Cucsa.114720 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.114720
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00968 : 83247 .. 84900 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTAGCCACTCTCATATATCATTCTCAAAAAATTATACCCTCCCATCCATGGCTGCCTTTATCAAGACCTTCATTTTCATCTTCCTCATCATCTTCATGTTCCCTAATTCAGGTATACTGTAGATTAGATATTCGAGTTCATTTACTAATTTTTCTATCATTTTGTTTTTTtGTTTGAAAACAAGTGTACATCACTTCATAAGAATTAGGGTTTTGTAAAAAAaTTGTTGTCCTAACTTtAATTTATATCTTTTTCAATTGAGATCATCTCACAAATTACTTTAGGGTTTAGATCTCTCTATCCGGGTCAGTGTTCAAAAATGGAAACTAGGGTTCCATAATTTTGCAATTTATTTTTTCTCCCTTTTTTTTtGTAGGGGACGCTCATGACCTGAGCTTGAAGAAGGGTTTGAAGCTTTCAAACCCTTGTGGACAGGTGAGAAAAACCCTAATCTGGATTCTTTTTCAAACATTCCAAGTGGAGATCAAACTATCAACATTTAAATTTGAACTTGATTCTATTATATATACTCAACAATTAAACTTCAAAATTTGAAACCTAATTGTCGTTTGAGGTGCATGTTCAACTTCTTTATGTTTTGGAAAATTCTTAAGCTTCTATTAACAACTTAGCTAGTTTTCGAGTTCAAATGTTCGCCCATATTTGTACTTAATTTAAAAAGTTCTTTACAAAATAACTAAGCTTAGGGTTTGAACGATCTAGAGAAGCACTTGGGTTTGGGTTTAGAAAATTGTGGATAAATtAAAAACTCTTTTCTTAAAAGAAAATTGAGAAGCAAATAAAATTTATTTTGATTTTAATTTATCAACGTtCGTGGATTTGCCTAACAAATTAACCCTAGATGAGCAACCATGAGTTCGGCTTTAAAACCTAACCTTTTCACTCCAAACACATTCTTAAAGCTATTGATTTGCATTTGAAATAAACCGTtAGACGTTTTTCTTTGAAAAAGATGCGTTGGATCAGGTgTACCCGAACATgTCCACTAGaTGGACACCCCTTAGAaTCTTCATCATTCCCACTttcATTAATATAGAAAGAACTAGTACAACAAGAGACAATACAAATATAAAAaTATTAATATCCACATCAAGATAACTCgAATTTAGCAATAAATCAAGAAACATATCATGCATCCATTTATATCAATGCATGAATGAACAAATTAAACCAGGTATAAAATCATTTATAATTGACCATACTCTTGAAATTACAGTTGATAGTTGAAAAGAACAACAAAGTGACAAGAAAGCTTTTGGGAGCAGAAGCATTTGCAGACTATGCAAGCCCAGATCATAACACAAGACATGAGCCAAGGTTTGGAAACCCCGGAGGTAGAGCTTAAGTGCCAATCCATAAGTGGTTGGTGAAATTAAGGGCTTCAGAAAAACTTCCAACTTAGAGTGATATATTATATGTATATATATGATGTGTTTTTGTGAAGAGAGAAAATATAATTTCAATTCATTATGGAGTGCGTAAGATATATGTTTGTTATAGAGAGTGAGTGTATGATATTCATTGTGAAAAAGAGTGATCTTTGGTATGTAATATATATAAAAATATGACGATGAATGTGAAAATATTgTGTGTGTTTAACTTTGGTTTTCAGGTATTAATAATTGTTGTATC

mRNA sequence

CCTAGCCACTCTCATATATCATTCTCAAAAAATTATACCCTCCCATCCATGGCTGCCTTTATCAAGACCTTCATTTTCATCTTCCTCATCATCTTCATGTTCCCTAATTCAGGGGACGCTCATGACCTGAGCTTGAAGAAGGGTTTGAAGCTTTCAAACCCTTGTGGACAGTTGATAGTTGAAAAGAACAACAAAGTGACAAGAAAGCTTTTGGGAGCAGAAGCATTTGCAGACTATGCAAGCCCAGATCATAACACAAGACATGAGCCAAGGTTTGGAAACCCCGGAGGTAGAGCTTAAGTGCCAATCCATAAGTGGTTGGTGAAATTAAGGGCTTCAGAAAAACTTCCAACTTAGAGTGATATATTATATGTATATATATGATGTGTTTTTGTGAAGAGAGAAAATATAATTTCAATTCATTATGGAGTGCGTAAGATATATGTTTGTTATAGAGAGTGAGTGTATGATATTCATTGTGAAAAAGAGTGATCTTTGGTATGTAATATATATAAAAATATGACGATGAATGTGAAAATATTGTGTGTGTTTAACTTTGGTTTTCAGGTATTAATAATTGTTGTATC

Coding sequence (CDS)

ATGGCTGCCTTTATCAAGACCTTCATTTTCATCTTCCTCATCATCTTCATGTTCCCTAATTCAGGGGACGCTCATGACCTGAGCTTGAAGAAGGGTTTGAAGCTTTCAAACCCTTGTGGACAGTTGATAGTTGAAAAGAACAACAAAGTGACAAGAAAGCTTTTGGGAGCAGAAGCATTTGCAGACTATGCAAGCCCAGATCATAACACAAGACATGAGCCAAGGTTTGGAAACCCCGGAGGTAGAGCTTAA

Protein sequence

MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAFADYASPDHNTRHEPRFGNPGGRA*
Homology
[Close]
BLAST of Cucsa.114720 vs. TrEMBL
Match: A0A0A0KYH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055320 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.6e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60
          MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF
Sbjct: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60

Query: 61 ADYASPDHNTRHEPRFGNPGGRA 84
          ADYASPDHNTRHEPRFGNPGGRA
Sbjct: 61 ADYASPDHNTRHEPRFGNPGGRA 83

[Close]
BLAST of Cucsa.114720 vs. NCBI nr
Match: gi|700198279|gb|KGN53437.1| (hypothetical protein Csa_4G055320 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 2.3e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60
          MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF
Sbjct: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60

Query: 61 ADYASPDHNTRHEPRFGNPGGRA 84
          ADYASPDHNTRHEPRFGNPGGRA
Sbjct: 61 ADYASPDHNTRHEPRFGNPGGRA 83

The following BLAST results are available for this feature:
BLAST of Cucsa.114720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYH7_CUCSA1.6e-40100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055320 PE=4 SV=1[more]
BLAST of Cucsa.114720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198279|gb|KGN53437.1|2.3e-40100.00hypothetical protein Csa_4G055320 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.114720.1Cucsa.114720.1mRNA