CmaCh16G005430 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G005430
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr16 : 2791622 .. 2792035 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGGCAATTTGATTTCAAGCTTGAACAAAAAGTTGCAGGCGGTTGAGATCAGTAATCGCTGCAGACGAACGAAGAAGACGACTAACGTATACAGACGTGATATGAGCAAGAAGAAGCAGCCGCAGTCGCCATCGCCGTCGCAGGGGAAGCCGGAGATCGAGAAAGTGAAGAAGAGAGTGAGATTTGCAGATACGGAACCGGTGATAATCGCCATTGACAGAGAGGAGCGGAGTACAGAGGAGGAAACAGAGAAGAAAGTGGTTAGAATTACGGTGAAATTAACGAAGCAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTAGAATTCGGAGATGTTGCGAGTGAGCTCATGCGGATTCCTGCGGCTCGCGTTAGCTCTTCTATGGTGGTCAATTGA

mRNA sequence

ATGATCGGCAATTTGATTTCAAGCTTGAACAAAAAGTTGCAGGCGGTTGAGATCAGTAATCGCTGCAGACGAACGAAGAAGACGACTAACGTATACAGACGTGATATGAGCAAGAAGAAGCAGCCGCAGTCGCCATCGCCGTCGCAGGGGAAGCCGGAGATCGAGAAAGTGAAGAAGAGAGTGAGATTTGCAGATACGGAACCGGTGATAATCGCCATTGACAGAGAGGAGCGGAGTACAGAGGAGGAAACAGAGAAGAAAGTGGTTAGAATTACGGTGAAATTAACGAAGCAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTAGAATTCGGAGATGTTGCGAGTGAGCTCATGCGGATTCCTGCGGCTCGCGTTAGCTCTTCTATGGTGGTCAATTGA

Coding sequence (CDS)

ATGATCGGCAATTTGATTTCAAGCTTGAACAAAAAGTTGCAGGCGGTTGAGATCAGTAATCGCTGCAGACGAACGAAGAAGACGACTAACGTATACAGACGTGATATGAGCAAGAAGAAGCAGCCGCAGTCGCCATCGCCGTCGCAGGGGAAGCCGGAGATCGAGAAAGTGAAGAAGAGAGTGAGATTTGCAGATACGGAACCGGTGATAATCGCCATTGACAGAGAGGAGCGGAGTACAGAGGAGGAAACAGAGAAGAAAGTGGTTAGAATTACGGTGAAATTAACGAAGCAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTAGAATTCGGAGATGTTGCGAGTGAGCTCATGCGGATTCCTGCGGCTCGCGTTAGCTCTTCTATGGTGGTCAATTGA

Protein sequence

MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRRDMSKKKQPQSPSPSQGKPEIEKVKKRVRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASELMRIPAARVSSSMVVN

Homology

[Close]

BLAST of CmaCh16G005430 vs. TrEMBL
Match: A0A0A0KYE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 7.4e-43
Identity = 109/142 (76.76%), Postives = 118/142 (83.10%), Query Frame = 1


Query: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRRDMSKKKQ--PQSPSPSQGKPE-IEKV 60
           MI NLISSLNKKLQAVEIS+RC+RTKKT  VYR +++KK    P S S  Q +PE I+KV
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60

Query: 61  KKRVRFADTEPVIIAI--DREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEF 120
           KKRVRFADTEPVIIAI  DREE   E ETEKKVVRITVKLTKQEANRMLSRCS+GGVLEF
Sbjct: 61  KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120

Query: 121 GDVASELMRIPAARVSSSMVVN 138
           GDVASELMRIP  RV SS+V N
Sbjct: 121 GDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of CmaCh16G005430 vs. TrEMBL
Match: A0A0A0KZ22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G091930 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.6e-21
Identity = 70/115 (60.87%), Postives = 79/115 (68.70%), Query Frame = 1


Query: 26  KKTTNVYRRDMSKKKQP---QSPSPSQGKPEIEKVKKRVRFADTEPVIIAIDREERSTEE 85
           KK T VYR D++KK       S SP +   EI+KVKKRVRF DTEP       EE   E+
Sbjct: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEP-------EEEELED 61

