Carg13071 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13071
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Nipped-B-like protein
Location	Cucurbita_argyrosperma_scaffold_101 : 139030 .. 139434 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGACGACGACGACGACGACGTACGTTTACAGAGACGATCTGAACAAGAAGAAGCAGTCGCCGTCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGATGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAAGTAACGAAGCAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCGGCTCGAGTTAGGTCTTCTATGGTGGCCAATTGA

mRNA sequence

ATGATTAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGACGACGACGACGACGACGTACGTTTACAGAGACGATCTGAACAAGAAGAAGCAGTCGCCGTCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGATGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAAGTAACGAAGCAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCGGCTCGAGTTAGGTCTTCTATGGTGGCCAATTGA

Coding sequence (CDS)

ATGATTAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGACGACGACGACGACGACGTACGTTTACAGAGACGATCTGAACAAGAAGAAGCAGTCGCCGTCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGATGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAAGTAACGAAGCAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCGGCTCGAGTTAGGTCTTCTATGGTGGCCAATTGA

Protein sequence

MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIDAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARVRSSMVAN

Homology

[Close]

BLAST of Carg13071 vs. NCBI nr
Match: XP_022931429.1 (uncharacterized protein LOC111437608 [Cucurbita moschata])

HSP 1 Score: 137.1 bits (344), Expect = 4.3e-29
Identity = 88/136 (64.71%), Postives = 92/136 (67.65%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKVKK 60
           MI NLISSLNKKLQAVEISNRCR                                +KVKK
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCR---RTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKK 60

Query: 61  RVRFAETEPVIIAID-----AEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGDA 120
           RVRFA+TEPVIIAID      EEETEKK VVRITVK+TKQEANRMLSRCS+GGVLE GD 
Sbjct: 61  RVRFADTEPVIIAIDREERSTEEETEKK-VVRITVKLTKQEANRMLSRCSDGGVLEFGDV 120

Query: 121 ACELMRIPAARVRSSM 132
           A ELMRIPAARV SSM
Sbjct: 121 ASELMRIPAARVSSSM 132

[Close]

BLAST of Carg13071 vs. NCBI nr
Match: XP_022985430.1 (uncharacterized protein LOC111483436 [Cucurbita maxima])

HSP 1 Score: 137.1 bits (344), Expect = 4.3e-29
Identity = 88/136 (64.71%), Postives = 92/136 (67.65%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKVKK 60
           MI NLISSLNKKLQAVEISNRCR                                +KVKK
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCR-RTKKTTNVYRRDMSKKKQPQSPSPSQGKPEIEKVKK 60

Query: 61  RVRFAETEPVIIAID-----AEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGDA 120
           RVRFA+TEPVIIAID      EEETEKK VVRITVK+TKQEANRMLSRCS+GGVLE GD 
Sbjct: 61  RVRFADTEPVIIAIDREERSTEEETEKK-VVRITVKLTKQEANRMLSRCSDGGVLEFGDV 120

Query: 121 ACELMRIPAARVRSSM 132
           A ELMRIPAARV SSM
Sbjct: 121 ASELMRIPAARVSSSM 134

[Close]

BLAST of Carg13071 vs. NCBI nr
Match: XP_023522331.1 (uncharacterized protein LOC111786247 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136.3 bits (342), Expect = 7.4e-29
Identity = 88/136 (64.71%), Postives = 91/136 (66.91%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKVKK 60
           MI NLISSLNKKLQAVEISNRCR                                +KVKK
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCR---RTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKK 60

Query: 61  RVRFAETEPVIIAID-----AEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGDA 120
           RVRFA+TEPVIIAID      EEETEKK VVRITVK+TKQEANRMLSRCS GGVLE GD 
Sbjct: 61  RVRFADTEPVIIAIDREERSTEEETEKK-VVRITVKLTKQEANRMLSRCSNGGVLEFGDV 120

Query: 121 ACELMRIPAARVRSSM 132
           A ELMRIPAARV SSM
Sbjct: 121 ASELMRIPAARVSSSM 132

[Close]

BLAST of Carg13071 vs. NCBI nr
Match: XP_023552096.1 (uncharacterized protein LOC111809864 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135.2 bits (339), Expect = 1.7e-28
Identity = 87/136 (63.97%), Postives = 91/136 (66.91%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKVKK 60
           MI NLISSLNKKLQAV+ISNRCR                                +KVKK
Sbjct: 1   MIGNLISSLNKKLQAVDISNRCR---RTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKK 60

Query: 61  RVRFAETEPVIIAID-----AEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGDA 120
           RVRFA+TEPVIIAID      EEETEKK VVRITVK+TKQEANRMLSRCS GGVLE GD 
Sbjct: 61  RVRFADTEPVIIAIDREERSTEEETEKK-VVRITVKLTKQEANRMLSRCSNGGVLEFGDV 120

Query: 121 ACELMRIPAARVRSSM 132
           A ELMRIPAARV SSM
Sbjct: 121 ASELMRIPAARVSSSM 132

[Close]

