CmoCh04G007320 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G007320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 3641490 .. 3641894 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGACGACGACGACGACGACGTACGTTTACAGAGACGATCTGAACAAGAAGAAGCAGTCGCCGTCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGGTGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAAGTAACGAAGCAAGAAGCGAATCGGATGCTATCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCGGCTCGAGTTAGGTCTTCTATGGTGGCCAATTGA

mRNA sequence

ATGATCAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGACGACGACGACGACGACGTACGTTTACAGAGACGATCTGAACAAGAAGAAGCAGTCGCCGTCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGGTGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAAGTAACGAAGCAAGAAGCGAATCGGATGCTATCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCGGCTCGAGTTAGGTCTTCTATGGTGGCCAATTGA

Coding sequence (CDS)

ATGATCAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGACGACGACGACGACGACGTACGTTTACAGAGACGATCTGAACAAGAAGAAGCAGTCGCCGTCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGGTGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAAGTAACGAAGCAAGAAGCGAATCGGATGCTATCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCGGCTCGAGTTAGGTCTTCTATGGTGGCCAATTGA

Homology

[Close]

BLAST of CmoCh04G007320 vs. TrEMBL
Match: A0A0A0KYE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-39
Identity = 105/146 (71.92%), Postives = 114/146 (78.08%), Query Frame = 1


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSPSS-----QQQPE- 60
           MISNLISSLNKKLQAVEIS+RC+RTKKT     YVYRD+L KK  SP S     Q QPE 
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKKTA----YVYRDNLTKKNHSPPSSSSSPQHQPEE 60

Query: 61  IKKVKKRVRFAETEPVIIAIGAEEETEK------KRVVRITVKVTKQEANRMLSRCSEGG 120
           IKKVKKRVRFA+TEPVIIAI  + E E+      K+VVRITVK+TKQEANRMLSRCS GG
Sbjct: 61  IKKVKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGG 120

Query: 121 VLELGDAACELMRIPAARVRSSMVAN 135
           VLE GD A ELMRIP  RVRSS+VAN
Sbjct: 121 VLEFGDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of CmoCh04G007320 vs. TrEMBL
Match: A0A0A0KZ22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G091930 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 66/108 (61.11%), Postives = 74/108 (68.52%), Query Frame = 1


Query: 33  TYVYRDDLNKKKQSPSS------QQQPEIKKVKKRVRFAETEPVIIAIGAEEETEKKRVV 92
           TYVYRDDL KK  SP S      +Q  EIKKVKKRVRF +TEP    +  E+ETEK   V
Sbjct: 5   TYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEPEEEEL--EDETEKN--V 64

Query: 93  RITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARVRSSMVAN 135
           RI VK+ KQEAN+MLSRC  GGVLE GD   ELMRIP  RV SS+V +
Sbjct: 65  RIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108

[Close]

BLAST of CmoCh04G007320 vs. TrEMBL
Match: K7L4J7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 1


Query: 32  TTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIGAEEETEK--------- 91
           T  VYRD+L KK        QP  K VKK VRFAE+EP I+   +E+E EK         
Sbjct: 26  TKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGNEV 85

Query: 92  --KRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARV 128
             K  +R+ +K+TK+EA R+LS+C+ GG+L+  D A EL+ IP  RV
Sbjct: 86  GEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRV 124

[Close]

BLAST of CmoCh04G007320 vs. TrEMBL
Match: A0A0B2QAC3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_002834 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 1


Query: 32  TTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIGAEEETEK--------- 91
           T  VYRD+L KK        QP  K VKK VRFAE+EP I+   +E+E EK         
Sbjct: 26  TKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGNEV 85

Query: 92  --KRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARV 128
             K  +R+ +K+TK+EA R+LS+C+ GG+L+  D A EL+ IP  RV
Sbjct: 86  GEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRV 124

[Close]

BLAST of CmoCh04G007320 vs. TrEMBL
Match: A0A0R0IME2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G023200 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 1


Query: 32  TTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIGAEEETEK--------- 91
           T  VYRD+L KK        QP  K VKK VRFAE+EP I+   +E+E EK         
Sbjct: 80  TKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGNEV 139

Query: 92  --KRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARV 128
             K  +R+ +K+TK+EA R+LS+C+ GG+L+  D A EL+ IP  RV
Sbjct: 140 GEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRV 178

[Close]

BLAST of CmoCh04G007320 vs. NCBI nr
Match: gi|659102097|ref|XP_008451951.1| (PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo])

