prot
Match: sp|Q9LUS7|RLF23_ARATH (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.5e-22
Identity = 59/124 (47.58%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 27  LLPIFLLVAI----LTVSSTATTPSWVLGGAHARCHGSMAECM----------------K 86
           +  I L++A+    + VSS +T  +         C G++AEC                 +
Sbjct: 13  IFAILLILAVHNWSVAVSSQSTEFAGDFPPFETECRGTIAECSVSAALGDGGDLFYGGGE 72

Query: 87  EDIEFEMDSEINRRILADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAI 131
              EFEMDSEINRRILA   YISY ALR N++PCSR+GASYYNC+ GA+ANPY RGC+AI
Sbjct: 73  MGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAI 132

[Close]

BLAST of MELO3C016020.2 vs. TrEMBL
Match: tr|A0A1S3BRF1|A0A1S3BRF1_CUCME (rapid alkalinization factor-like OS=Cucumis melo OX=3656 GN=LOC103492893 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.6e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 20  MAAKVSFLLPIFLLVAILTVSSTATTPSWVLGGAHARCHGSMAECMKEDIEFEMDSEINR 79
           MAAKVSFLLPIFLLVAILTVSSTATTPSWVLGGAHARCHGSMAECMKEDIEFEMDSEINR
Sbjct: 1   MAAKVSFLLPIFLLVAILTVSSTATTPSWVLGGAHARCHGSMAECMKEDIEFEMDSEINR 60

Query: 80  RILADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS 132
           RILADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS
Sbjct: 61  RILADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS 112

[Close]

BLAST of MELO3C016020.2 vs. TrEMBL
Match: tr|A0A0A0K607|A0A0A0K607_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396340 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.8e-52
Identity = 105/112 (93.75%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 20  MAAKVSFLLPIFLLVAILTVSSTATTPSWVLGGAHARCHGSMAECMKEDIEFEMDSEINR 79
           MA  VSFLLPIFLLVAILTVSSTA TPSWVL GAHARCHGSMAECM EDIEF+MDSEINR
Sbjct: 1   MATTVSFLLPIFLLVAILTVSSTAKTPSWVLDGAHARCHGSMAECMMEDIEFQMDSEINR 60

Query: 80  RILADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS 132
           RILADLNYISYDAL+ANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS
Sbjct: 61  RILADLNYISYDALKANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS 112

[Close]

BLAST of MELO3C016020.2 vs. TrEMBL
Match: tr|A0A1R3IH61|A0A1R3IH61_9ROSI (Rapid ALkalinization Factor OS=Corchorus olitorius OX=93759 GN=COLO4_23376 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-28
Identity = 66/101 (65.35%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 32  LLVAILTVSSTAT-TPSWVLGGAHARCHGSMAECMKEDIEFEMDSEINRRILADLNYISY 91
           L++A+ TV +TA    +WV     + C GSMAECM  D EF+MDSEINRRILA  NYISY
Sbjct: 19  LIIAMSTVDATADHNLNWVPTTTKSGCQGSMAECMVNDNEFDMDSEINRRILATSNYISY 78

Query: 92  DALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS 132
            AL+ N+VPCS++GASYYNCQPGA+ANPY+RGC+AI+RCRS
Sbjct: 79  GALQRNTVPCSQRGASYYNCQPGAQANPYNRGCSAITRCRS 119

[Close]

BLAST of MELO3C016020.2 vs. TrEMBL
Match: tr|A0A1R3H0I9|A0A1R3H0I9_COCAP (Rapid ALkalinization Factor OS=Corchorus capsularis OX=210143 GN=CCACVL1_22264 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.1e-28
Identity = 70/118 (59.32%), Postives = 86/118 (72.88%), Query Frame = 0


Query: 20  MAAKVSFLLPI--FLLVAILTVSSTATTP----SWVLGGAHARCHGSMAECMKEDIEFEM 79
           MA    FLL +  FL   I+ +S+  T+     +WV     + C GSMAECM  D EF+M
Sbjct: 1   MAKPSVFLLAVSLFLTTLIIAMSTVDTSADHNLNWVPTTTKSGCQGSMAECMVNDNEFDM 60

Query: 80  DSEINRRILADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS 132
           DSEINRRILA  NYISY AL+ N+VPCS++GASYYNCQPGA+ANPY+RGC+AI+RCRS
Sbjct: 61  DSEINRRILATSNYISYGALQRNTVPCSQRGASYYNCQPGAQANPYNRGCSAITRCRS 118

[Close]

BLAST of MELO3C016020.2 vs. TrEMBL
Match: tr|A0A2G3AXI4|A0A2G3AXI4_CAPCH (Rapid alkalinization factor 23 OS=Capsicum chinense OX=80379 GN=BC332_32083 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.5e-27
Identity = 66/109 (60.55%), Postives = 79/109 (72.48%), Query Frame = 0


Query: 28  LPIFLLVAILTVSSTAT-----TPSWVLGGAHARCHGSMAECMKEDIEFEMDSEINRRIL 87
           L IFLLV    ++S A      T  W++      C GS+AECM E+ EFE+DSE NRRIL
Sbjct: 7   LVIFLLVGAAFLASMAAAGESGTYDWMMPVRSGECKGSIAECMAEEEEFELDSESNRRIL 66

