Cp4.1LG01g01330 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g01330
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG01 : 3013916 .. 3015096 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCATGGCTACTTTCAAGACCTTCATTTTCATCTTCCTCATCTTCATATGCCCTAATTCAGGTGCTTTTTTCACTTCACATGGATGATTTATGATTAGGGTTTCTCTTAATTTTATGCTAATTTCTTGTTTAGATCTGAATTTTTCAACGTTAAAAGGGAAATTAGGGTTTGTGTTCTTTTTTTTTTGTAGGGGATGCTGATGGCCTGAGGTTGAAGGAAGGTTTGAAGCTACCAAACCCTTGTGGGCAGGTGAGAAAACCCTAATTAGGTTGGAACTTCAAGTTTCAAAAACGTTCAAAATATTAACTTTATGAACGTTTAGGGCATGAGATCGACATCTTATCTAGACAACGTTAAGACTTATACGACTCTAAGTTTATAAGTGAATGATTTAAGACGTCCAAATTTAGAAAAATTTTACGTTTTATGTGTAAGTTTGAGAACCGAGCTGAACTACCATTGGAAAATCCATGAATTTCATCGAACATGGATAGGGTAAACAAAATTTGAAATCTTAACCCAAATTGACTCTAGACCCGACACATCTTTTAAAATTTATTTGTGTTTTTATAAACTATAGACCCAATAGCGGAAAACCCTGATATTGATACCGATGGCTCAAATTTAGTGATAAACCCTTGAAAACATGATATATCAACTTTCTAATTAAGTTGGAACTTAATGAACGTTTAGGGCATGGGATCGACATCTTATCCTAGACAACGTTAAGACTCGAAGTGTATAGAAAAACTATGCATTTGAAGTGTAAGTTTAAAAACCTGGATGAACGACCATTGAAAAATCCATAAATTTCATCGATCTCGAATAGAGTAAACAAAATGTGAAATCTTAAACCAAACCGAGTCTCACCCAAACTTTCACCCGACACATCCCTTAAAATTGTGTTTGTGTTTATATAAATTATAGACCCGAGAGTGGAAAACACTAGTACTGATATCGATAGCTCAAATTCAGTGATAAACCCTCGAAAACAAATAGATATTTTTGTTACGAGTCAAAATGATGATCGATATCCACTTTCAAATTGCAGGTGATAATTGAAATGAAAGGTATAAGGAAGCTTTTGGGAGCAGAGGAATTGTTAGACTATGCAAGCCCAAGCCATAACCCAAGGCATGAGCCAAGGGTTGGGAACCCTGGAGGAAGAGCCTAA

mRNA sequence

ATGGCGTCCATGGCTACTTTCAAGACCTTCATTTTCATCTTCCTCATCTTCATATGCCCTAATTCAGGGGATGCTGATGGCCTGAGGTTGAAGGAAGGTTTGAAGCTACCAAACCCTTGTGGGCAGGTGATAATTGAAATGAAAGGTATAAGGAAGCTTTTGGGAGCAGAGGAATTGTTAGACTATGCAAGCCCAAGCCATAACCCAAGGCATGAGCCAAGGGTTGGGAACCCTGGAGGAAGAGCCTAA

Coding sequence (CDS)

ATGGCGTCCATGGCTACTTTCAAGACCTTCATTTTCATCTTCCTCATCTTCATATGCCCTAATTCAGGGGATGCTGATGGCCTGAGGTTGAAGGAAGGTTTGAAGCTACCAAACCCTTGTGGGCAGGTGATAATTGAAATGAAAGGTATAAGGAAGCTTTTGGGAGCAGAGGAATTGTTAGACTATGCAAGCCCAAGCCATAACCCAAGGCATGAGCCAAGGGTTGGGAACCCTGGAGGAAGAGCCTAA

Protein sequence

MASMATFKTFIFIFLIFICPNSGDADGLRLKEGLKLPNPCGQVIIEMKGIRKLLGAEELLDYASPSHNPRHEPRVGNPGGRA

Homology

[Close]

