CmoCh04G006200 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G006200
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 3086684 .. 3088339 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCCATGGCTGCTTTCAAGACCTTCATTTTCATCTTCCTCATCTTCACATGCCCTAATTCAGGTGCTTTTTTCACTTCACATGGATGATTTATGATTAGGGTTTCTCTTAATTTTATGCTAATTTCTTGTTTAGATCTGAATTTTTCAATGTTAAAAGGGAAATTAGGGTTTGTGTTCTTTTTTTTTTTTTTTTTTTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAGGGGATGCTGATGGCCTGAGGTTGAAGGAAAGTTTGAAGCTACCAAACCCTTGTGGGCAGGTGAGAAAACCCTAATTAGGTTGGAACTTCGAATTTCAAAAACGTTCAAAATATTAACTTTATGAACGTTTAGGGCATGAGATCGACATCTTATCTAGACAACGTTAAGACTTATACGACTCTAAGTTTGTAAGGGAATGATTTAAGACGTCCACATTTAGAAAAATTTTACGTTTGAAGTGTAAGTTTGAGAACCGAGCTAAACTACTATTGAAAAATCCATGAATTTCATTAAACTTGGATAGGGTAAACAAAATTTGAAATCTTAAGCCAAATTGACTCTAGACCCGACACATCCCTTAAAATTTATTCGTGTTTGTATAAACTATAGACCCGATAGCGGAAAACCCTGATACTGATACCGATAGCTCAAATTTAGTGATAAACCCTTGAAAACATGATATATCAACTTTCTAATTAAGTTGGAACTTAATGAACGTTTAGGGCATGAGATCGACATCTTATCCTAGACAACGTTAAGACTCGAAGTGTATAGAAAAACTATGCATTTGAAGTGTAAGTTTAAAAACCCGGATGAACGACCATTGAAAAATCCATGAATTTCATCGATCTCGAATAGGGTAAACAAAATGTGAAATCTTAAGCCAAACCGAGTCTCACCCAAACGTTCACCCAACACAACCCTTAAAATTGTGTTTGTATAAACTATAGACCCGATAGTAGAAAACACTAGTATTGATATCGATAGCTCAAGTTAGTGATAAACCCTCAATAACAAATAGATATTCTTATTACGGGTCAAAGTCACGATCGATATGAACTTTGAAATTGCAGGTGATAATTGAAAAGAAAGGTGTAAGGAAGCTTTTGGGAGCAGAGGAATTGTTAGACTATGCAAGCCCAAGCCATAACCCAAGACATGAGCCAAGGGTTGGGAACCCTGGAGGAAGAGCCTAA

mRNA sequence

ATGGCGTCCATGGCTGCTTTCAAGACCTTCATTTTCATCTTCCTCATCTTCACATGCCCTAATTCAGGGGATGCTGATGGCCTGAGGTTGAAGGAAAGTTTGAAGCTACCAAACCCTTGTGGGCAGGTGATAATTGAAAAGAAAGGTGTAAGGAAGCTTTTGGGAGCAGAGGAATTGTTAGACTATGCAAGCCCAAGCCATAACCCAAGACATGAGCCAAGGGTTGGGAACCCTGGAGGAAGAGCCTAA

Coding sequence (CDS)

ATGGCGTCCATGGCTGCTTTCAAGACCTTCATTTTCATCTTCCTCATCTTCACATGCCCTAATTCAGGGGATGCTGATGGCCTGAGGTTGAAGGAAAGTTTGAAGCTACCAAACCCTTGTGGGCAGGTGATAATTGAAAAGAAAGGTGTAAGGAAGCTTTTGGGAGCAGAGGAATTGTTAGACTATGCAAGCCCAAGCCATAACCCAAGACATGAGCCAAGGGTTGGGAACCCTGGAGGAAGAGCCTAA
Homology
[Close]
BLAST of CmoCh04G006200 vs. TrEMBL
Match: A0A0A0KYH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055320 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.3e-22
Identity = 61/83 (73.49%), Postives = 64/83 (77.11%), Query Frame = 1 

Query: 4  MAAF-KTFIFIFLI-FTCPNSGDADGLRLKESLKLPNPCGQVIIEK--KGVRKLLGAEEL 63
          MAAF KTFIFIFLI F  PNSGDA  L LK+ LKL NPCGQ+I+EK  K  RKLLGAE  
Sbjct: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60

Query: 64 LDYASPSHNPRHEPRVGNPGGRA 83
           DYASP HN RHEPR GNPGGRA
Sbjct: 61 ADYASPDHNTRHEPRFGNPGGRA 83

[Close]
BLAST of CmoCh04G006200 vs. NCBI nr
Match: gi|700198279|gb|KGN53437.1| (hypothetical protein Csa_4G055320 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 4.7e-22
Identity = 61/83 (73.49%), Postives = 64/83 (77.11%), Query Frame = 1 

Query: 4  MAAF-KTFIFIFLI-FTCPNSGDADGLRLKESLKLPNPCGQVIIEK--KGVRKLLGAEEL 63
          MAAF KTFIFIFLI F  PNSGDA  L LK+ LKL NPCGQ+I+EK  K  RKLLGAE  
Sbjct: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60

Query: 64 LDYASPSHNPRHEPRVGNPGGRA 83
           DYASP HN RHEPR GNPGGRA
Sbjct: 61 ADYASPDHNTRHEPRFGNPGGRA 83

The following BLAST results are available for this feature:
BLAST of CmoCh04G006200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G006200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYH7_CUCSA3.3e-2273.49Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055320 PE=4 SV=1[more]
BLAST of CmoCh04G006200 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G006200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198279|gb|KGN53437.1|4.7e-2273.49hypothetical protein Csa_4G055320 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G006200.1CmoCh04G006200.1mRNA