Lsi07G007200 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G007200
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr07 : 7789173 .. 7789586 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAGCAACTTGATTTCAAGCTTGAACAAAAAGCTGCAGGCGGTTGAAATCAGTAATCGCTGCAGACGAACGAAGAAGAAGACGACGACTTACGTATACAGAGACGATCTGAGCAAGAAGAAGCAGTCGCCGTCGTTGCAGCAGCAGCCGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCCGATACGGAACCGGTGATAATCGCCATTACTGATACAGAGGAGCGGATTGCAGAGGAGGAAACAGAGAAGAAAGTTGTGAGAATTACGGTGAAATTGACGAAACAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTCGAATTTGGAGATGTGGCTTGTGAACTCATGCGAATTCCTGCAACTCGAGTTAGTTCATCTATGGTGGCCAATTGA

mRNA sequence

ATGATCAGCAACTTGATTTCAAGCTTGAACAAAAAGCTGCAGGCGGTTGAAATCAGTAATCGCTGCAGACGAACGAAGAAGAAGACGACGACTTACGTATACAGAGACGATCTGAGCAAGAAGAAGCAGTCGCCGTCGTTGCAGCAGCAGCCGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCCGATACGGAACCGGTGATAATCGCCATTACTGATACAGAGGAGCGGATTGCAGAGGAGGAAACAGAGAAGAAAGTTGTGAGAATTACGGTGAAATTGACGAAACAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTCGAATTTGGAGATGTGGCTTGTGAACTCATGCGAATTCCTGCAACTCGAGTTAGTTCATCTATGGTGGCCAATTGA

Coding sequence (CDS)

ATGATCAGCAACTTGATTTCAAGCTTGAACAAAAAGCTGCAGGCGGTTGAAATCAGTAATCGCTGCAGACGAACGAAGAAGAAGACGACGACTTACGTATACAGAGACGATCTGAGCAAGAAGAAGCAGTCGCCGTCGTTGCAGCAGCAGCCGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCCGATACGGAACCGGTGATAATCGCCATTACTGATACAGAGGAGCGGATTGCAGAGGAGGAAACAGAGAAGAAAGTTGTGAGAATTACGGTGAAATTGACGAAACAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTCGAATTTGGAGATGTGGCTTGTGAACTCATGCGAATTCCTGCAACTCGAGTTAGTTCATCTATGGTGGCCAATTGA

Protein sequence

MISNLISSLNKKLQAVEISNRCRRTKKKTTTYVYRDDLSKKKQSPSLQQQPEIKKVKKRVRFADTEPVIIAITDTEERIAEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVACELMRIPATRVSSSMVAN

Homology

[Close]

BLAST of Lsi07G007200 vs. TrEMBL
Match: A0A0A0KYE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.1e-45
Identity = 116/144 (80.56%), Postives = 122/144 (84.72%), Query Frame = 1


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKKTTTYVYRDDLSKKKQSP-----SLQQQPE-IK 60
           MISNLISSLNKKLQAVEIS+RC+RTKK  T YVYRD+L+KK  SP     S Q QPE IK
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKK--TAYVYRDNLTKKNHSPPSSSSSPQHQPEEIK 60

Query: 61  KVKKRVRFADTEPVIIAI-TDTEERIAEEETEKKVVRITVKLTKQEANRMLSRCSDGGVL 120
           KVKKRVRFADTEPVIIAI TD EE   E ETEKKVVRITVKLTKQEANRMLSRCS+GGVL
Sbjct: 61  KVKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVL 120

Query: 121 EFGDVACELMRIPATRVSSSMVAN 138
           EFGDVA ELMRIP TRV SS+VAN
Sbjct: 121 EFGDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of Lsi07G007200 vs. TrEMBL
Match: A0A0A0KZ22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G091930 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.5e-24
Identity = 74/116 (63.79%), Postives = 81/116 (69.83%), Query Frame = 1


Query: 28  KTTTYVYRDDLSKKKQSPSL------QQQPEIKKVKKRVRFADTEPVIIAITDTEERIAE 87
           K  TYVYRDDL+KK  SP        +Q  EIKKVKKRVRF DTEP        EE   E
Sbjct: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEP--------EEEELE 61

Query: 88  EETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVACELMRIPATRVSSSMVAN 138
           +ETEK  VRI VKL KQEAN+MLSRC +GGVLEFGDV  ELMRIP TRVSSS+V +
Sbjct: 62  DETEKN-VRIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108

[Close]

BLAST of Lsi07G007200 vs. TrEMBL
Match: A0A0R0IME2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G023200 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-12
Identity = 51/111 (45.95%), Postives = 72/111 (64.86%), Query Frame = 1


