CmaCh04G005810 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G005810
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr04 : 2953536 .. 2954717 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCATGGCTGCTTTCAAGCCCTTCATTTTCATCTTCCTCATCTTCACATGCCCTAATTCAGGTGCTTTTTTCACTTCACAAGGATGATTTGTGATTAGGGTTTCTCTTAATTATATGCTAATTTCTTGTTTTGATCTGTATTTTTCAATGTTAAAAGGGAAATTAGGGTTTGTGTTCATCTTTTTTTGTAGGGGATGCTGATGGCTTGAGCTTGAAGGAAGGTTTGAAGCTACCAAACCCTTGTGGACAGGTGAGATAACCCTAATTAGGTTGGAGCTGCAAATTTCAAAAACATTCAAAATATTAACTTTATGATCGTTTAGGGCATGAGATCGACATCTTATCTAAACAACGTTAAGACTTATACGACTCTAAGTTTATTAGGGAATGATTTAAGACATCCAAATTTAGAAAAAGTATACATTTGAAGTGTAAGTTTGAGAACCCAGCTGAACTACCATTGGAAAATCCATGAATTTCATCGAACCCAGATAGGGTAAACAAAATTTGAAATCTTAAGCCAAATTGATTCTCACCCGAACTCTCACCCGACACATCCCTTAAAATTGTGTTTGTGTTTGTATAAACTATAGACTCGATAGCGGAAAACATTGATATTGATATTGATAGCTTAAATTTAGTGATAAACTCTCGAAAACATGATATATCAACTTTCTAATTAAGTTGGGACTTAATGAACGTTTAGGGTATGGGATCGGCATCTTATCTAGATAACGTTAAGACTCTAAGTTTATAAGTGTATAGAAAAACTATGCATTTGAAGTGTAAGTTTAAAATCCTCGATGAATGACCATTGAAAAATCCATGAATTTGGTTGAGCTCAAATAGGGTAAACAAAATTTGAAATCTTAAGCCAAACCGACTCTCACCCGACACAACCCTTAAAATTGTGTTTGTGTTTGTATAAACTATAGACCCGATAGTGGAAAACACTTGCAATGATATCGATAGCTCAAATTCAGTGATAAACCCTCGAAAACAAATAGATATTCTTGTTACGAGCCAAAATGATGATCAAGTTTCAAATTGCAGGTGATAATTGAAAAGAAAGGTGCAAGGAAGCTTTTGGGAGCAGAGGAATTGTTAGACTATGCAAGCCCAAACCATAACCCAAGACATGAGCCAAGGGTTGGGAACCCTGGAGGAAGAGCCTGA

mRNA sequence

ATGGCGTCCATGGCTGCTTTCAAGCCCTTCATTTTCATCTTCCTCATCTTCACATGCCCTAATTCAGGGGATGCTGATGGCTTGAGCTTGAAGGAAGGTTTGAAGCTACCAAACCCTTGTGGACAGGTGATAATTGAAAAGAAAGGTGCAAGGAAGCTTTTGGGAGCAGAGGAATTGTTAGACTATGCAAGCCCAAACCATAACCCAAGACATGAGCCAAGGGTTGGGAACCCTGGAGGAAGAGCCTGA

Coding sequence (CDS)

ATGGCGTCCATGGCTGCTTTCAAGCCCTTCATTTTCATCTTCCTCATCTTCACATGCCCTAATTCAGGGGATGCTGATGGCTTGAGCTTGAAGGAAGGTTTGAAGCTACCAAACCCTTGTGGACAGGTGATAATTGAAAAGAAAGGTGCAAGGAAGCTTTTGGGAGCAGAGGAATTGTTAGACTATGCAAGCCCAAACCATAACCCAAGACATGAGCCAAGGGTTGGGAACCCTGGAGGAAGAGCCTGA

