Lsi07G007500 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G007500
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr07 : 8217265 .. 8217977 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAATTCCATGCTACTTAAGACCACCATTATTCTCTTCTTTATCATGATCCTCGTCTCCTCTTCCCTTAATTCAGGTACGTACTTTTCTCTCTTTTATTATTTCCCCATTTTCACTAACTTCATTCATTATTCTTAATTAAAATTTAGGCTGATTAAAGAAAATTAAGAAAAAAACAGATTGGTTTTGAAACAAATGAAAATTAACCCAATTATATGAAACGAATCCAAAATAATAACGTCGTTCAAGTTTACGAGGAGATTTGAACTTCTAACCTATACTATATGACCGGTTTAGTTAGACTCGTTTTAACCATTCTATTGTTATTATTATTATTATTATTTTTTTGTTATATAGAGAATAATGATCTCAATCTTAATGTAAACGAGTGATTTATGATGATATTCCATTGCAGAAGGAGTTCATGGCCTGAGCTTAAAGGAGGGTTTAAATGAAGAACCAAATCCTTGTGGTCAGGTAATATTAAGATAATTAATTTTTTTAAAAAAGAAAAACATTAAAATTAAAGTATTAGGTTGTGTTTAAAAGTTGCATTTATCTAAATTTGGTTGTGTTAATTTTGGCAGAGAATTGGGAGAAAGATTTTGGGAAATGAAGCAATGTTGATGGATTACAATGAACCAAGTGCTAACCCAAGTCACGAGCCAAGAAAAGGAACTCCTGGAGGTCGAGCAAGCTTCAACCCATGA

mRNA sequence

ATGCCCAATTCCATGCTACTTAAGACCACCATTATTCTCTTCTTTATCATGATCCTCGTCTCCTCTTCCCTTAATTCAGAAGGAGTTCATGGCCTGAGCTTAAAGGAGGGTTTAAATGAAGAACCAAATCCTTGTGGTCAGAGAATTGGGAGAAAGATTTTGGGAAATGAAGCAATGTTGATGGATTACAATGAACCAAGTGCTAACCCAAGTCACGAGCCAAGAAAAGGAACTCCTGGAGGTCGAGCAAGCTTCAACCCATGA

Coding sequence (CDS)

ATGCCCAATTCCATGCTACTTAAGACCACCATTATTCTCTTCTTTATCATGATCCTCGTCTCCTCTTCCCTTAATTCAGAAGGAGTTCATGGCCTGAGCTTAAAGGAGGGTTTAAATGAAGAACCAAATCCTTGTGGTCAGAGAATTGGGAGAAAGATTTTGGGAAATGAAGCAATGTTGATGGATTACAATGAACCAAGTGCTAACCCAAGTCACGAGCCAAGAAAAGGAACTCCTGGAGGTCGAGCAAGCTTCAACCCATGA

Protein sequence

MPNSMLLKTTIILFFIMILVSSSLNSEGVHGLSLKEGLNEEPNPCGQRIGRKILGNEAMLMDYNEPSANPSHEPRKGTPGGRASFNP
Homology
[Close]
BLAST of Lsi07G007500 vs. TrEMBL
Match: A0A0A0KYH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055320 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-06
Identity = 36/76 (47.37%), Postives = 44/76 (57.89%), Query Frame = 1 

Query: 15 FIMILVSSSLNSEGVHGLSLKEGLNEEPNPCGQ-------RIGRKILGNEAMLMDYNEPS 74
          FI +++    NS   H LSLK+GL +  NPCGQ       ++ RK+LG EA   DY  P 
Sbjct: 10 FIFLIIFMFPNSGDAHDLSLKKGL-KLSNPCGQLIVEKNNKVTRKLLGAEA-FADYASPD 69

Query: 75 ANPSHEPRKGTPGGRA 84
           N  HEPR G PGGRA
Sbjct: 70 HNTRHEPRFGNPGGRA 83

[Close]
BLAST of Lsi07G007500 vs. NCBI nr
Match: gi|700198279|gb|KGN53437.1| (hypothetical protein Csa_4G055320 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-06
Identity = 36/76 (47.37%), Postives = 44/76 (57.89%), Query Frame = 1 

Query: 15 FIMILVSSSLNSEGVHGLSLKEGLNEEPNPCGQ-------RIGRKILGNEAMLMDYNEPS 74
          FI +++    NS   H LSLK+GL +  NPCGQ       ++ RK+LG EA   DY  P 
Sbjct: 10 FIFLIIFMFPNSGDAHDLSLKKGL-KLSNPCGQLIVEKNNKVTRKLLGAEA-FADYASPD 69

Query: 75 ANPSHEPRKGTPGGRA 84
           N  HEPR G PGGRA
Sbjct: 70 HNTRHEPRFGNPGGRA 83

The following BLAST results are available for this feature:
BLAST of Lsi07G007500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi07G007500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYH7_CUCSA2.7e-0647.37Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055320 PE=4 SV=1[more]
BLAST of Lsi07G007500 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi07G007500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198279|gb|KGN53437.1|3.8e-0647.37hypothetical protein Csa_4G055320 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G007500.1Lsi07G007500.1mRNA