Cp4.1LG01g00530 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g00530
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG01 : 3563905 .. 3564300 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGACGACGACGTACGTTTACAGAGACGACCTGAACAAGAAGAAGCAGTCGCCGTCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGATGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAAGTAACGAAGCAAGAAGCGAATCGGATGCTATCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCCGCTCGAGTTAGGTCTTCTATGGTGGCCAATTGA

mRNA sequence

ATGATTAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGACGACGACGTACGTTTACAGAGACGACCTGAACAAGAAGAAGCAGTCGCCGTCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGATGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAAGTAACGAAGCAAGAAGCGAATCGGATGCTATCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCCGCTCGAGTTAGGTCTTCTATGGTGGCCAATTGA

Coding sequence (CDS)

ATGATTAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGACGACGACGTACGTTTACAGAGACGACCTGAACAAGAAGAAGCAGTCGCCGTCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGATGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAAGTAACGAAGCAAGAAGCGAATCGGATGCTATCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCCGCTCGAGTTAGGTCTTCTATGGTGGCCAATTGA

Protein sequence

MISNLISSLNKKLQAVEISNRCRRTKKTTTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIDAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARVRSSMVAN

Homology

[Close]

BLAST of Cp4.1LG01g00530 vs. TrEMBL
Match: A0A0A0KYE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.3e-40
Identity = 105/143 (73.43%), Postives = 114/143 (79.72%), Query Frame = 1


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTYVYRDDLNKKKQSPSS-----QQQPE-IKK 60
           MISNLISSLNKKLQAVEIS+RC+RTKKT  YVYRD+L KK  SP S     Q QPE IKK
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKKTA-YVYRDNLTKKNHSPPSSSSSPQHQPEEIKK 60

Query: 61  VKKRVRFAETEPVIIAIDAEEETEK------KRVVRITVKVTKQEANRMLSRCSEGGVLE 120
           VKKRVRFA+TEPVIIAI  + E E+      K+VVRITVK+TKQEANRMLSRCS GGVLE
Sbjct: 61  VKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLE 120

Query: 121 LGDAACELMRIPAARVRSSMVAN 132
            GD A ELMRIP  RVRSS+VAN
Sbjct: 121 FGDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of Cp4.1LG01g00530 vs. TrEMBL
Match: A0A0A0KZ22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G091930 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.8e-20
Identity = 67/111 (60.36%), Postives = 75/111 (67.57%), Query Frame = 1


Query: 27  KTTTYVYRDDLNKKKQSPSS------QQQPEIKKVKKRVRFAETEPVIIAIDAEEETEKK 86
           K  TYVYRDDL KK  SP S      +Q  EIKKVKKRVRF +TEP     + E+ETEK 
Sbjct: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEPE--EEELEDETEKN 61

Query: 87  RVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARVRSSMVAN 132
             VRI VK+ KQEAN+MLSRC  GGVLE GD   ELMRIP  RV SS+V +
Sbjct: 62  --VRIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108

[Close]

BLAST of Cp4.1LG01g00530 vs. TrEMBL
Match: A0A0R0IME2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G023200 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-11
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1


Query: 27  KTTTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIDAEEETEK------- 86
           + T  VYRD+L KK        QP  K VKK VRFAE+EP I+  D+E+E EK       
Sbjct: 78  EVTKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGN 137

Query: 87  ----KRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARV 125
               K  +R+ +K+TK+EA R+LS+C+ GG+L+  D A EL+ IP  RV
Sbjct: 138 EVGEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRV 178

[Close]

BLAST of Cp4.1LG01g00530 vs. TrEMBL
Match: K7L4J7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-11
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1


Query: 27  KTTTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIDAEEETEK------- 86
           + T  VYRD+L KK        QP  K VKK VRFAE+EP I+  D+E+E EK       
Sbjct: 24  EVTKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGN 83

Query: 87  ----KRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARV 125
               K  +R+ +K+TK+EA R+LS+C+ GG+L+  D A EL+ IP  RV
Sbjct: 84  EVGEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRV 124

[Close]

BLAST of Cp4.1LG01g00530 vs. TrEMBL
Match: A0A0B2QAC3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_002834 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-11
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1


Query: 27  KTTTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIDAEEETEK------- 86
           + T  VYRD+L KK        QP  K VKK VRFAE+EP I+  D+E+E EK       
Sbjct: 24  EVTKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGN 83