HSP 1 Score: 174.1 bits (440), Expect = 1.6e-40
Identity = 110/145 (75.86%), Postives = 115/145 (79.31%), Query Frame = 1


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSP-----SSQQQP-E 60
           MISNLISSLNKKLQAVEISNRC+RTKKTT    YVYRDDL KKK SP     S Q QP E
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKKTT----YVYRDDLTKKKHSPPLSSSSPQHQPAE 60

Query: 61  IKKVKKRVRFAETEPVIIAIGA-----EEETEKKRVVRITVKVTKQEANRMLSRCSEGGV 120
           IKKVKKRVRFA+TEPVIIAI       EEETEKK VVRITVK+TKQEANRMLSRCS  GV
Sbjct: 61  IKKVKKRVRFADTEPVIIAISTDREEEEEETEKK-VVRITVKLTKQEANRMLSRCSNDGV 120

Query: 121 LELGDAACELMRIPAARVRSSMVAN 135
           LE GD A EL+RIP  RV SS+VAN
Sbjct: 121 LEFGDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of CmoCh04G007320 vs. NCBI nr
Match: gi|778691062|ref|XP_011653217.1| (PREDICTED: uncharacterized protein LOC105435188 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.8e-39
Identity = 105/146 (71.92%), Postives = 114/146 (78.08%), Query Frame = 1


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSPSS-----QQQPE- 60
           MISNLISSLNKKLQAVEIS+RC+RTKKT     YVYRD+L KK  SP S     Q QPE 
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKKTA----YVYRDNLTKKNHSPPSSSSSPQHQPEE 60

Query: 61  IKKVKKRVRFAETEPVIIAIGAEEETEK------KRVVRITVKVTKQEANRMLSRCSEGG 120
           IKKVKKRVRFA+TEPVIIAI  + E E+      K+VVRITVK+TKQEANRMLSRCS GG
Sbjct: 61  IKKVKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGG 120

Query: 121 VLELGDAACELMRIPAARVRSSMVAN 135
           VLE GD A ELMRIP  RVRSS+VAN
Sbjct: 121 VLEFGDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of CmoCh04G007320 vs. NCBI nr
Match: gi|700198469|gb|KGN53627.1| (hypothetical protein Csa_4G091930 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-19
Identity = 66/108 (61.11%), Postives = 74/108 (68.52%), Query Frame = 1


Query: 33  TYVYRDDLNKKKQSPSS------QQQPEIKKVKKRVRFAETEPVIIAIGAEEETEKKRVV 92
           TYVYRDDL KK  SP S      +Q  EIKKVKKRVRF +TEP    +  E+ETEK   V
Sbjct: 5   TYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEPEEEEL--EDETEKN--V 64

Query: 93  RITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARVRSSMVAN 135
           RI VK+ KQEAN+MLSRC  GGVLE GD   ELMRIP  RV SS+V +
Sbjct: 65  RIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108

[Close]

BLAST of CmoCh04G007320 vs. NCBI nr
Match: gi|947092735|gb|KRH41320.1| (hypothetical protein GLYMA_08G023200 [Glycine max])

HSP 1 Score: 73.9 bits (180), Expect = 2.3e-10
Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 1


Query: 32  TTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIGAEEETEK--------- 91
           T  VYRD+L KK        QP  K VKK VRFAE+EP I+   +E+E EK         
Sbjct: 80  TKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGNEV 139

Query: 92  --KRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARV 128
             K  +R+ +K+TK+EA R+LS+C+ GG+L+  D A EL+ IP  RV
Sbjct: 140 GEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRV 178

[Close]

BLAST of CmoCh04G007320 vs. NCBI nr
Match: gi|734363676|gb|KHN16737.1| (hypothetical protein glysoja_002834 [Glycine soja])

HSP 1 Score: 73.9 bits (180), Expect = 2.3e-10
Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 1


Query: 32  TTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIGAEEETEK--------- 91
           T  VYRD+L KK        QP  K VKK VRFAE+EP I+   +E+E EK         
Sbjct: 26  TKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGNEV 85

Query: 92  --KRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARV 128
             K  +R+ +K+TK+EA R+LS+C+ GG+L+  D A EL+ IP  RV
Sbjct: 86  GEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRV 124

The following BLAST results are available for this feature:

