ClCG07G011610 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG07G011610
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr07 : 27706097 .. 27706489 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAGCAACTTGATTTCAACCTTGAACAAAAAGCTGCAGGCTGTCGAAATTAGTAATCGCGGCAGACGAACGAAGAAGACCACTAATTACGCATACAGAGACGATCTGAGCAAGAAGAACCCGTCGCCGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCCGACACAGAACCGGTGATAATCGCCATTACTGACACAGAGGAGCGGATTAAAGAGGAGGAAACAGAGAAGAAAGTTGTGAGAATTACGGTGAAATTAACGAAACAAGAAGCGAATCGAATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTCGATTTCGGAGATGTGGCTTGTGAACTCATGCGAATTCCTGCAACTCGAGTTAGTTCATCAATGTTGGCCAATTGA

mRNA sequence

ATGATCAGCAACTTGATTTCAACCTTGAACAAAAAGCTGCAGGCTGTCGAAATTAGTAATCGCGGCAGACGAACGAAGAAGACCACTAATTACGCATACAGAGACGATCTGAGCAAGAAGAACCCGTCGCCGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCCGACACAGAACCGGTGATAATCGCCATTACTGACACAGAGGAGCGGATTAAAGAGGAGGAAACAGAGAAGAAAGTTGTGAGAATTACGGTGAAATTAACGAAACAAGAAGCGAATCGAATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTCGATTTCGGAGATGTGGCTTGTGAACTCATGCGAATTCCTGCAACTCGAGTTAGTTCATCAATGTTGGCCAATTGA

Coding sequence (CDS)

ATGATCAGCAACTTGATTTCAACCTTGAACAAAAAGCTGCAGGCTGTCGAAATTAGTAATCGCGGCAGACGAACGAAGAAGACCACTAATTACGCATACAGAGACGATCTGAGCAAGAAGAACCCGTCGCCGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCCGACACAGAACCGGTGATAATCGCCATTACTGACACAGAGGAGCGGATTAAAGAGGAGGAAACAGAGAAGAAAGTTGTGAGAATTACGGTGAAATTAACGAAACAAGAAGCGAATCGAATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTCGATTTCGGAGATGTGGCTTGTGAACTCATGCGAATTCCTGCAACTCGAGTTAGTTCATCAATGTTGGCCAATTGA

Protein sequence

MISNLISTLNKKLQAVEISNRGRRTKKTTNYAYRDDLSKKNPSPEIKKVKKRVRFADTEPVIIAITDTEERIKEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLDFGDVACELMRIPATRVSSSMLAN

Homology

[Close]

BLAST of ClCG07G011610 vs. TrEMBL
Match: A0A0A0KYE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 7.5e-45
Identity = 108/143 (75.52%), Postives = 117/143 (81.82%), Query Frame = 1


Query: 1   MISNLISTLNKKLQAVEISNRGRRTKKTTNYAYRDDLSKKNPSP------------EIKK 60
           MISNLIS+LNKKLQAVEIS+R +RTKKT  Y YRD+L+KKN SP            EIKK
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKKTA-YVYRDNLTKKNHSPPSSSSSPQHQPEEIKK 60

Query: 61  VKKRVRFADTEPVIIAI-TDTEERIKEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLD 120
           VKKRVRFADTEPVIIAI TD EE   E ETEKKVVRITVKLTKQEANRMLSRCS+GGVL+
Sbjct: 61  VKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLE 120

Query: 121 FGDVACELMRIPATRVSSSMLAN 131
           FGDVA ELMRIP TRV SS++AN
Sbjct: 121 FGDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of ClCG07G011610 vs. TrEMBL
Match: A0A0A0KZ22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G091930 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.6e-24
Identity = 70/116 (60.34%), Postives = 78/116 (67.24%), Query Frame = 1


Query: 27  KTTNYAYRDDLSKKNPSP------------EIKKVKKRVRFADTEPVIIAITDTEERIKE 86
           K   Y YRDDL+KKN SP            EIKKVKKRVRF DTEP        EE   E
Sbjct: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEP--------EEEELE 61