Query: 87  ----KRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARV 125
               K  +R+ +K+TK+EA R+LS+C+ GG+L+  D A EL+ IP  RV
Sbjct: 84  EVGEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRV 124

[Close]

BLAST of Cp4.1LG01g00530 vs. NCBI nr
Match: gi|659102097|ref|XP_008451951.1| (PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 7.2e-41
Identity = 110/142 (77.46%), Postives = 116/142 (81.69%), Query Frame = 1


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTYVYRDDLNKKKQSP-----SSQQQP-EIKK 60
           MISNLISSLNKKLQAVEISNRC+RTKK TTYVYRDDL KKK SP     S Q QP EIKK
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKK-TTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKK 60

Query: 61  VKKRVRFAETEPVIIAI-----DAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLEL 120
           VKKRVRFA+TEPVIIAI     + EEETEKK VVRITVK+TKQEANRMLSRCS  GVLE 
Sbjct: 61  VKKRVRFADTEPVIIAISTDREEEEEETEKK-VVRITVKLTKQEANRMLSRCSNDGVLEF 120

Query: 121 GDAACELMRIPAARVRSSMVAN 132
           GD A EL+RIP  RV SS+VAN
Sbjct: 121 GDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of Cp4.1LG01g00530 vs. NCBI nr
Match: gi|778691062|ref|XP_011653217.1| (PREDICTED: uncharacterized protein LOC105435188 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 1.0e-39
Identity = 105/143 (73.43%), Postives = 114/143 (79.72%), Query Frame = 1


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTYVYRDDLNKKKQSPSS-----QQQPE-IKK 60
           MISNLISSLNKKLQAVEIS+RC+RTKKT  YVYRD+L KK  SP S     Q QPE IKK
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKKTA-YVYRDNLTKKNHSPPSSSSSPQHQPEEIKK 60

Query: 61  VKKRVRFAETEPVIIAIDAEEETEK------KRVVRITVKVTKQEANRMLSRCSEGGVLE 120
           VKKRVRFA+TEPVIIAI  + E E+      K+VVRITVK+TKQEANRMLSRCS GGVLE
Sbjct: 61  VKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLE 120

Query: 121 LGDAACELMRIPAARVRSSMVAN 132
            GD A ELMRIP  RVRSS+VAN
Sbjct: 121 FGDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of Cp4.1LG01g00530 vs. NCBI nr
Match: gi|700198469|gb|KGN53627.1| (hypothetical protein Csa_4G091930 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 5.4e-20
Identity = 67/111 (60.36%), Postives = 75/111 (67.57%), Query Frame = 1


Query: 27  KTTTYVYRDDLNKKKQSPSS------QQQPEIKKVKKRVRFAETEPVIIAIDAEEETEKK 86
           K  TYVYRDDL KK  SP S      +Q  EIKKVKKRVRF +TEP     + E+ETEK 
Sbjct: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEPE--EEELEDETEKN 61

Query: 87  RVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARVRSSMVAN 132
             VRI VK+ KQEAN+MLSRC  GGVLE GD   ELMRIP  RV SS+V +
Sbjct: 62  --VRIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108

[Close]

BLAST of Cp4.1LG01g00530 vs. NCBI nr
Match: gi|947092735|gb|KRH41320.1| (hypothetical protein GLYMA_08G023200 [Glycine max])

HSP 1 Score: 76.3 bits (186), Expect = 4.6e-11
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1


Query: 27  KTTTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIDAEEETEK------- 86
           + T  VYRD+L KK        QP  K VKK VRFAE+EP I+  D+E+E EK       
Sbjct: 78  EVTKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGN 137

Query: 87  ----KRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARV 125
               K  +R+ +K+TK+EA R+LS+C+ GG+L+  D A EL+ IP  RV
Sbjct: 138 EVGEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRV 178

[Close]

BLAST of Cp4.1LG01g00530 vs. NCBI nr
Match: gi|734363676|gb|KHN16737.1| (hypothetical protein glysoja_002834 [Glycine soja])

HSP 1 Score: 76.3 bits (186), Expect = 4.6e-11
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1


Query: 27  KTTTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIDAEEETEK------- 86
           + T  VYRD+L KK        QP  K VKK VRFAE+EP I+  D+E+E EK       
Sbjct: 24  EVTKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGN 83