Protein sequence

MASMAAFKPFIFIFLIFTCPNSGDADGLSLKEGLKLPNPCGQVIIEKKGARKLLGAEELLDYASPNHNPRHEPRVGNPGGRA

Homology

[Close]

BLAST of CmaCh04G005810 vs. TrEMBL
Match: A0A0A0KYH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055320 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.6e-23
Identity = 62/83 (74.70%), Postives = 66/83 (79.52%), Query Frame = 1


Query: 4  MAAF-KPFIFIFLI-FTCPNSGDADGLSLKEGLKLPNPCGQVIIEK--KGARKLLGAEEL 63
          MAAF K FIFIFLI F  PNSGDA  LSLK+GLKL NPCGQ+I+EK  K  RKLLGAE  
Sbjct: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60

Query: 64 LDYASPNHNPRHEPRVGNPGGRA 83
           DYASP+HN RHEPR GNPGGRA
Sbjct: 61 ADYASPDHNTRHEPRFGNPGGRA 83

[Close]

BLAST of CmaCh04G005810 vs. NCBI nr
Match: gi|700198279|gb|KGN53437.1| (hypothetical protein Csa_4G055320 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 9.5e-23
Identity = 62/83 (74.70%), Postives = 66/83 (79.52%), Query Frame = 1


Query: 4  MAAF-KPFIFIFLI-FTCPNSGDADGLSLKEGLKLPNPCGQVIIEK--KGARKLLGAEEL 63
          MAAF K FIFIFLI F  PNSGDA  LSLK+GLKL NPCGQ+I+EK  K  RKLLGAE  
Sbjct: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60

Query: 64 LDYASPNHNPRHEPRVGNPGGRA 83
           DYASP+HN RHEPR GNPGGRA
Sbjct: 61 ADYASPDHNTRHEPRFGNPGGRA 83

The following BLAST results are available for this feature:

BLAST of CmaCh04G005810 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G005810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYH7_CUCSA	6.6e-23	74.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055320 PE=4 SV=1	[more]

BLAST of CmaCh04G005810 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G005810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198279\|gb\|KGN53437.1\|	9.5e-23	74.70	hypothetical protein Csa_4G055320 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G005810.1	CmaCh04G005810.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G005810	Cucsa.114720	Cucumber (Gy14) v1	cgycmaB0280
CmaCh04G005810	Cla012832	Watermelon (97103) v1	cmawmB685
CmaCh04G005810	Csa4G055320	Cucumber (Chinese Long) v2	cmacuB708
CmaCh04G005810	MELO3C016256	Melon (DHL92) v3.5.1	cmameB704
CmaCh04G005810	ClCG07G011340	Watermelon (Charleston Gray)	cmawcgB675
CmaCh04G005810	CSPI04G06650	Wild cucumber (PI 183967)	cmacpiB714
CmaCh04G005810	CmoCh16G005740	Cucurbita moschata (Rifu)	cmacmoB703
CmaCh04G005810	CmoCh04G006200	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G005810	Lsi07G007500	Bottle gourd (USVL1VR-Ls)	cmalsiB695
CmaCh04G005810	Cp4.1LG01g01330	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G005810	MELO3C016256.2	Melon (DHL92) v3.6.1	cmamedB793
CmaCh04G005810	CsaV3_4G006870	Cucumber (Chinese Long) v3	cmacucB0841
CmaCh04G005810	Cla97C07G138100	Watermelon (97103) v2	cmawmbB782
CmaCh04G005810	Bhi01G002329	Wax gourd	cmawgoB0857

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G005810	CmaCh16G005250	Cucurbita maxima (Rimu)	cmacmaB353

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G005810	Wax gourd	cmawgoB0847
CmaCh04G005810	Cucurbita pepo (Zucchini)	cmacpeB717
CmaCh04G005810	Cucumber (Gy14) v2	cgybcmaB541
CmaCh04G005810	Silver-seed gourd	carcmaB0055
CmaCh04G005810	Silver-seed gourd	carcmaB0927