CmaCh04G006870 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G006870
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr04 : 3490401 .. 3490796 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGAAGACGACGTACGTTTACAGAGACGATCTGAACAAGAAGAAGCAGTCGCCATCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGATGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAATTAACGAAGAAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCGGCTCGAGTTAGGTCTTCTACGGTGGCCAATTGA

mRNA sequence

ATGATCAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGAAGACGACGTACGTTTACAGAGACGATCTGAACAAGAAGAAGCAGTCGCCATCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGATGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAATTAACGAAGAAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCGGCTCGAGTTAGGTCTTCTACGGTGGCCAATTGA

Coding sequence (CDS)

ATGATCAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGAAGACGACGTACGTTTACAGAGACGATCTGAACAAGAAGAAGCAGTCGCCATCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGATGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAATTAACGAAGAAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCGGCTCGAGTTAGGTCTTCTACGGTGGCCAATTGA

Protein sequence

MISNLISSLNKKLQAVEISNRCRRTKKKTTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIDAEEETEKKRVVRITVKLTKKEANRMLSRCSEGGVLELGDAACELMRIPAARVRSSTVAN

Homology

[Close]

BLAST of CmaCh04G006870 vs. TrEMBL
Match: A0A0A0KYE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-39
Identity = 105/143 (73.43%), Postives = 113/143 (79.02%), Query Frame = 1


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKKTTYVYRDDLNKKKQSPSS-----QQQPE-IKK 60
           MISNLISSLNKKLQAVEIS+RC+RTKK T YVYRD+L KK  SP S     Q QPE IKK
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKK-TAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKK 60

Query: 61  VKKRVRFAETEPVIIAIDAEEETEK------KRVVRITVKLTKKEANRMLSRCSEGGVLE 120
           VKKRVRFA+TEPVIIAI  + E E+      K+VVRITVKLTK+EANRMLSRCS GGVLE
Sbjct: 61  VKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLE 120

Query: 121 LGDAACELMRIPAARVRSSTVAN 132
            GD A ELMRIP  RVRSS VAN
Sbjct: 121 FGDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of CmaCh04G006870 vs. TrEMBL
Match: A0A0A0KZ22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G091930 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.9e-20
Identity = 68/111 (61.26%), Postives = 75/111 (67.57%), Query Frame = 1


Query: 27  KKTTYVYRDDLNKKKQSPSS------QQQPEIKKVKKRVRFAETEPVIIAIDAEEETEKK 86
           KK TYVYRDDL KK  SP S      +Q  EIKKVKKRVRF +TEP     + E+ETEK 
Sbjct: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEPE--EEELEDETEKN 61

Query: 87  RVVRITVKLTKKEANRMLSRCSEGGVLELGDAACELMRIPAARVRSSTVAN 132
             VRI VKL K+EAN+MLSRC  GGVLE GD   ELMRIP  RV SS V +
Sbjct: 62  --VRIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108

[Close]

BLAST of CmaCh04G006870 vs. TrEMBL
Match: A0A0R0IME2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G023200 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 50/107 (46.73%), Postives = 65/107 (60.75%), Query Frame = 1


Query: 29  TTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIDAEEETEK--------- 88
           T  VYRD+L KK        QP  K VKK VRFAE+EP I+  D+E+E EK         
Sbjct: 80  TKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGNEV 139

Query: 89  --KRVVRITVKLTKKEANRMLSRCSEGGVLELGDAACELMRIPAARV 125
             K  +R+ +KLTK+EA R+LS+C+ GG+L+  D A EL+ IP  RV
Sbjct: 140 GEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRV 178

[Close]

BLAST of CmaCh04G006870 vs. TrEMBL
Match: K7L4J7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 50/107 (46.73%), Postives = 65/107 (60.75%), Query Frame = 1


Query: 29  TTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIDAEEETEK--------- 88
           T  VYRD+L KK        QP  K VKK VRFAE+EP I+  D+E+E EK         
Sbjct: 26  TKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGNEV 85

Query: 89  --KRVVRITVKLTKKEANRMLSRCSEGGVLELGDAACELMRIPAARV 125
             K  +R+ +KLTK+EA R+LS+C+ GG+L+  D A EL+ IP  RV
Sbjct: 86  GEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRV 124

[Close]

BLAST of CmaCh04G006870 vs. TrEMBL
Match: A0A0B2QAC3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_002834 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 50/107 (46.73%), Postives = 65/107 (60.75%), Query Frame = 1


Query: 29  TTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIDAEEETEK--------- 88
           T  VYRD+L KK        QP  K VKK VRFAE+EP I+  D+E+E EK         
Sbjct: 26  TKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGNEV 85