Query: 87  EETEKKVVRITVKLTKQEANRMLSRCSDGGVLDFGDVACELMRIPATRVSSSMLAN 131
           +ETEK V RI VKL KQEAN+MLSRC +GGVL+FGDV  ELMRIP TRVSSS++ +
Sbjct: 62  DETEKNV-RIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108

[Close]

BLAST of ClCG07G011610 vs. TrEMBL
Match: A0A0B2RTC6_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_004843 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-14
Identity = 56/133 (42.11%), Postives = 76/133 (57.14%), Query Frame = 1


Query: 1   MISNLISTLNKKLQAVEISNRGRRTKKTTNYAYRDDL-SKKNPS--PEIKKVKKRVRFAD 60
           M+  + + LNKK++            K T   YRD+L +KK PS  P    VKK VRFAD
Sbjct: 1   MMHTMFACLNKKVE---------ENLKVTKAVYRDELITKKKPSTVPSKALVKKSVRFAD 60

Query: 61  TEPVIIAITDTEE------RIKEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLDFGDV 120
           +EP I    DT E      R   +  E   +R+ +K+TK+EA R+LS+C +GGVL+F DV
Sbjct: 61  SEPSIFG-EDTNEKKLVKGRCSSDGDESGGIRVKLKMTKEEAARLLSKCKEGGVLEFKDV 120

Query: 121 ACELMRIPATRVS 125
           A EL+ +P  RVS
Sbjct: 121 ARELVALPLNRVS 123

[Close]

BLAST of ClCG07G011610 vs. TrEMBL
Match: A0A0R0IME2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G023200 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-14
Identity = 49/105 (46.67%), Postives = 70/105 (66.67%), Query Frame = 1


Query: 27  KTTNYAYRDDLSKKNPSPEIKKVKKRVRFADTEPVIIAITDTEERIKE-------EETEK 86
           + T   YRD+L+KK P    K VKK VRFA++EP I+   D+E+  ++       E  EK
Sbjct: 78  EVTKPVYRDELTKKQPPR--KTVKKTVRFAESEPTILG-EDSEKEFEKTRWGSGNEVGEK 137

Query: 87  KVVRITVKLTKQEANRMLSRCSDGGVLDFGDVACELMRIPATRVS 125
           + +R+ +KLTK+EA R+LS+C++GG+L F DVA EL+ IP  RVS
Sbjct: 138 EGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRVS 179

[Close]

BLAST of ClCG07G011610 vs. TrEMBL
Match: A0A0B2QAC3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_002834 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-14
Identity = 49/105 (46.67%), Postives = 70/105 (66.67%), Query Frame = 1


Query: 27  KTTNYAYRDDLSKKNPSPEIKKVKKRVRFADTEPVIIAITDTEERIKE-------EETEK 86
           + T   YRD+L+KK P    K VKK VRFA++EP I+   D+E+  ++       E  EK
Sbjct: 24  EVTKPVYRDELTKKQPPR--KTVKKTVRFAESEPTILG-EDSEKEFEKTRWGSGNEVGEK 83

Query: 87  KVVRITVKLTKQEANRMLSRCSDGGVLDFGDVACELMRIPATRVS 125
           + +R+ +KLTK+EA R+LS+C++GG+L F DVA EL+ IP  RVS
Sbjct: 84  EGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRVS 125

[Close]

BLAST of ClCG07G011610 vs. NCBI nr
Match: gi|659102097|ref|XP_008451951.1| (PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo])

HSP 1 Score: 189.5 bits (480), Expect = 3.7e-45
Identity = 110/143 (76.92%), Postives = 119/143 (83.22%), Query Frame = 1


Query: 1   MISNLISTLNKKLQAVEISNRGRRTKKTTNYAYRDDLSKKNPSP------------EIKK 60
           MISNLIS+LNKKLQAVEISNR +RTKKTT Y YRDDL+KK  SP            EIKK
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKKTT-YVYRDDLTKKKHSPPLSSSSPQHQPAEIKK 60