Query: 86  ETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASELMRIPAARVSSSMVVN 138
           ETEK V RI VKL KQEAN+MLSRC +GGVLEFGDV  ELMRIP  RVSSS+V +
Sbjct: 62  ETEKNV-RIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108

[Close]

BLAST of CmaCh16G005430 vs. TrEMBL
Match: K7L4J7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.4e-11
Identity = 48/111 (43.24%), Postives = 70/111 (63.06%), Query Frame = 1


Query: 28  TTNVYRRDMSKKKQPQSPSPSQGKPEIEKVKKRVRFADTEPVIIAIDREER-------ST 87
           T  VYR +++KK+ P+           + VKK VRFA++EP I+  D E+        S 
Sbjct: 26  TKPVYRDELTKKQPPR-----------KTVKKTVRFAESEPTILGEDSEKEFEKTRWGSG 85

Query: 88  EEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASELMRIPAARVS 132
            E  EK+ +R+ +KLTK+EA R+LS+C++GG+L+F DVA EL+ IP  RVS
Sbjct: 86  NEVGEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRVS 125

[Close]

BLAST of CmaCh16G005430 vs. TrEMBL
Match: A0A0R0IME2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G023200 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.4e-11
Identity = 48/111 (43.24%), Postives = 70/111 (63.06%), Query Frame = 1


Query: 28  TTNVYRRDMSKKKQPQSPSPSQGKPEIEKVKKRVRFADTEPVIIAIDREER-------ST 87
           T  VYR +++KK+ P+           + VKK VRFA++EP I+  D E+        S 
Sbjct: 80  TKPVYRDELTKKQPPR-----------KTVKKTVRFAESEPTILGEDSEKEFEKTRWGSG 139

Query: 88  EEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASELMRIPAARVS 132
            E  EK+ +R+ +KLTK+EA R+LS+C++GG+L+F DVA EL+ IP  RVS
Sbjct: 140 NEVGEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRVS 179

[Close]

BLAST of CmaCh16G005430 vs. TrEMBL
Match: A0A0B2QAC3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_002834 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.4e-11
Identity = 48/111 (43.24%), Postives = 70/111 (63.06%), Query Frame = 1


Query: 28  TTNVYRRDMSKKKQPQSPSPSQGKPEIEKVKKRVRFADTEPVIIAIDREER-------ST 87
           T  VYR +++KK+ P+           + VKK VRFA++EP I+  D E+        S 
Sbjct: 26  TKPVYRDELTKKQPPR-----------KTVKKTVRFAESEPTILGEDSEKEFEKTRWGSG 85

Query: 88  EEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASELMRIPAARVS 132
            E  EK+ +R+ +KLTK+EA R+LS+C++GG+L+F DVA EL+ IP  RVS
Sbjct: 86  NEVGEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRVS 125

[Close]

BLAST of CmaCh16G005430 vs. NCBI nr
Match: gi|659102097|ref|XP_008451951.1| (PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 3.3e-44
Identity = 109/140 (77.86%), Postives = 118/140 (84.29%), Query Frame = 1


Query: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRRDMSKKKQ--PQSPSPSQGKP-EIEKV 60
           MI NLISSLNKKLQAVEISNRC+RTKKTT VYR D++KKK   P S S  Q +P EI+KV
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKV 60

Query: 61  KKRVRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGD 120
           KKRVRFADTEPVIIAI  +    EEETEKKVVRITVKLTKQEANRMLSRCS+ GVLEFGD
Sbjct: 61  KKRVRFADTEPVIIAISTDREEEEEETEKKVVRITVKLTKQEANRMLSRCSNDGVLEFGD 120

Query: 121 VASELMRIPAARVSSSMVVN 138
           VASEL+RIP  RVSSS+V N
Sbjct: 121 VASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of CmaCh16G005430 vs. NCBI nr
Match: gi|778691062|ref|XP_011653217.1| (PREDICTED: uncharacterized protein LOC105435188 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42
Identity = 109/142 (76.76%), Postives = 118/142 (83.10%), Query Frame = 1


Query: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRRDMSKKKQ--PQSPSPSQGKPE-IEKV 60
           MI NLISSLNKKLQAVEIS+RC+RTKKT  VYR +++KK    P S S  Q +PE I+KV
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60