Query: 88  ADLNYISYDALRANSVPCSRKGASYYNCQPGAEANPYDRGCNAISRCRS 132
           A   YISY AL+ NSVPCSR+GASYYNC+PGA+ANPY RGC+AI+RCRS
Sbjct: 67  ATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRCRS 115

The following BLAST results are available for this feature:

BLAST of MELO3C016020.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451660.1	2.4e-56	100.00	PREDICTED: rapid alkalinization factor-like [Cucumis melo]	[more]
XP_011659776.1	2.7e-52	93.75	PREDICTED: rapid alkalinization factor [Cucumis sativus] >KGN44918.1 hypothetica...	[more]
XP_022153599.1	4.0e-43	77.12	protein RALF-like 33 [Momordica charantia]	[more]
XP_022953165.1	9.7e-42	75.42	rapid alkalinization factor-like [Cucurbita moschata]	[more]
OMO81895.1	1.6e-28	65.35	Rapid ALkalinization Factor [Corchorus olitorius]	[more]

BLAST of MELO3C016020.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15800.1	6.3e-27	55.56	ralf-like 33	[more]
AT1G02900.1	3.1e-26	53.91	rapid alkalinization factor 1	[more]
AT3G05490.1	7.0e-26	68.92	ralf-like 22	[more]
AT3G16570.1	2.5e-23	47.58	rapid alkalinization factor 23	[more]
AT2G33775.1	1.1e-15	41.90	ralf-like 19	[more]

BLAST of MELO3C016020.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q945T0\|RALF_TOBAC	3.9e-26	55.96	Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1	[more]
sp\|Q8L9P8\|RLF33_ARATH	1.1e-25	55.56	Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1	[more]
sp\|Q9SRY3\|RLF1_ARATH	5.7e-25	53.91	Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1	[more]
sp\|Q9MA62\|RLF22_ARATH	1.3e-24	68.92	Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1	[more]
sp\|Q9LUS7\|RLF23_ARATH	4.5e-22	47.58	Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV...	[more]

BLAST of MELO3C016020.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BRF1\|A0A1S3BRF1_CUCME	1.6e-56	100.00	rapid alkalinization factor-like OS=Cucumis melo OX=3656 GN=LOC103492893 PE=4 SV...	[more]
tr\|A0A0A0K607\|A0A0A0K607_CUCSA	1.8e-52	93.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396340 PE=4 SV=1	[more]
tr\|A0A1R3IH61\|A0A1R3IH61_9ROSI	1.1e-28	65.35	Rapid ALkalinization Factor OS=Corchorus olitorius OX=93759 GN=COLO4_23376 PE=4 ...	[more]
tr\|A0A1R3H0I9\|A0A1R3H0I9_COCAP	3.1e-28	59.32	Rapid ALkalinization Factor OS=Corchorus capsularis OX=210143 GN=CCACVL1_22264 P...	[more]
tr\|A0A2G3AXI4\|A0A2G3AXI4_CAPCH	4.5e-27	60.55	Rapid alkalinization factor 23 OS=Capsicum chinense OX=80379 GN=BC332_32083 PE=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019722	calcium-mediated signaling
biological_process	GO:0008150	biological_process
biological_process	GO:0007267	cell-cell signaling
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0048046	apoplast
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005179	hormone activity
molecular_function	GO:0004871	signal transducer activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016020.2.1	MELO3C016020.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 70..130 e-value: 8.5E-28 score: 96.9
None	No IPR available	PANTHER	PTHR33136:SF4	SUBFAMILY NOT NAMED	coord: 26..131
None	No IPR available	PANTHER	PTHR33136	FAMILY NOT NAMED	coord: 26..131

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C016020.2	Csa7G396340	Cucumber (Chinese Long) v2	cumedB511
MELO3C016020.2	CSPI07G17290	Wild cucumber (PI 183967)	cpimedB525
MELO3C016020.2	Cucsa.205730	Cucumber (Gy14) v1	cgymedB368
MELO3C016020.2	CmaCh17G011040	Cucurbita maxima (Rimu)	cmamedB373
MELO3C016020.2	CmaCh08G004120	Cucurbita maxima (Rimu)	cmamedB930
MELO3C016020.2	CmoCh17G010790	Cucurbita moschata (Rifu)	cmomedB359
MELO3C016020.2	Lsi02G023850	Bottle gourd (USVL1VR-Ls)	lsimedB201
MELO3C016020.2	Cp4.1LG12g05450	Cucurbita pepo (Zucchini)	cpemedB145
MELO3C016020.2	CsGy7G015720	Cucumber (Gy14) v2	cgybmedB467
MELO3C016020.2	Cla015049	Watermelon (97103) v1	medwmB181
MELO3C016020.2	ClCG09G006060	Watermelon (Charleston Gray)	medwcgB155
MELO3C016020.2	Cla97C09G168610	Watermelon (97103) v2	medwmbB194
MELO3C016020.2	Carg07186	Silver-seed gourd	carmedB0112

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016020.2	Cucurbita moschata (Rifu)	cmomedB920
MELO3C016020.2	Cucurbita pepo (Zucchini)	cpemedB341
MELO3C016020.2	Cucumber (Chinese Long) v3	cucmedB538
MELO3C016020.2	Wax gourd	medwgoB255