BLAST of Carg13071 vs. NCBI nr
Match: XP_011653217.1 (PREDICTED: uncharacterized protein LOC105435188 [Cucumis sativus] >KGN53407.1 hypothetical protein Csa_4G052080 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-24
Identity = 83/142 (58.45%), Postives = 89/142 (62.68%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCR--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKV 60
           MISNLISSLNKKLQAVEIS+RC+                       XXX        KKV
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSXXXPQHQPEEIKKV 60

Query: 61  KKRVRFAETEPVIIA------IDAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLEL 120
           KKRVRFA+TEPVIIA                +VVRITVK+TKQEANRMLSRCS GGVLE 
Sbjct: 61  KKRVRFADTEPVIIAXXXXXXXXXXXXXXXXKVVRITVKLTKQEANRMLSRCSNGGVLEF 120

Query: 121 GDAACELMRIPAARVRSSMVAN 135
           GD A ELMRIP  RVRSS+VAN
Sbjct: 121 GDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of Carg13071 vs. TAIR10
Match: AT4G23880.1 (unknown protein)

HSP 1 Score: 41.2 bits (95), Expect = 5.9e-04
Identity = 19/51 (37.25%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 82  KKRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARVRSSMV 133
           K+ VVR+ +K+TK EA R+LS+C    VL+L     ++  +P  +++ +MV
Sbjct: 130 KEEVVRVKIKMTKHEAQRLLSKCKNDSVLKLEHLMDQIAHVPVHQLQVAMV 180

[Close]

BLAST of Carg13071 vs. TrEMBL
Match: tr|A0A0A0KYE1|A0A0A0KYE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.3e-25
Identity = 83/142 (58.45%), Postives = 89/142 (62.68%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCR--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKV 60
           MISNLISSLNKKLQAVEIS+RC+                       XXX        KKV
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSXXXPQHQPEEIKKV 60

Query: 61  KKRVRFAETEPVIIA------IDAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLEL 120
           KKRVRFA+TEPVIIA                +VVRITVK+TKQEANRMLSRCS GGVLE 
Sbjct: 61  KKRVRFADTEPVIIAXXXXXXXXXXXXXXXXKVVRITVKLTKQEANRMLSRCSNGGVLEF 120

Query: 121 GDAACELMRIPAARVRSSMVAN 135
           GD A ELMRIP  RVRSS+VAN
Sbjct: 121 GDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of Carg13071 vs. TrEMBL
Match: tr|A0A1S3BS40|A0A1S3BS40_CUCME (uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.8e-23
Identity = 78/140 (55.71%), Postives = 83/140 (59.29%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCR--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKV 60
           MISNLISSLNKKLQAVEISNRC+                                  KKV
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKV 60

Query: 61  KKRVRFAETEPVIIAI----DAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGD 120
           KKRVRFA+TEPVIIAI               VRITVK+TKQEANRMLSRCS  GVLE GD
Sbjct: 61  KKRVRFADTEPVIIAIXXXXXXXXXXXXXXXVRITVKLTKQEANRMLSRCSNDGVLEFGD 120

Query: 121 AACELMRIPAARVRSSMVAN 135
            A EL+RIP  RV SS+VAN
Sbjct: 121 VASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of Carg13071 vs. TrEMBL
Match: tr|A0A0R0IME2|A0A0R0IME2_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_08G023200 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 56  KKVKKRVRFAETEPVIIAIDAEEETEK-----------KRVVRITVKVTKQEANRMLSRC 115
           K VKK VRFAE+EP I+  D+E+E EK           K  +R+ +K+TK+EA R+LS+C
Sbjct: 96  KTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGNEVGEKEGMRVRIKLTKEEAARLLSKC 155

Query: 116 SEGGVLELGDAACELMRIPAARV 128
           + GG+L+  D A EL+ IP  RV
Sbjct: 156 NNGGILQFKDVAHELVLIPVNRV 178

[Close]

BLAST of Carg13071 vs. TrEMBL
Match: tr|K7KRX3|K7KRX3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=102662341 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.8e-08
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 56  KKVKKRVRFAETEPVIIAIDAEE-------ETEKKRVVRITVKVTKQEANRMLSRCSEGG 115
           K VKK VRFAE+EP I+  D+E+       E   K  +R+ +K+TK+EA R+LS+C+ GG
Sbjct: 42  KAVKKTVRFAESEPTILGEDSEKTRCVSGNEVGGKEGIRVRIKLTKEEAARLLSKCNNGG 101

Query: 116 VLELGDAACELMRIPAARV 128
           +LE  D A EL+ IP  RV
Sbjct: 102 ILEFEDVARELVLIPVNRV 120

[Close]

BLAST of Carg13071 vs. TrEMBL
Match: tr|A0A1S3VQI5|A0A1S3VQI5_VIGRR (uncharacterized protein LOC106777384 OS=Vigna radiata var. radiata OX=3916 GN=LOC106777384 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-07
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 56  KKVKKRVRFAETEPVIIAIDAEE--------ETEKKRVVRITVKVTKQEANRMLSRCSEG 115
           KK KK VRFA++E  I   + +E        E+  K  +R+ VK+TK+EA R+LS+C EG
Sbjct: 36  KKAKKSVRFADSEASIFGEEKKEEKGRYSDNESRGKETIRVKVKMTKEEAARLLSKCKEG 95

