Cp4.1LG01g00530.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g00530.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 3563905 .. 3564300 (+)
Sequence length396
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGACGACGACGTACGTTTACAGAGACGACCTGAACAAGAAGAAGCAGTCGCCGTCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGATGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAAGTAACGAAGCAAGAAGCGAATCGGATGCTATCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCCGCTCGAGTTAGGTCTTCTATGGTGGCCAATTGA

mRNA sequence

ATGATTAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGACGACGACGTACGTTTACAGAGACGACCTGAACAAGAAGAAGCAGTCGCCGTCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGATGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAAGTAACGAAGCAAGAAGCGAATCGGATGCTATCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCCGCTCGAGTTAGGTCTTCTATGGTGGCCAATTGA

Coding sequence (CDS)

ATGATTAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGACGACGACGTACGTTTACAGAGACGACCTGAACAAGAAGAAGCAGTCGCCGTCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGATGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAAGTAACGAAGCAAGAAGCGAATCGGATGCTATCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCCGCTCGAGTTAGGTCTTCTATGGTGGCCAATTGA

Protein sequence

MISNLISSLNKKLQAVEISNRCRRTKKTTTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIDAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARVRSSMVAN
Homology
[Close]
BLAST of Cp4.1LG01g00530.1 vs. TrEMBL
Match: A0A0A0KYE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.3e-40
Identity = 105/143 (73.43%), Postives = 114/143 (79.72%), Query Frame = 1 

Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTYVYRDDLNKKKQSPSS-----QQQPE-IKK 60
           MISNLISSLNKKLQAVEIS+RC+RTKKT  YVYRD+L KK  SP S     Q QPE IKK
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKKTA-YVYRDNLTKKNHSPPSSSSSPQHQPEEIKK 60

Query: 61  VKKRVRFAETEPVIIAIDAEEETEK------KRVVRITVKVTKQEANRMLSRCSEGGVLE 120
           VKKRVRFA+TEPVIIAI  + E E+      K+VVRITVK+TKQEANRMLSRCS GGVLE
Sbjct: 61  VKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLE 120

Query: 121 LGDAACELMRIPAARVRSSMVAN 132
            GD A ELMRIP  RVRSS+VAN
Sbjct: 121 FGDVASELMRIPPTRVRSSLVAN 142

[Close]
BLAST of Cp4.1LG01g00530.1 vs. TrEMBL
Match: A0A0A0KZ22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G091930 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.8e-20
Identity = 67/111 (60.36%), Postives = 75/111 (67.57%), Query Frame = 1 

Query: 27  KTTTYVYRDDLNKKKQSPSS------QQQPEIKKVKKRVRFAETEPVIIAIDAEEETEKK 86
           K  TYVYRDDL KK  SP S      +Q  EIKKVKKRVRF +TEP     + E+ETEK 
Sbjct: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEPE--EEELEDETEKN 61

Query: 87  RVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARVRSSMVAN 132
             VRI VK+ KQEAN+MLSRC  GGVLE GD   ELMRIP  RV SS+V +
Sbjct: 62  --VRIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108

[Close]
BLAST of Cp4.1LG01g00530.1 vs. TrEMBL
Match: A0A0R0IME2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G023200 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-11
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1 

Query: 27  KTTTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIDAEEETEK------- 86
           + T  VYRD+L KK        QP  K VKK VRFAE+EP I+  D+E+E EK       
Sbjct: 78  EVTKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGN 137

Query: 87  ----KRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARV 125
               K  +R+ +K+TK+EA R+LS+C+ GG+L+  D A EL+ IP  RV
Sbjct: 138 EVGEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRV 178

[Close]
BLAST of Cp4.1LG01g00530.1 vs. TrEMBL
Match: K7L4J7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-11
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1 

Query: 27  KTTTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIDAEEETEK------- 86
           + T  VYRD+L KK        QP  K VKK VRFAE+EP I+  D+E+E EK       
Sbjct: 24  EVTKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGN 83

Query: 87  ----KRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARV 125
               K  +R+ +K+TK+EA R+LS+C+ GG+L+  D A EL+ IP  RV
Sbjct: 84  EVGEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRV 124

[Close]
BLAST of Cp4.1LG01g00530.1 vs. TrEMBL
Match: A0A0B2QAC3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_002834 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-11
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1 

Query: 27  KTTTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIDAEEETEK------- 86
           + T  VYRD+L KK        QP  K VKK VRFAE+EP I+  D+E+E EK       
Sbjct: 24  EVTKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGN 83

Query: 87  ----KRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARV 125
               K  +R+ +K+TK+EA R+LS+C+ GG+L+  D A EL+ IP  RV
Sbjct: 84  EVGEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRV 124

[Close]
BLAST of Cp4.1LG01g00530.1 vs. NCBI nr
Match: gi|659102097|ref|XP_008451951.1| (PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 7.2e-41
Identity = 110/142 (77.46%), Postives = 116/142 (81.69%), Query Frame = 1 

Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTYVYRDDLNKKKQSP-----SSQQQP-EIKK 60
           MISNLISSLNKKLQAVEISNRC+RTKK TTYVYRDDL KKK SP     S Q QP EIKK
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKK-TTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKK 60

Query: 61  VKKRVRFAETEPVIIAI-----DAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLEL 120
           VKKRVRFA+TEPVIIAI     + EEETEKK VVRITVK+TKQEANRMLSRCS  GVLE 
Sbjct: 61  VKKRVRFADTEPVIIAISTDREEEEEETEKK-VVRITVKLTKQEANRMLSRCSNDGVLEF 120

