CSPI04G06650 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G06650
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr4 : 4670852 .. 4672175 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCTTTATCAAGACCTTCATTTTCATCTTCCTCATCACCTTCATGTTCCCTAATTCAGGTATACTGTAGATTAGATATTCGAGTTCATTTATTAATTTTTCTATCATTTTGTTTTTTTGTTTGAAAACAAGTGTACATCACTTCATAAGAATTAGGGTTTTGTAAAAAAATTGTTGTCCTAACTTTAATTTATATCTTTTTCAATTGAGATCATCTCACAAATTACTTTAGGGTTTTTAGATCTCTCTATCCGGGTCAGTGTTCAAAATGGAAACTAGGGTTCCATAATTTTGCAATTTATTTTTTCTCCCTTTTTTTGTAGGGGACGCTCATGACCTGAGCTTGAAGAAGGGTTTGAAGCTTTCAAACCCTTGTGGACAGGTGAGAAAAACCCTAATCTGGATTCTTTTTCAAACATTCCAAGTGGAGATCAAACTATCAACATTTAAATTTGAACTTGATTCTATTATATATACTCAACAATTAAACTTCAAAATTTGAAACGTAATTGTCGTTTGAGGTGCATGTTCAACTTGTTTATGTTTTGGAAAATTCTTAAGCTTCTATTAACAACTTAGCTAGTTTTCGAGTTCAAATGTTCGCCCATATTTGTACTTAATTTAAAAAGTTCTTTACAAGATAACTAAGCTTAGGGTTTGAACGATCTAGAGAAGCACTTGGGTTTGGGTTTAGAAAATTGTGGATAAATTAAAAACTCTTTTCTTAAAAGAAAATTGAGAAGCAAATAAAATTTATTTTGATTTTAATTTATCAACGTTCGTGGATTTGCCTAACAAATTAACCCTAGATGAGCAACCATGAGTTCGGCTTTAAAACCTAACCTTTTCACTCCAAACACATTCTTAAAGCTATTGATTTGCATTTGAAATAAACCGTTGACGTTTTTCTTTGAAAAAGATGCATTGGATCAGCAGGTGTACCCGAACATCTCCACTAGGTGGACACCCCTTAGAATCTTCATCATTCCCACTCTCATTAATATAGAAAGAACTAGTACAACAAGAGACAATACAAATATAAAAATATTAATATCGATCCACATCAAGATAACTCGAATTTAGCAATAAATCAAGAAACATATCATGCATCCATTTATATCAATGCATGAATGAACAAATTAAACCAGGTATAAAATCATTTATAATTGACCATACTCTTGAAATTACAGTTGATAGTTGAAAAGAACAACAAAGTGACAAGAAAGCTTTTGGGAGCAGAAGCATTTGCAGACTATGCAAGCCCAGATCATAACACAAGACATGAGCCAAGGTTTGGAAACCCCGGAGGTAGAGCTTAA

mRNA sequence

ATGGCTGCCTTTATCAAGACCTTCATTTTCATCTTCCTCATCACCTTCATGTTCCCTAATTCAGGGGACGCTCATGACCTGAGCTTGAAGAAGGGTTTGAAGCTTTCAAACCCTTGTGGACAGTTGATAGTTGAAAAGAACAACAAAGTGACAAGAAAGCTTTTGGGAGCAGAAGCATTTGCAGACTATGCAAGCCCAGATCATAACACAAGACATGAGCCAAGGTTTGGAAACCCCGGAGGTAGAGCTTAA

Coding sequence (CDS)

ATGGCTGCCTTTATCAAGACCTTCATTTTCATCTTCCTCATCACCTTCATGTTCCCTAATTCAGGGGACGCTCATGACCTGAGCTTGAAGAAGGGTTTGAAGCTTTCAAACCCTTGTGGACAGTTGATAGTTGAAAAGAACAACAAAGTGACAAGAAAGCTTTTGGGAGCAGAAGCATTTGCAGACTATGCAAGCCCAGATCATAACACAAGACATGAGCCAAGGTTTGGAAACCCCGGAGGTAGAGCTTAA

Homology

[Close]

BLAST of CSPI04G06650 vs. TrEMBL
Match: A0A0A0KYH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055320 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.4e-39
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 1  MAAFIKTFIFIFLITFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60
          MAAFIKTFIFIFLI FMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF
Sbjct: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60

Query: 61 ADYASPDHNTRHEPRFGNPGGRA 84
          ADYASPDHNTRHEPRFGNPGGRA
Sbjct: 61 ADYASPDHNTRHEPRFGNPGGRA 83

[Close]

BLAST of CSPI04G06650 vs. NCBI nr
Match: gi|700198279|gb|KGN53437.1| (hypothetical protein Csa_4G055320 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 1.9e-39
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 1  MAAFIKTFIFIFLITFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60
          MAAFIKTFIFIFLI FMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF
Sbjct: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60

Query: 61 ADYASPDHNTRHEPRFGNPGGRA 84
          ADYASPDHNTRHEPRFGNPGGRA
Sbjct: 61 ADYASPDHNTRHEPRFGNPGGRA 83

The following BLAST results are available for this feature:

BLAST of CSPI04G06650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G06650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYH7_CUCSA	1.4e-39	98.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055320 PE=4 SV=1	[more]

BLAST of CSPI04G06650 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G06650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198279\|gb\|KGN53437.1\|	1.9e-39	98.80	hypothetical protein Csa_4G055320 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G06650.1	CSPI04G06650.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G06650	Cla012832	Watermelon (97103) v1	cpiwmB308
CSPI04G06650	Csa4G055320	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G06650	MELO3C016257	Melon (DHL92) v3.5.1	cpimeB310
CSPI04G06650	ClCG07G011340	Watermelon (Charleston Gray)	cpiwcgB341
CSPI04G06650	Lsi07G007490	Bottle gourd (USVL1VR-Ls)	cpilsiB304
CSPI04G06650	MELO3C016257.2	Melon (DHL92) v3.6.1	cpimedB305
CSPI04G06650	CsaV3_4G006870	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G06650	Cla97C07G138110	Watermelon (97103) v2	cpiwmbB331
CSPI04G06650	Bhi01G002329	Wax gourd	cpiwgoB384
CSPI04G06650	Cucsa.114720	Cucumber (Gy14) v1	cgycpiB147
CSPI04G06650	CmaCh04G005810	Cucurbita maxima (Rimu)	cmacpiB714
CSPI04G06650	CmoCh04G006200	Cucurbita moschata (Rifu)	cmocpiB707
CSPI04G06650	CmoCh16G005740	Cucurbita moschata (Rifu)	cmocpiB332
CSPI04G06650	Cp4.1LG01g01330	Cucurbita pepo (Zucchini)	cpecpiB396

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G06650	Cucurbita pepo (Zucchini)	cpecpiB223
CSPI04G06650	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G06650	Silver-seed gourd	carcpiB0051
CSPI04G06650	Silver-seed gourd	carcpiB0687
CSPI04G06650	Wax gourd	cpiwgoB367
CSPI04G06650	Cucurbita maxima (Rimu)	cmacpiB342