Query: 89  --KRVVRITVKLTKKEANRMLSRCSEGGVLELGDAACELMRIPAARV 125
             K  +R+ +KLTK+EA R+LS+C+ GG+L+  D A EL+ IP  RV
Sbjct: 86  GEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRV 124

[Close]

BLAST of CmaCh04G006870 vs. NCBI nr
Match: gi|659102097|ref|XP_008451951.1| (PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 2.1e-40
Identity = 110/142 (77.46%), Postives = 115/142 (80.99%), Query Frame = 1


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKKTTYVYRDDLNKKKQSP-----SSQQQP-EIKK 60
           MISNLISSLNKKLQAVEISNRC+RT KKTTYVYRDDL KKK SP     S Q QP EIKK
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRT-KKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKK 60

Query: 61  VKKRVRFAETEPVIIAI-----DAEEETEKKRVVRITVKLTKKEANRMLSRCSEGGVLEL 120
           VKKRVRFA+TEPVIIAI     + EEETEKK VVRITVKLTK+EANRMLSRCS  GVLE 
Sbjct: 61  VKKRVRFADTEPVIIAISTDREEEEEETEKK-VVRITVKLTKQEANRMLSRCSNDGVLEF 120

Query: 121 GDAACELMRIPAARVRSSTVAN 132
           GD A EL+RIP  RV SS VAN
Sbjct: 121 GDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of CmaCh04G006870 vs. NCBI nr
Match: gi|778691062|ref|XP_011653217.1| (PREDICTED: uncharacterized protein LOC105435188 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 4.0e-39
Identity = 105/143 (73.43%), Postives = 113/143 (79.02%), Query Frame = 1


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKKTTYVYRDDLNKKKQSPSS-----QQQPE-IKK 60
           MISNLISSLNKKLQAVEIS+RC+RTKK T YVYRD+L KK  SP S     Q QPE IKK
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKK-TAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKK 60

Query: 61  VKKRVRFAETEPVIIAIDAEEETEK------KRVVRITVKLTKKEANRMLSRCSEGGVLE 120
           VKKRVRFA+TEPVIIAI  + E E+      K+VVRITVKLTK+EANRMLSRCS GGVLE
Sbjct: 61  VKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLE 120

Query: 121 LGDAACELMRIPAARVRSSTVAN 132
            GD A ELMRIP  RVRSS VAN
Sbjct: 121 FGDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of CmaCh04G006870 vs. NCBI nr
Match: gi|700198469|gb|KGN53627.1| (hypothetical protein Csa_4G091930 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-20
Identity = 68/111 (61.26%), Postives = 75/111 (67.57%), Query Frame = 1


Query: 27  KKTTYVYRDDLNKKKQSPSS------QQQPEIKKVKKRVRFAETEPVIIAIDAEEETEKK 86
           KK TYVYRDDL KK  SP S      +Q  EIKKVKKRVRF +TEP     + E+ETEK 
Sbjct: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEPE--EEELEDETEKN 61

Query: 87  RVVRITVKLTKKEANRMLSRCSEGGVLELGDAACELMRIPAARVRSSTVAN 132
             VRI VKL K+EAN+MLSRC  GGVLE GD   ELMRIP  RV SS V +
Sbjct: 62  --VRIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108

[Close]

BLAST of CmaCh04G006870 vs. NCBI nr
Match: gi|947092735|gb|KRH41320.1| (hypothetical protein GLYMA_08G023200 [Glycine max])

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-11
Identity = 50/107 (46.73%), Postives = 65/107 (60.75%), Query Frame = 1


Query: 29  TTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIDAEEETEK--------- 88
           T  VYRD+L KK        QP  K VKK VRFAE+EP I+  D+E+E EK         
Sbjct: 80  TKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGNEV 139

Query: 89  --KRVVRITVKLTKKEANRMLSRCSEGGVLELGDAACELMRIPAARV 125
             K  +R+ +KLTK+EA R+LS+C+ GG+L+  D A EL+ IP  RV
Sbjct: 140 GEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRV 178

[Close]

BLAST of CmaCh04G006870 vs. NCBI nr
Match: gi|734363676|gb|KHN16737.1| (hypothetical protein glysoja_002834 [Glycine soja])

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-11
Identity = 50/107 (46.73%), Postives = 65/107 (60.75%), Query Frame = 1


Query: 29  TTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIDAEEETEK--------- 88
           T  VYRD+L KK        QP  K VKK VRFAE+EP I+  D+E+E EK         
Sbjct: 26  TKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILGEDSEKEFEKTRWGSGNEV 85

Query: 89  --KRVVRITVKLTKKEANRMLSRCSEGGVLELGDAACELMRIPAARV 125
             K  +R+ +KLTK+EA R+LS+C+ GG+L+  D A EL+ IP  RV
Sbjct: 86  GEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRV 124

The following BLAST results are available for this feature:

