Cla012832 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla012832
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr7 : 27152614 .. 27153707 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCATAGCTGCCTTCAAGACCTTCATTTTCATCTTCCTCATCTTCACTTCCCCTAATTCAGGTATACTTAATTAATTTAGATGCCACTTCACAAAAATTAGGGTTTTGTAAAATTTTTTGCTGCCCTATCTAGCTAAATTTCTATATCTTCTCTAGAAATTTGAATGCTAATTTTTCAATTGAGATCATCTCACCAAATCACTTTAGGGTTTAGATCTCCGAATATTTTTGGTCAATGTTCAAAATGGAAATTAGGGTTCCACAATTTTGTAATTTCTTTTTTTCTCCCTCTTTTTGTAGGGGATGCTGATGACCTGATCTTGAAGAAGGGTTTGAAGCTACCAAACCCTTGTGGGCAGGTGAGAAAAACTTTAAGTTGGAATTTCTTTTTCAAACATTGCAGGTGGAGATCAAATAATCAACATTTGAGATTGGACTTGGGTTCCATTATATCTACCGAGCTATGTTTTGATTGATGAAACTTCAAATTTTGAAACCATATTAGATTATATAATACCTAATTGTCAATTTGAGGCGCATGTTCGACATCTTTATGTTTGAAAATACTTAAGCTTAGCGTTTGAACGACTTGAAAACTTGGGTTTAGAAAAAATCTATAAATAGTCTTGTGTTTTAAAGAAAATTGTAAAATGATCTTGTCTGTCAACATATATTCATGGATTGGTCAAACAAATTAACCCTAGATGAGCAAACATGAGTTTGACATCTTAGGTCAAACTCACACCGAAATTAAACCTACGCTTTCACCCCAAACACATATCTTTAAAGCTCAACGTGCATTTGAAATAAGCTATAGATACGATGATACAAAAATATTGACATGGACGTCAATGACTCGAATCTAGCAATAAATCAAGAAACATATCATCCATTTATCTTCATGCATGAATGAACAAACAAGGTAAAACCATTATGATTATCATCATATCTTTAAATTACAGGCGATAGTTGAAAAGAACAAAGTGACAAGAAAGCTTTTGGGAGCAGAAGCATTTCTAGACTATGCAAGCCCAGACCATAACACAAGACATGAACCAAGAGTTGGAAACCCTGGAGGTAGAGCATAA

mRNA sequence

ATGGCCTCCATAGCTGCCTTCAAGACCTTCATTTTCATCTTCCTCATCTTCACTTCCCCTAATTCAGGGGATGCTGATGACCTGATCTTGAAGAAGGGTTTGAAGCTACCAAACCCTTGTGGGCAGGCGATAGTTGAAAAGAACAAAGTGACAAGAAAGCTTTTGGGAGCAGAAGCATTTCTAGACTATGCAAGCCCAGACCATAACACAAGACATGAACCAAGAGTTGGAAACCCTGGAGGTAGAGCATAA

Coding sequence (CDS)

ATGGCCTCCATAGCTGCCTTCAAGACCTTCATTTTCATCTTCCTCATCTTCACTTCCCCTAATTCAGGGGATGCTGATGACCTGATCTTGAAGAAGGGTTTGAAGCTACCAAACCCTTGTGGGCAGGCGATAGTTGAAAAGAACAAAGTGACAAGAAAGCTTTTGGGAGCAGAAGCATTTCTAGACTATGCAAGCCCAGACCATAACACAAGACATGAACCAAGAGTTGGAAACCCTGGAGGTAGAGCATAA

Protein sequence

MASIAAFKTFIFIFLIFTSPNSGDADDLILKKGLKLPNPCGQAIVEKNKVTRKLLGAEAFLDYASPDHNTRHEPRVGNPGGRA

Homology

[Close]

BLAST of Cla012832 vs. TrEMBL
Match: A0A0A0KYH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055320 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.4e-28
Identity = 71/83 (85.54%), Postives = 72/83 (86.75%), Query Frame = 1


Query: 4  IAAF-KTFIFIFLI-FTSPNSGDADDLILKKGLKLPNPCGQAIVEK-NKVTRKLLGAEAF 63
          +AAF KTFIFIFLI F  PNSGDA DL LKKGLKL NPCGQ IVEK NKVTRKLLGAEAF
Sbjct: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60

Query: 64 LDYASPDHNTRHEPRVGNPGGRA 84
           DYASPDHNTRHEPR GNPGGRA
Sbjct: 61 ADYASPDHNTRHEPRFGNPGGRA 83

[Close]

BLAST of Cla012832 vs. NCBI nr
Match: gi|700198279|gb|KGN53437.1| (hypothetical protein Csa_4G055320 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 3.4e-28
Identity = 71/83 (85.54%), Postives = 72/83 (86.75%), Query Frame = 1


Query: 4  IAAF-KTFIFIFLI-FTSPNSGDADDLILKKGLKLPNPCGQAIVEK-NKVTRKLLGAEAF 63
          +AAF KTFIFIFLI F  PNSGDA DL LKKGLKL NPCGQ IVEK NKVTRKLLGAEAF
Sbjct: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60

Query: 64 LDYASPDHNTRHEPRVGNPGGRA 84
           DYASPDHNTRHEPR GNPGGRA
Sbjct: 61 ADYASPDHNTRHEPRFGNPGGRA 83

The following BLAST results are available for this feature:

BLAST of Cla012832 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYH7_CUCSA	2.4e-28	85.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055320 PE=4 SV=1	[more]

BLAST of Cla012832 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198279\|gb\|KGN53437.1\|	3.4e-28	85.54	hypothetical protein Csa_4G055320 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla012832	Cla012832.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla012832	Cla97C07G138110	Watermelon (97103) v2	wmwmbB173
Cla012832	Csa4G055320	Cucumber (Chinese Long) v2	cuwmB305
Cla012832	MELO3C016257	Melon (DHL92) v3.5.1	mewmB516
Cla012832	ClCG07G011340	Watermelon (Charleston Gray)	wcgwmB371
Cla012832	CSPI04G06650	Wild cucumber (PI 183967)	cpiwmB308
Cla012832	Cucsa.114720	Cucumber (Gy14) v1	cgywmB170
Cla012832	CmaCh04G005810	Cucurbita maxima (Rimu)	cmawmB685
Cla012832	CmoCh16G005740	Cucurbita moschata (Rifu)	cmowmB308
Cla012832	CmoCh04G006200	Cucurbita moschata (Rifu)	cmowmB676
Cla012832	Lsi07G007490	Bottle gourd (USVL1VR-Ls)	lsiwmB434
Cla012832	Cp4.1LG01g01330	Cucurbita pepo (Zucchini)	cpewmB412
Cla012832	MELO3C016257.2	Melon (DHL92) v3.6.1	medwmB501
Cla012832	CsaV3_4G006870	Cucumber (Chinese Long) v3	cucwmB317
Cla012832	Bhi01G002329	Wax gourd	wgowmB197

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla012832	Silver-seed gourd	carwmB0047
Cla012832	Silver-seed gourd	carwmB0043
Cla012832	Silver-seed gourd	carwmB0654
Cla012832	Wax gourd	wgowmB183
Cla012832	Cucurbita maxima (Rimu)	cmawmB314
Cla012832	Cucurbita pepo (Zucchini)	cpewmB225
Cla012832	Cucumber (Gy14) v2	cgybwmB283