Query: 87  ----KRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARV 125
               K  +R+ +K+TK+EA R+LS+C+ GG+L+  D A EL+ IP  RV
Sbjct: 84  EVGEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRV 124

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g00530 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g00530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYE1_CUCSA	7.3e-40	73.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052080 PE=4 SV=1	[more]
A0A0A0KZ22_CUCSA	3.8e-20	60.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G091930 PE=4 SV=1	[more]
A0A0R0IME2_SOYBN	3.2e-11	44.95	Uncharacterized protein OS=Glycine max GN=GLYMA_08G023200 PE=4 SV=1	[more]
K7L4J7_SOYBN	3.2e-11	44.95	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2QAC3_GLYSO	3.2e-11	44.95	Uncharacterized protein OS=Glycine soja GN=glysoja_002834 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g00530 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g00530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102097\|ref\|XP_008451951.1\|	7.2e-41	77.46	PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo]	[more]
gi\|778691062\|ref\|XP_011653217.1\|	1.0e-39	73.43	PREDICTED: uncharacterized protein LOC105435188 [Cucumis sativus]	[more]
gi\|700198469\|gb\|KGN53627.1\|	5.4e-20	60.36	hypothetical protein Csa_4G091930 [Cucumis sativus]	[more]
gi\|947092735\|gb\|KRH41320.1\|	4.6e-11	44.95	hypothetical protein GLYMA_08G023200 [Glycine max]	[more]
gi\|734363676\|gb\|KHN16737.1\|	4.6e-11	44.95	hypothetical protein glysoja_002834 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g00530.1	Cp4.1LG01g00530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36782	FAMILY NOT NAMED	coord: 2..125 score: 1.7
None	No IPR available	PANTHER	PTHR36782:SF1	SUBFAMILY NOT NAMED	coord: 2..125 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g00530	CmaCh16G005430	Cucurbita maxima (Rimu)	cmacpeB350
Cp4.1LG01g00530	CmaCh04G006870	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g00530	CmoCh16G005950	Cucurbita moschata (Rifu)	cmocpeB313
Cp4.1LG01g00530	CmoCh04G007320	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g00530	Cla012804	Watermelon (97103) v1	cpewmB422
Cp4.1LG01g00530	Csa4G052080	Cucumber (Chinese Long) v2	cpecuB406
Cp4.1LG01g00530	MELO3C016295	Melon (DHL92) v3.5.1	cpemeB427
Cp4.1LG01g00530	ClCG07G011610	Watermelon (Charleston Gray)	cpewcgB408
Cp4.1LG01g00530	CSPI04G06390	Wild cucumber (PI 183967)	cpecpiB405
Cp4.1LG01g00530	Lsi07G007200	Bottle gourd (USVL1VR-Ls)	cpelsiB378
Cp4.1LG01g00530	MELO3C016295.2	Melon (DHL92) v3.6.1	cpemedB499
Cp4.1LG01g00530	CsaV3_4G006600	Cucumber (Chinese Long) v3	cpecucB0503
Cp4.1LG01g00530	Bhi01G002300	Wax gourd	cpewgoB0518
Cp4.1LG01g00530	CsGy4G006310	Cucumber (Gy14) v2	cgybcpeB508
Cp4.1LG01g00530	Carg22251	Silver-seed gourd	carcpeB0839
Cp4.1LG01g00530	Carg13071	Silver-seed gourd	carcpeB0061

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g00530	Cp4.1LG14g02510	Cucurbita pepo (Zucchini)	cpecpeB233

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g00530	Cucurbita pepo (Zucchini)	cpecpeB206
Cp4.1LG01g00530	Cucurbita maxima (Rimu)	cmacpeB324
Cp4.1LG01g00530	Cucurbita moschata (Rifu)	cmocpeB287
Cp4.1LG01g00530	Wild cucumber (PI 183967)	cpecpiB431
Cp4.1LG01g00530	Cucumber (Chinese Long) v2	cpecuB432
Cp4.1LG01g00530	Melon (DHL92) v3.5.1	cpemeB362
Cp4.1LG01g00530	Melon (DHL92) v3.5.1	cpemeB415
Cp4.1LG01g00530	Melon (DHL92) v3.6.1	cpemedB486
Cp4.1LG01g00530	Cucumber (Chinese Long) v3	cpecucB0538