Query: 116 GVLELGDAACELMRIPAARVR 129
           GVLE  D A +L+ +P  RVR
Sbjct: 96  GVLEYKDVAHQLLALPVNRVR 116

The following BLAST results are available for this feature:

BLAST of Carg13071 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931429.1	4.3e-29	64.71	uncharacterized protein LOC111437608 [Cucurbita moschata]	[more]
XP_022985430.1	4.3e-29	64.71	uncharacterized protein LOC111483436 [Cucurbita maxima]	[more]
XP_023522331.1	7.4e-29	64.71	uncharacterized protein LOC111786247 [Cucurbita pepo subsp. pepo]	[more]
XP_023552096.1	1.7e-28	63.97	uncharacterized protein LOC111809864 [Cucurbita pepo subsp. pepo]	[more]
XP_011653217.1	1.1e-24	58.45	PREDICTED: uncharacterized protein LOC105435188 [Cucumis sativus] >KGN53407.1 hy...	[more]

BLAST of Carg13071 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23880.1	5.9e-04	37.25	unknown protein	[more]

BLAST of Carg13071 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg13071 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KYE1\|A0A0A0KYE1_CUCSA	7.3e-25	58.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1	[more]
tr\|A0A1S3BS40\|A0A1S3BS40_CUCME	1.8e-23	55.71	uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=...	[more]
tr\|A0A0R0IME2\|A0A0R0IME2_SOYBN	1.3e-08	46.99	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_08G023200 PE=4 SV=1	[more]
tr\|K7KRX3\|K7KRX3_SOYBN	2.8e-08	48.10	Uncharacterized protein OS=Glycine max OX=3847 GN=102662341 PE=4 SV=1	[more]
tr\|A0A1S3VQI5\|A0A1S3VQI5_VIGRR	1.8e-07	45.68	uncharacterized protein LOC106777384 OS=Vigna radiata var. radiata OX=3916 GN=LO...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13071-RA	Carg13071-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..59
None	No IPR available	PANTHER	PTHR36782	FAMILY NOT NAMED	coord: 1..132

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13071	Cla012804	Watermelon (97103) v1	carwmB0043
Carg13071	Csa4G052080	Cucumber (Chinese Long) v2	carcuB0044
Carg13071	MELO3C016295	Melon (DHL92) v3.5.1	carmeB0043
Carg13071	ClCG07G011610	Watermelon (Charleston Gray)	carwcgB0049
Carg13071	CSPI04G06390	Wild cucumber (PI 183967)	carcpiB0048
Carg13071	CmaCh16G005430	Cucurbita maxima (Rimu)	carcmaB0054
Carg13071	CmaCh04G006870	Cucurbita maxima (Rimu)	carcmaB0055
Carg13071	CmoCh16G005950	Cucurbita moschata (Rifu)	carcmoB0056
Carg13071	CmoCh04G007320	Cucurbita moschata (Rifu)	carcmoB0058
Carg13071	Lsi07G007200	Bottle gourd (USVL1VR-Ls)	carlsiB040
Carg13071	Cp4.1LG01g00530	Cucurbita pepo (Zucchini)	carcpeB0061
Carg13071	Cp4.1LG14g02510	Cucurbita pepo (Zucchini)	carcpeB0058
Carg13071	CsGy4G006310	Cucumber (Gy14) v2	carcgybB0044
Carg13071	MELO3C016295.2	Melon (DHL92) v3.6.1	carmedB0044
Carg13071	CsaV3_4G006600	Cucumber (Chinese Long) v3	carcucB0049
Carg13071	Cla97C07G138350	Watermelon (97103) v2	carwmbB0045
Carg13071	Bhi01G002300	Wax gourd	carwgoB0049

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg13071	Carg22251	Silver-seed gourd	carcarB049

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13071	Cucumber (Gy14) v1	carcgyB0056
Carg13071	Cucurbita maxima (Rimu)	carcmaB0051
Carg13071	Cucurbita moschata (Rifu)	carcmoB0053
Carg13071	Cucurbita pepo (Zucchini)	carcpeB0056
Carg13071	Wild cucumber (PI 183967)	carcpiB0052
Carg13071	Cucumber (Chinese Long) v2	carcuB0048
Carg13071	Cucumber (Chinese Long) v3	carcucB0053
Carg13071	Bottle gourd (USVL1VR-Ls)	carlsiB038
Carg13071	Melon (DHL92) v3.5.1	carmeB0040
Carg13071	Melon (DHL92) v3.5.1	carmeB0045
Carg13071	Melon (DHL92) v3.6.1	carmedB0041
Carg13071	Melon (DHL92) v3.6.1	carmedB0046
Carg13071	Watermelon (Charleston Gray)	carwcgB0044
Carg13071	Watermelon (97103) v1	carwmB0049
Carg13071	Watermelon (97103) v2	carwmbB0041
Carg13071	Wax gourd	carwgoB0048
Carg13071	Silver-seed gourd	carcarB048
Carg13071	Cucumber (Gy14) v2	carcgybB0048