Query: 61  KKRVRFADTEPVIIAI--DREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEF 120
           KKRVRFADTEPVIIAI  DREE   E ETEKKVVRITVKLTKQEANRMLSRCS+GGVLEF
Sbjct: 61  KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120

Query: 121 GDVASELMRIPAARVSSSMVVN 138
           GDVASELMRIP  RV SS+V N
Sbjct: 121 GDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of CmaCh16G005430 vs. NCBI nr
Match: gi|700198469|gb|KGN53627.1| (hypothetical protein Csa_4G091930 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 5.1e-21
Identity = 70/115 (60.87%), Postives = 79/115 (68.70%), Query Frame = 1


Query: 26  KKTTNVYRRDMSKKKQP---QSPSPSQGKPEIEKVKKRVRFADTEPVIIAIDREERSTEE 85
           KK T VYR D++KK       S SP +   EI+KVKKRVRF DTEP       EE   E+
Sbjct: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEP-------EEEELED 61

Query: 86  ETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASELMRIPAARVSSSMVVN 138
           ETEK V RI VKL KQEAN+MLSRC +GGVLEFGDV  ELMRIP  RVSSS+V +
Sbjct: 62  ETEKNV-RIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108

[Close]

BLAST of CmaCh16G005430 vs. NCBI nr
Match: gi|947092735|gb|KRH41320.1| (hypothetical protein GLYMA_08G023200 [Glycine max])

HSP 1 Score: 75.9 bits (185), Expect = 6.2e-11
Identity = 48/111 (43.24%), Postives = 70/111 (63.06%), Query Frame = 1


Query: 28  TTNVYRRDMSKKKQPQSPSPSQGKPEIEKVKKRVRFADTEPVIIAIDREER-------ST 87
           T  VYR +++KK+ P+           + VKK VRFA++EP I+  D E+        S 
Sbjct: 80  TKPVYRDELTKKQPPR-----------KTVKKTVRFAESEPTILGEDSEKEFEKTRWGSG 139

Query: 88  EEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASELMRIPAARVS 132
            E  EK+ +R+ +KLTK+EA R+LS+C++GG+L+F DVA EL+ IP  RVS
Sbjct: 140 NEVGEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRVS 179

[Close]

BLAST of CmaCh16G005430 vs. NCBI nr
Match: gi|734363676|gb|KHN16737.1| (hypothetical protein glysoja_002834 [Glycine soja])

HSP 1 Score: 75.9 bits (185), Expect = 6.2e-11
Identity = 48/111 (43.24%), Postives = 70/111 (63.06%), Query Frame = 1


Query: 28  TTNVYRRDMSKKKQPQSPSPSQGKPEIEKVKKRVRFADTEPVIIAIDREER-------ST 87
           T  VYR +++KK+ P+           + VKK VRFA++EP I+  D E+        S 
Sbjct: 26  TKPVYRDELTKKQPPR-----------KTVKKTVRFAESEPTILGEDSEKEFEKTRWGSG 85

Query: 88  EEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASELMRIPAARVS 132
            E  EK+ +R+ +KLTK+EA R+LS+C++GG+L+F DVA EL+ IP  RVS
Sbjct: 86  NEVGEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRVS 125

The following BLAST results are available for this feature:

BLAST of CmaCh16G005430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh16G005430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYE1_CUCSA	7.4e-43	76.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052080 PE=4 SV=1	[more]
A0A0A0KZ22_CUCSA	3.6e-21	60.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G091930 PE=4 SV=1	[more]
K7L4J7_SOYBN	4.4e-11	43.24	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0R0IME2_SOYBN	4.4e-11	43.24	Uncharacterized protein OS=Glycine max GN=GLYMA_08G023200 PE=4 SV=1	[more]
A0A0B2QAC3_GLYSO	4.4e-11	43.24	Uncharacterized protein OS=Glycine soja GN=glysoja_002834 PE=4 SV=1	[more]

