Csa4G055320 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G055320
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 4580769 .. 4582085 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCTTTATCAAGACCTTCATTTTCATCTTCCTCATCATCTTCATGTTCCCTAATTCAGGTATACTGTAGATTAGATATTCGAGTTCATTTACTAATTTTTCTATCATTTTGTTTTTTTGTTTGAAAACAAGTGTACATCACTTCATAAGAATTAGGGTTTTGTAAAAAAATTGTTGTCCTAACTTTAATTTATATCTTTTTCAATTGAGATCATCTCACAAATTACTTTAGGGTTTAGATCTCTCTATCCGGGTCAGTGTTCAAAAATGGAAACTAGGGTTCCATAATTTTGCAATTTATTTTTTCTCCCTTTTTTTTGTAGGGGACGCTCATGACCTGAGCTTGAAGAAGGGTTTGAAGCTTTCAAACCCTTGTGGACAGGTGAGAAAAACCCTAATCTGGATTCTTTTTCAAACATTCCAAGTGGAGATCAAACTATCAACATTTAAATTTGAACTTGATTCTATTATATATACTCAACAATTAAACTTCAAAATTTGAAACCTAATTGTCGTTTGAGGTGCATGTTCAACTTCTTTATGTTTTGGAAAATTCTTAAGCTTCTATTAACAACTTAGCTAGTTTTCGAGTTCAAATGTTCGCCCATATTTGTACTTAATTTAAAAAGTTCTTTACAAAATAACTAAGCTTAGGGTTTGAACGATCTAGAGAAGCACTTGGGTTTGGGTTTAGAAAATTGTGGATAAATTAAAAACTCTTTTCTTAAAAGAAAATTGAGAAGCAAATAAAATTTATTTTGATTTTAATTTATCAACGTTCGTGGATTTGCCTAACAAATTAACCCTAGATGAGCAACCATGAGTTCGGCTTTAAAACCTAACCTTTTCACTCCAAACACATTCTTAAAGCTATTGATTTGCATTTGAAATAAACCGTTAGACGTTTTTCTTTGAAAAAGATGCGTTGGATCAGGTATACCCGAACATGTCCACTAGATGGACACCCCTTAGAATCTTCATCATTCCCACTTTCATTAATATAGAAAGAACTAGTACAACAAGAGACAATACAAATATAAAATATTAATATCCACATCAAGATAACTCAAATTTAGCAATAAATCAAGAAACATATCATGCATCCATTTATATCAATGCATGAATGAACAAATTAAACCAGGTATAAAATCATTTATAATTGACCATACTCTTGAAATTACAGTTGATAGTTGAAAAGAACAACAAAGTGACAAGAAAGCTTTTGGGAGCAGAAGCATTTGCAGACTATGCAAGCCCAGATCATAACACAAGACATGAGCCAAGGTTTGGAAACCCCGGAGGTAGAGCTTAA

mRNA sequence

ATGGCTGCCTTTATCAAGACCTTCATTTTCATCTTCCTCATCATCTTCATGTTCCCTAATTCAGGGGACGCTCATGACCTGAGCTTGAAGAAGGGTTTGAAGCTTTCAAACCCTTGTGGACAGTTGATAGTTGAAAAGAACAACAAAGTGACAAGAAAGCTTTTGGGAGCAGAAGCATTTGCAGACTATGCAAGCCCAGATCATAACACAAGACATGAGCCAAGGTTTGGAAACCCCGGAGGTAGAGCTTAA

Coding sequence (CDS)

ATGGCTGCCTTTATCAAGACCTTCATTTTCATCTTCCTCATCATCTTCATGTTCCCTAATTCAGGGGACGCTCATGACCTGAGCTTGAAGAAGGGTTTGAAGCTTTCAAACCCTTGTGGACAGTTGATAGTTGAAAAGAACAACAAAGTGACAAGAAAGCTTTTGGGAGCAGAAGCATTTGCAGACTATGCAAGCCCAGATCATAACACAAGACATGAGCCAAGGTTTGGAAACCCCGGAGGTAGAGCTTAA

Protein sequence

MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAFADYASPDHNTRHEPRFGNPGGRA*

Homology

[Close]

BLAST of Csa4G055320 vs. TrEMBL
Match: A0A0A0KYH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055320 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.6e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60
          MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF
Sbjct: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60

Query: 61 ADYASPDHNTRHEPRFGNPGGRA 84
          ADYASPDHNTRHEPRFGNPGGRA
Sbjct: 61 ADYASPDHNTRHEPRFGNPGGRA 83

[Close]

BLAST of Csa4G055320 vs. NCBI nr
Match: gi|700198279|gb|KGN53437.1| (hypothetical protein Csa_4G055320 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 2.3e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60
          MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF
Sbjct: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60

Query: 61 ADYASPDHNTRHEPRFGNPGGRA 84
          ADYASPDHNTRHEPRFGNPGGRA
Sbjct: 61 ADYASPDHNTRHEPRFGNPGGRA 83

The following BLAST results are available for this feature:

BLAST of Csa4G055320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYH7_CUCSA	1.6e-40	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055320 PE=4 SV=1	[more]

BLAST of Csa4G055320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198279\|gb\|KGN53437.1\|	2.3e-40	100.00	hypothetical protein Csa_4G055320 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G055320.1	Csa4G055320.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G055320	Cla012832	Watermelon (97103) v1	cuwmB305
Csa4G055320	MELO3C016257	Melon (DHL92) v3.5.1	cumeB312
Csa4G055320	ClCG07G011340	Watermelon (Charleston Gray)	cuwcgB324
Csa4G055320	Lsi07G007490	Bottle gourd (USVL1VR-Ls)	culsiB304
Csa4G055320	MELO3C016257.2	Melon (DHL92) v3.6.1	cumedB301
Csa4G055320	Cla97C07G138110	Watermelon (97103) v2	cuwmbB321
Csa4G055320	Bhi01G002329	Wax gourd	cuwgoB365
Csa4G055320	CSPI04G06650	Wild cucumber (PI 183967)	cpicuB182
Csa4G055320	Cucsa.114720	Cucumber (Gy14) v1	cgycuB146
Csa4G055320	CmaCh04G005810	Cucurbita maxima (Rimu)	cmacuB708
Csa4G055320	CmoCh04G006200	Cucurbita moschata (Rifu)	cmocuB699
Csa4G055320	CmoCh16G005740	Cucurbita moschata (Rifu)	cmocuB325
Csa4G055320	Cp4.1LG01g01330	Cucurbita pepo (Zucchini)	cpecuB399

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G055320	Silver-seed gourd	carcuB0047
Csa4G055320	Silver-seed gourd	carcuB0677
Csa4G055320	Wax gourd	cuwgoB382
Csa4G055320	Cucurbita maxima (Rimu)	cmacuB337
Csa4G055320	Cucurbita pepo (Zucchini)	cpecuB221
Csa4G055320	Cucumber (Gy14) v2	cgybcuB165