BLAST of Cp4.1LG01g01330 vs. TrEMBL
Match: A0A0A0KYH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055320 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.3e-22
Identity = 60/83 (72.29%), Postives = 64/83 (77.11%), Query Frame = 1


Query: 4  MATF-KTFIFIFLI-FICPNSGDADGLRLKEGLKLPNPCGQVIIEM--KGIRKLLGAEEL 63
          MA F KTFIFIFLI F+ PNSGDA  L LK+GLKL NPCGQ+I+E   K  RKLLGAE  
Sbjct: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60

Query: 64 LDYASPSHNPRHEPRVGNPGGRA 83
           DYASP HN RHEPR GNPGGRA
Sbjct: 61 ADYASPDHNTRHEPRFGNPGGRA 83

[Close]

BLAST of Cp4.1LG01g01330 vs. NCBI nr
Match: gi|700198279|gb|KGN53437.1| (hypothetical protein Csa_4G055320 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-21
Identity = 60/83 (72.29%), Postives = 64/83 (77.11%), Query Frame = 1


Query: 4  MATF-KTFIFIFLI-FICPNSGDADGLRLKEGLKLPNPCGQVIIEM--KGIRKLLGAEEL 63
          MA F KTFIFIFLI F+ PNSGDA  L LK+GLKL NPCGQ+I+E   K  RKLLGAE  
Sbjct: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60

Query: 64 LDYASPSHNPRHEPRVGNPGGRA 83
           DYASP HN RHEPR GNPGGRA
Sbjct: 61 ADYASPDHNTRHEPRFGNPGGRA 83

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g01330 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g01330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYH7_CUCSA	7.3e-22	72.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055320 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g01330 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g01330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198279\|gb\|KGN53437.1\|	1.0e-21	72.29	hypothetical protein Csa_4G055320 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g01330.1	Cp4.1LG01g01330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34467	FAMILY NOT NAMED	coord: 1..80 score: 9.7
None	No IPR available	PANTHER	PTHR34467:SF1	SUBFAMILY NOT NAMED	coord: 1..80 score: 9.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g01330	Cucsa.114720	Cucumber (Gy14) v1	cgycpeB0270
Cp4.1LG01g01330	CmaCh04G005810	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g01330	CmoCh16G005740	Cucurbita moschata (Rifu)	cmocpeB315
Cp4.1LG01g01330	CmoCh04G006200	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g01330	Cla012832	Watermelon (97103) v1	cpewmB412
Cp4.1LG01g01330	Csa4G055320	Cucumber (Chinese Long) v2	cpecuB399
Cp4.1LG01g01330	MELO3C016256	Melon (DHL92) v3.5.1	cpemeB426
Cp4.1LG01g01330	ClCG07G011330	Watermelon (Charleston Gray)	cpewcgB411
Cp4.1LG01g01330	CSPI04G06650	Wild cucumber (PI 183967)	cpecpiB396
Cp4.1LG01g01330	Lsi07G007500	Bottle gourd (USVL1VR-Ls)	cpelsiB372
Cp4.1LG01g01330	MELO3C016256.2	Melon (DHL92) v3.6.1	cpemedB498
Cp4.1LG01g01330	CsaV3_4G006870	Cucumber (Chinese Long) v3	cpecucB0496
Cp4.1LG01g01330	Bhi01G002329	Wax gourd	cpewgoB0521

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g01330	Cucurbita pepo (Zucchini)	cpecpeB236
Cp4.1LG01g01330	Cucurbita maxima (Rimu)	cmacpeB353
Cp4.1LG01g01330	Cucumber (Gy14) v2	cgybcpeB501
Cp4.1LG01g01330	Silver-seed gourd	carcpeB0061
Cp4.1LG01g01330	Silver-seed gourd	carcpeB0929
Cp4.1LG01g01330	Wax gourd	cpewgoB0509