BLAST of CmaCh16G005430 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh16G005430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102097\|ref\|XP_008451951.1\|	3.3e-44	77.86	PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo]	[more]
gi\|778691062\|ref\|XP_011653217.1\|	1.1e-42	76.76	PREDICTED: uncharacterized protein LOC105435188 [Cucumis sativus]	[more]
gi\|700198469\|gb\|KGN53627.1\|	5.1e-21	60.87	hypothetical protein Csa_4G091930 [Cucumis sativus]	[more]
gi\|947092735\|gb\|KRH41320.1\|	6.2e-11	43.24	hypothetical protein GLYMA_08G023200 [Glycine max]	[more]
gi\|734363676\|gb\|KHN16737.1\|	6.2e-11	43.24	hypothetical protein glysoja_002834 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G005430.1	CmaCh16G005430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36782	FAMILY NOT NAMED	coord: 2..131 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G005430	Cla012804	Watermelon (97103) v1	cmawmB314
CmaCh16G005430	Csa4G052080	Cucumber (Chinese Long) v2	cmacuB337
CmaCh16G005430	MELO3C016295	Melon (DHL92) v3.5.1	cmameB307
CmaCh16G005430	ClCG07G011610	Watermelon (Charleston Gray)	cmawcgB300
CmaCh16G005430	CSPI04G06390	Wild cucumber (PI 183967)	cmacpiB342
CmaCh16G005430	CmoCh16G005950	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G005430	CmoCh04G007320	Cucurbita moschata (Rifu)	cmacmoB337
CmaCh16G005430	Lsi07G007200	Bottle gourd (USVL1VR-Ls)	cmalsiB325
CmaCh16G005430	Cp4.1LG14g02510	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G005430	Cp4.1LG01g00530	Cucurbita pepo (Zucchini)	cmacpeB350
CmaCh16G005430	MELO3C016295.2	Melon (DHL92) v3.6.1	cmamedB358
CmaCh16G005430	CsaV3_4G006600	Cucumber (Chinese Long) v3	cmacucB0393
CmaCh16G005430	Cla97C07G138350	Watermelon (97103) v2	cmawmbB350
CmaCh16G005430	Bhi01G002300	Wax gourd	cmawgoB0437
CmaCh16G005430	CsGy4G006310	Cucumber (Gy14) v2	cgybcmaB498
CmaCh16G005430	Carg22251	Silver-seed gourd	carcmaB0825
CmaCh16G005430	Carg13071	Silver-seed gourd	carcmaB0054

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh16G005430	CmaCh04G006870	Cucurbita maxima (Rimu)	cmacmaB350

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G005430	Melon (DHL92) v3.6.1	cmamedB328
CmaCh16G005430	Melon (DHL92) v3.6.1	cmamedB341
CmaCh16G005430	Melon (DHL92) v3.6.1	cmamedB350
CmaCh16G005430	Silver-seed gourd	carcmaB0506
CmaCh16G005430	Cucumber (Chinese Long) v3	cmacucB0379
CmaCh16G005430	Cucumber (Chinese Long) v3	cmacucB0404
CmaCh16G005430	Cucumber (Chinese Long) v3	cmacucB0407
CmaCh16G005430	Watermelon (97103) v2	cmawmbB326
CmaCh16G005430	Watermelon (97103) v2	cmawmbB345
CmaCh16G005430	Wax gourd	cmawgoB0427
CmaCh16G005430	Cucurbita maxima (Rimu)	cmacmaB302
CmaCh16G005430	Cucumber (Gy14) v1	cgycmaB0831
CmaCh16G005430	Cucurbita moschata (Rifu)	cmacmoB320
CmaCh16G005430	Wild cucumber (PI 183967)	cmacpiB347
CmaCh16G005430	Cucumber (Chinese Long) v2	cmacuB343
CmaCh16G005430	Melon (DHL92) v3.5.1	cmameB284
CmaCh16G005430	Melon (DHL92) v3.5.1	cmameB301
CmaCh16G005430	Watermelon (Charleston Gray)	cmawcgB290
CmaCh16G005430	Watermelon (97103) v1	cmawmB319
CmaCh16G005430	Bottle gourd (USVL1VR-Ls)	cmalsiB300
CmaCh16G005430	Bottle gourd (USVL1VR-Ls)	cmalsiB321
CmaCh16G005430	Cucumber (Gy14) v2	cgybcmaB338
CmaCh16G005430	Cucumber (Gy14) v2	cgybcmaB620