BLAST of CmoCh04G007320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G007320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYE1_CUCSA	1.3e-39	71.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052080 PE=4 SV=1	[more]
A0A0A0KZ22_CUCSA	1.1e-19	61.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G091930 PE=4 SV=1	[more]
K7L4J7_SOYBN	1.6e-10	44.86	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2QAC3_GLYSO	1.6e-10	44.86	Uncharacterized protein OS=Glycine soja GN=glysoja_002834 PE=4 SV=1	[more]
A0A0R0IME2_SOYBN	1.6e-10	44.86	Uncharacterized protein OS=Glycine max GN=GLYMA_08G023200 PE=4 SV=1	[more]

BLAST of CmoCh04G007320 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G007320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102097\|ref\|XP_008451951.1\|	1.6e-40	75.86	PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo]	[more]
gi\|778691062\|ref\|XP_011653217.1\|	1.8e-39	71.92	PREDICTED: uncharacterized protein LOC105435188 [Cucumis sativus]	[more]
gi\|700198469\|gb\|KGN53627.1\|	1.6e-19	61.11	hypothetical protein Csa_4G091930 [Cucumis sativus]	[more]
gi\|947092735\|gb\|KRH41320.1\|	2.3e-10	44.86	hypothetical protein GLYMA_08G023200 [Glycine max]	[more]
gi\|734363676\|gb\|KHN16737.1\|	2.3e-10	44.86	hypothetical protein glysoja_002834 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G007320.1	CmoCh04G007320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36782	FAMILY NOT NAMED	coord: 2..128 score: 1.0
None	No IPR available	PANTHER	PTHR36782:SF1	SUBFAMILY NOT NAMED	coord: 2..128 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G007320	CmaCh16G005430	Cucurbita maxima (Rimu)	cmacmoB337
CmoCh04G007320	CmaCh04G006870	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G007320	Cla012804	Watermelon (97103) v1	cmowmB688
CmoCh04G007320	Csa4G052080	Cucumber (Chinese Long) v2	cmocuB705
CmoCh04G007320	MELO3C016295	Melon (DHL92) v3.5.1	cmomeB695
CmoCh04G007320	ClCG07G011610	Watermelon (Charleston Gray)	cmowcgB672
CmoCh04G007320	CSPI04G06390	Wild cucumber (PI 183967)	cmocpiB715
CmoCh04G007320	Lsi07G007200	Bottle gourd (USVL1VR-Ls)	cmolsiB693
CmoCh04G007320	Cp4.1LG14g02510	Cucurbita pepo (Zucchini)	cmocpeB667
CmoCh04G007320	Cp4.1LG01g00530	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G007320	MELO3C016295.2	Melon (DHL92) v3.6.1	cmomedB789
CmoCh04G007320	CsaV3_4G006600	Cucumber (Chinese Long) v3	cmocucB0833
CmoCh04G007320	Cla97C07G138350	Watermelon (97103) v2	cmowmbB750
CmoCh04G007320	Bhi01G002300	Wax gourd	cmowgoB0850
CmoCh04G007320	CsGy4G006310	Cucumber (Gy14) v2	cgybcmoB521
CmoCh04G007320	Carg22251	Silver-seed gourd	carcmoB0804
CmoCh04G007320	Carg13071	Silver-seed gourd	carcmoB0058

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G007320	CmoCh16G005950	Cucurbita moschata (Rifu)	cmocmoB285

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G007320	Cucurbita pepo (Zucchini)	cmocpeB661
CmoCh04G007320	Bottle gourd (USVL1VR-Ls)	cmolsiB611
CmoCh04G007320	Melon (DHL92) v3.6.1	cmomedB779
CmoCh04G007320	Cucumber (Gy14) v2	cgybcmoB639
CmoCh04G007320	Melon (DHL92) v3.6.1	cmomedB717
CmoCh04G007320	Silver-seed gourd	carcmoB0492
CmoCh04G007320	Cucumber (Chinese Long) v3	cmocucB0860
CmoCh04G007320	Watermelon (97103) v2	cmowmbB677
CmoCh04G007320	Wax gourd	cmowgoB0825
CmoCh04G007320	Cucurbita moschata (Rifu)	cmocmoB264
CmoCh04G007320	Cucumber (Gy14) v1	cgycmoB0833
CmoCh04G007320	Cucurbita maxima (Rimu)	cmacmoB311
CmoCh04G007320	Wild cucumber (PI 183967)	cmocpiB734
CmoCh04G007320	Cucumber (Chinese Long) v2	cmocuB728
CmoCh04G007320	Melon (DHL92) v3.5.1	cmomeB628
CmoCh04G007320	Melon (DHL92) v3.5.1	cmomeB686
CmoCh04G007320	Watermelon (Charleston Gray)	cmowcgB637
CmoCh04G007320	Watermelon (97103) v1	cmowmB709