BLAST of CmaCh04G006870 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G006870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYE1_CUCSA	2.8e-39	73.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052080 PE=4 SV=1	[more]
A0A0A0KZ22_CUCSA	2.9e-20	61.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G091930 PE=4 SV=1	[more]
A0A0R0IME2_SOYBN	1.9e-11	46.73	Uncharacterized protein OS=Glycine max GN=GLYMA_08G023200 PE=4 SV=1	[more]
K7L4J7_SOYBN	1.9e-11	46.73	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2QAC3_GLYSO	1.9e-11	46.73	Uncharacterized protein OS=Glycine soja GN=glysoja_002834 PE=4 SV=1	[more]

BLAST of CmaCh04G006870 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G006870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102097\|ref\|XP_008451951.1\|	2.1e-40	77.46	PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo]	[more]
gi\|778691062\|ref\|XP_011653217.1\|	4.0e-39	73.43	PREDICTED: uncharacterized protein LOC105435188 [Cucumis sativus]	[more]
gi\|700198469\|gb\|KGN53627.1\|	4.1e-20	61.26	hypothetical protein Csa_4G091930 [Cucumis sativus]	[more]
gi\|947092735\|gb\|KRH41320.1\|	2.7e-11	46.73	hypothetical protein GLYMA_08G023200 [Glycine max]	[more]
gi\|734363676\|gb\|KHN16737.1\|	2.7e-11	46.73	hypothetical protein glysoja_002834 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G006870.1	CmaCh04G006870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36782	FAMILY NOT NAMED	coord: 2..125 score: 1.8
None	No IPR available	PANTHER	PTHR36782:SF1	SUBFAMILY NOT NAMED	coord: 2..125 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G006870	Cla012804	Watermelon (97103) v1	cmawmB694
CmaCh04G006870	Csa4G052080	Cucumber (Chinese Long) v2	cmacuB713
CmaCh04G006870	MELO3C016295	Melon (DHL92) v3.5.1	cmameB703
CmaCh04G006870	ClCG07G011610	Watermelon (Charleston Gray)	cmawcgB671
CmaCh04G006870	CSPI04G06390	Wild cucumber (PI 183967)	cmacpiB721
CmaCh04G006870	CmoCh16G005950	Cucurbita moschata (Rifu)	cmacmoB700
CmaCh04G006870	CmoCh04G007320	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G006870	Lsi07G007200	Bottle gourd (USVL1VR-Ls)	cmalsiB699
CmaCh04G006870	Cp4.1LG14g02510	Cucurbita pepo (Zucchini)	cmacpeB714
CmaCh04G006870	Cp4.1LG01g00530	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G006870	MELO3C016295.2	Melon (DHL92) v3.6.1	cmamedB792
CmaCh04G006870	CsaV3_4G006600	Cucumber (Chinese Long) v3	cmacucB0847
CmaCh04G006870	Cla97C07G138350	Watermelon (97103) v2	cmawmbB776
CmaCh04G006870	Bhi01G002300	Wax gourd	cmawgoB0853
CmaCh04G006870	CsGy4G006310	Cucumber (Gy14) v2	cgybcmaB547
CmaCh04G006870	Carg22251	Silver-seed gourd	carcmaB0826
CmaCh04G006870	Carg13071	Silver-seed gourd	carcmaB0055

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G006870	CmaCh16G005430	Cucurbita maxima (Rimu)	cmacmaB350

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G006870	Cucumber (Chinese Long) v3	cmacucB0872
CmaCh04G006870	Watermelon (97103) v2	cmawmbB706
CmaCh04G006870	Wax gourd	cmawgoB0829
CmaCh04G006870	Cucurbita maxima (Rimu)	cmacmaB328
CmaCh04G006870	Cucumber (Gy14) v1	cgycmaB0838
CmaCh04G006870	Cucurbita moschata (Rifu)	cmacmoB697
CmaCh04G006870	Wild cucumber (PI 183967)	cmacpiB741
CmaCh04G006870	Cucumber (Chinese Long) v2	cmacuB734
CmaCh04G006870	Melon (DHL92) v3.5.1	cmameB638
CmaCh04G006870	Melon (DHL92) v3.5.1	cmameB694
CmaCh04G006870	Watermelon (Charleston Gray)	cmawcgB635
CmaCh04G006870	Watermelon (97103) v1	cmawmB712
CmaCh04G006870	Bottle gourd (USVL1VR-Ls)	cmalsiB624
CmaCh04G006870	Cucumber (Gy14) v2	cgybcmaB661
CmaCh04G006870	Melon (DHL92) v3.6.1	cmamedB724
CmaCh04G006870	Melon (DHL92) v3.6.1	cmamedB782
CmaCh04G006870	Silver-seed gourd	carcmaB0509