Query: 61  VKKRVRFADTEPVIIAI-TDTEERIKEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLD 120
           VKKRVRFADTEPVIIAI TD EE  +EEETEKKVVRITVKLTKQEANRMLSRCS+ GVL+
Sbjct: 61  VKKRVRFADTEPVIIAISTDREE--EEEETEKKVVRITVKLTKQEANRMLSRCSNDGVLE 120

Query: 121 FGDVACELMRIPATRVSSSMLAN 131
           FGDVA EL+RIP TRVSSS++AN
Sbjct: 121 FGDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of ClCG07G011610 vs. NCBI nr
Match: gi|778691062|ref|XP_011653217.1| (PREDICTED: uncharacterized protein LOC105435188 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-44
Identity = 108/143 (75.52%), Postives = 117/143 (81.82%), Query Frame = 1


Query: 1   MISNLISTLNKKLQAVEISNRGRRTKKTTNYAYRDDLSKKNPSP------------EIKK 60
           MISNLIS+LNKKLQAVEIS+R +RTKKT  Y YRD+L+KKN SP            EIKK
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKKTA-YVYRDNLTKKNHSPPSSSSSPQHQPEEIKK 60

Query: 61  VKKRVRFADTEPVIIAI-TDTEERIKEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLD 120
           VKKRVRFADTEPVIIAI TD EE   E ETEKKVVRITVKLTKQEANRMLSRCS+GGVL+
Sbjct: 61  VKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLE 120

Query: 121 FGDVACELMRIPATRVSSSMLAN 131
           FGDVA ELMRIP TRV SS++AN
Sbjct: 121 FGDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of ClCG07G011610 vs. NCBI nr
Match: gi|700198469|gb|KGN53627.1| (hypothetical protein Csa_4G091930 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 8.0e-24
Identity = 70/116 (60.34%), Postives = 78/116 (67.24%), Query Frame = 1


Query: 27  KTTNYAYRDDLSKKNPSP------------EIKKVKKRVRFADTEPVIIAITDTEERIKE 86
           K   Y YRDDL+KKN SP            EIKKVKKRVRF DTEP        EE   E
Sbjct: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEP--------EEEELE 61

Query: 87  EETEKKVVRITVKLTKQEANRMLSRCSDGGVLDFGDVACELMRIPATRVSSSMLAN 131
           +ETEK V RI VKL KQEAN+MLSRC +GGVL+FGDV  ELMRIP TRVSSS++ +
Sbjct: 62  DETEKNV-RIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108

[Close]

BLAST of ClCG07G011610 vs. NCBI nr
Match: gi|947092735|gb|KRH41320.1| (hypothetical protein GLYMA_08G023200 [Glycine max])

HSP 1 Score: 86.3 bits (212), Expect = 4.4e-14
Identity = 49/105 (46.67%), Postives = 70/105 (66.67%), Query Frame = 1


Query: 27  KTTNYAYRDDLSKKNPSPEIKKVKKRVRFADTEPVIIAITDTEERIKE-------EETEK 86
           + T   YRD+L+KK P    K VKK VRFA++EP I+   D+E+  ++       E  EK
Sbjct: 78  EVTKPVYRDELTKKQPPR--KTVKKTVRFAESEPTILG-EDSEKEFEKTRWGSGNEVGEK 137

Query: 87  KVVRITVKLTKQEANRMLSRCSDGGVLDFGDVACELMRIPATRVS 125
           + +R+ +KLTK+EA R+LS+C++GG+L F DVA EL+ IP  RVS
Sbjct: 138 EGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRVS 179

[Close]

BLAST of ClCG07G011610 vs. NCBI nr
Match: gi|734363676|gb|KHN16737.1| (hypothetical protein glysoja_002834 [Glycine soja])

HSP 1 Score: 86.3 bits (212), Expect = 4.4e-14
Identity = 49/105 (46.67%), Postives = 70/105 (66.67%), Query Frame = 1


Query: 27  KTTNYAYRDDLSKKNPSPEIKKVKKRVRFADTEPVIIAITDTEERIKE-------EETEK 86
           + T   YRD+L+KK P    K VKK VRFA++EP I+   D+E+  ++       E  EK
Sbjct: 24  EVTKPVYRDELTKKQPPR--KTVKKTVRFAESEPTILG-EDSEKEFEKTRWGSGNEVGEK 83