Query: 121 GDAACELMRIPAARVRSSMVAN 132
           GD A EL+RIP  RV SS+VAN
Sbjct: 121 GDVASELLRIPPTRVSSSLVAN 140

[Close]
BLAST of Cp4.1LG01g00530.1 vs. NCBI nr
Match: gi|778691062|ref|XP_011653217.1| (PREDICTED: uncharacterized protein LOC105435188 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 1.0e-39
Identity = 105/143 (73.43%), Postives = 114/143 (79.72%), Query Frame = 1 

Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTYVYRDDLNKKKQSPSS-----QQQPE-IKK 60
           MISNLISSLNKKLQAVEIS+RC+RTKKT  YVYRD+L KK  SP S     Q QPE IKK
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKKTA-YVYRDNLTKKNHSPPSSSSSPQHQPEEIKK 60

Query: 61  VKKRVRFAETEPVIIAIDAEEETEK------KRVVRITVKVTKQEANRMLSRCSEGGVLE 120
           VKKRVRFA+TEPVIIAI  + E E+      K+VVRITVK+TKQEANRMLSRCS GGVLE
Sbjct: 61  VKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLE 120

Query: 121 LGDAACELMRIPAARVRSSMVAN 132
            GD A ELMRIP  RVRSS+VAN
Sbjct: 121 FGDVASELMRIPPTRVRSSLVAN 142

[Close]
BLAST of Cp4.1LG01g00530.1 vs. NCBI nr
Match: gi|700198469|gb|KGN53627.1| (hypothetical protein Csa_4G091930 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 5.4e-20
Identity = 67/111 (60.36%), Postives = 75/111 (67.57%), Query Frame = 1 

Query: 27  KTTTYVYRDDLNKKKQSPSS------QQQPEIKKVKKRVRFAETEPVIIAIDAEEETEKK 86
           K  TYVYRDDL KK  SP S      +Q  EIKKVKKRVRF +TEP     + E+ETEK 
Sbjct: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEPE--EEELEDETEKN 61

Query: 87  RVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARVRSSMVAN 132
             VRI VK+ KQEAN+MLSRC  GGVLE GD   ELMRIP  RV SS+V +
Sbjct: 62  --VRIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108

[Close]
BLAST of Cp4.1LG01g00530.1 vs. NCBI nr
Match: gi|947092735|gb|KRH41320.1| (hypothetical protein GLYMA_08G023200 [Glycine max])

HSP 1 Score: 76.3 bits (186), Expect = 4.6e-11
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1 

Query: 27  KTTTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIDAEEETEK------- 86
           + T  VYRD+L KK        QP  K VKK VRFAE+EP I+  D+E+E EK       
Sbjct: 78  EVTKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGN 137

Query: 87  ----KRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARV 125
               K  +R+ +K+TK+EA R+LS+C+ GG+L+  D A EL+ IP  RV
Sbjct: 138 EVGEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRV 178

[Close]
BLAST of Cp4.1LG01g00530.1 vs. NCBI nr
Match: gi|734363676|gb|KHN16737.1| (hypothetical protein glysoja_002834 [Glycine soja])

HSP 1 Score: 76.3 bits (186), Expect = 4.6e-11
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1 

Query: 27  KTTTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIDAEEETEK------- 86
           + T  VYRD+L KK        QP  K VKK VRFAE+EP I+  D+E+E EK       
Sbjct: 24  EVTKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGN 83

Query: 87  ----KRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARV 125
               K  +R+ +K+TK+EA R+LS+C+ GG+L+  D A EL+ IP  RV
Sbjct: 84  EVGEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRV 124

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g00530.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g00530.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYE1_CUCSA7.3e-4073.43Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052080 PE=4 SV=1[more]
A0A0A0KZ22_CUCSA3.8e-2060.36Uncharacterized protein OS=Cucumis sativus GN=Csa_4G091930 PE=4 SV=1[more]
A0A0R0IME2_SOYBN3.2e-1144.95Uncharacterized protein OS=Glycine max GN=GLYMA_08G023200 PE=4 SV=1[more]
K7L4J7_SOYBN3.2e-1144.95Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2QAC3_GLYSO3.2e-1144.95Uncharacterized protein OS=Glycine soja GN=glysoja_002834 PE=4 SV=1[more]
BLAST of Cp4.1LG01g00530.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g00530.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102097|ref|XP_008451951.1|7.2e-4177.46PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo][more]
gi|778691062|ref|XP_011653217.1|1.0e-3973.43PREDICTED: uncharacterized protein LOC105435188 [Cucumis sativus][more]
gi|700198469|gb|KGN53627.1|5.4e-2060.36hypothetical protein Csa_4G091930 [Cucumis sativus][more]
gi|947092735|gb|KRH41320.1|4.6e-1144.95hypothetical protein GLYMA_08G023200 [Glycine max][more]
gi|734363676|gb|KHN16737.1|4.6e-1144.95hypothetical protein glysoja_002834 [Glycine soja][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG01g00530Cp4.1LG01g00530gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG01g00530.1:cds:001Cp4.1LG01g00530.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG01g00530.1Cp4.1LG01g00530.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36782FAMILY NOT NAMEDcoord: 2..125
score: 1.7
NoneNo IPR availablePANTHERPTHR36782:SF1SUBFAMILY NOT NAMEDcoord: 2..125
score: 1.7