Query: 87  KVVRITVKLTKQEANRMLSRCSDGGVLDFGDVACELMRIPATRVS 125
           + +R+ +KLTK+EA R+LS+C++GG+L F DVA EL+ IP  RVS
Sbjct: 84  EGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRVS 125

The following BLAST results are available for this feature:

BLAST of ClCG07G011610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYE1_CUCSA	7.5e-45	75.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052080 PE=4 SV=1	[more]
A0A0A0KZ22_CUCSA	5.6e-24	60.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G091930 PE=4 SV=1	[more]
A0A0B2RTC6_GLYSO	3.1e-14	42.11	Uncharacterized protein OS=Glycine soja GN=glysoja_004843 PE=4 SV=1	[more]
A0A0R0IME2_SOYBN	3.1e-14	46.67	Uncharacterized protein OS=Glycine max GN=GLYMA_08G023200 PE=4 SV=1	[more]
A0A0B2QAC3_GLYSO	3.1e-14	46.67	Uncharacterized protein OS=Glycine soja GN=glysoja_002834 PE=4 SV=1	[more]

BLAST of ClCG07G011610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102097\|ref\|XP_008451951.1\|	3.7e-45	76.92	PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo]	[more]
gi\|778691062\|ref\|XP_011653217.1\|	1.1e-44	75.52	PREDICTED: uncharacterized protein LOC105435188 [Cucumis sativus]	[more]
gi\|700198469\|gb\|KGN53627.1\|	8.0e-24	60.34	hypothetical protein Csa_4G091930 [Cucumis sativus]	[more]
gi\|947092735\|gb\|KRH41320.1\|	4.4e-14	46.67	hypothetical protein GLYMA_08G023200 [Glycine max]	[more]
gi\|734363676\|gb\|KHN16737.1\|	4.4e-14	46.67	hypothetical protein glysoja_002834 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G011610.1	ClCG07G011610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36782	FAMILY NOT NAMED	coord: 2..124 score: 9.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG07G011610	Csa4G052080	Cucumber (Chinese Long) v2	cuwcgB324
ClCG07G011610	MELO3C016295	Melon (DHL92) v3.5.1	mewcgB497
ClCG07G011610	Cla012804	Watermelon (97103) v1	wcgwmB371
ClCG07G011610	Cla97C07G138350	Watermelon (97103) v2	wcgwmbB307
ClCG07G011610	Bhi01G002300	Wax gourd	wcgwgoB572
ClCG07G011610	CSPI04G06390	Wild cucumber (PI 183967)	cpiwcgB341
ClCG07G011610	CmaCh16G005430	Cucurbita maxima (Rimu)	cmawcgB300
ClCG07G011610	CmaCh04G006870	Cucurbita maxima (Rimu)	cmawcgB671
ClCG07G011610	CmoCh04G007320	Cucurbita moschata (Rifu)	cmowcgB672
ClCG07G011610	CmoCh16G005950	Cucurbita moschata (Rifu)	cmowcgB293
ClCG07G011610	Lsi07G007200	Bottle gourd (USVL1VR-Ls)	lsiwcgB412
ClCG07G011610	Cp4.1LG14g02510	Cucurbita pepo (Zucchini)	cpewcgB209
ClCG07G011610	Cp4.1LG01g00530	Cucurbita pepo (Zucchini)	cpewcgB408
ClCG07G011610	CsGy4G006310	Cucumber (Gy14) v2	cgybwcgB302
ClCG07G011610	MELO3C016295.2	Melon (DHL92) v3.6.1	medwcgB492
ClCG07G011610	Carg13071	Silver-seed gourd	carwcgB0049
ClCG07G011610	CsaV3_4G006600	Cucumber (Chinese Long) v3	cucwcgB343

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG07G011610	Melon (DHL92) v3.5.1	mewcgB485
ClCG07G011610	Melon (DHL92) v3.6.1	medwcgB482