Query: 28  KTTTYVYRDDLSKKKQSPSLQQQPEIKKVKKRVRFADTEPVIIAITDTEERIAE------ 87
           + T  VYRD+L+KK        QP  K VKK VRFA++EP I+   D+E+   +      
Sbjct: 78  EVTKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILG-EDSEKEFEKTRWGSG 137

Query: 88  -EETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVACELMRIPATRVS 132
            E  EK+ +R+ +KLTK+EA R+LS+C++GG+L+F DVA EL+ IP  RVS
Sbjct: 138 NEVGEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRVS 179

[Close]

BLAST of Lsi07G007200 vs. TrEMBL
Match: K7L4J7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-12
Identity = 51/111 (45.95%), Postives = 72/111 (64.86%), Query Frame = 1


Query: 28  KTTTYVYRDDLSKKKQSPSLQQQPEIKKVKKRVRFADTEPVIIAITDTEERIAE------ 87
           + T  VYRD+L+KK        QP  K VKK VRFA++EP I+   D+E+   +      
Sbjct: 24  EVTKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILG-EDSEKEFEKTRWGSG 83

Query: 88  -EETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVACELMRIPATRVS 132
            E  EK+ +R+ +KLTK+EA R+LS+C++GG+L+F DVA EL+ IP  RVS
Sbjct: 84  NEVGEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRVS 125

[Close]

BLAST of Lsi07G007200 vs. TrEMBL
Match: A0A0B2QAC3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_002834 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-12
Identity = 51/111 (45.95%), Postives = 72/111 (64.86%), Query Frame = 1


Query: 28  KTTTYVYRDDLSKKKQSPSLQQQPEIKKVKKRVRFADTEPVIIAITDTEERIAE------ 87
           + T  VYRD+L+KK        QP  K VKK VRFA++EP I+   D+E+   +      
Sbjct: 24  EVTKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILG-EDSEKEFEKTRWGSG 83

Query: 88  -EETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVACELMRIPATRVS 132
            E  EK+ +R+ +KLTK+EA R+LS+C++GG+L+F DVA EL+ IP  RVS
Sbjct: 84  NEVGEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRVS 125

[Close]

BLAST of Lsi07G007200 vs. NCBI nr
Match: gi|659102097|ref|XP_008451951.1| (PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo])

HSP 1 Score: 196.1 bits (497), Expect = 4.1e-47
Identity = 120/144 (83.33%), Postives = 125/144 (86.81%), Query Frame = 1


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKKTTTYVYRDDLSKKKQSPSL-----QQQP-EIK 60
           MISNLISSLNKKLQAVEISNRC+RTKK  TTYVYRDDL+KKK SP L     Q QP EIK
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKK--TTYVYRDDLTKKKHSPPLSSSSPQHQPAEIK 60

Query: 61  KVKKRVRFADTEPVIIAI-TDTEERIAEEETEKKVVRITVKLTKQEANRMLSRCSDGGVL 120
           KVKKRVRFADTEPVIIAI TD EE   EEETEKKVVRITVKLTKQEANRMLSRCS+ GVL
Sbjct: 61  KVKKRVRFADTEPVIIAISTDREEE--EEETEKKVVRITVKLTKQEANRMLSRCSNDGVL 120

Query: 121 EFGDVACELMRIPATRVSSSMVAN 138
           EFGDVA EL+RIP TRVSSS+VAN
Sbjct: 121 EFGDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of Lsi07G007200 vs. NCBI nr
Match: gi|778691062|ref|XP_011653217.1| (PREDICTED: uncharacterized protein LOC105435188 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 3.0e-45
Identity = 116/144 (80.56%), Postives = 122/144 (84.72%), Query Frame = 1


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKKTTTYVYRDDLSKKKQSP-----SLQQQPE-IK 60
           MISNLISSLNKKLQAVEIS+RC+RTKK  T YVYRD+L+KK  SP     S Q QPE IK
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKK--TAYVYRDNLTKKNHSPPSSSSSPQHQPEEIK 60

Query: 61  KVKKRVRFADTEPVIIAI-TDTEERIAEEETEKKVVRITVKLTKQEANRMLSRCSDGGVL 120
           KVKKRVRFADTEPVIIAI TD EE   E ETEKKVVRITVKLTKQEANRMLSRCS+GGVL
Sbjct: 61  KVKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVL 120

Query: 121 EFGDVACELMRIPATRVSSSMVAN 138
           EFGDVA ELMRIP TRV SS+VAN
Sbjct: 121 EFGDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of Lsi07G007200 vs. NCBI nr
Match: gi|700198469|gb|KGN53627.1| (hypothetical protein Csa_4G091930 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 6.4e-24
Identity = 74/116 (63.79%), Postives = 81/116 (69.83%), Query Frame = 1


Query: 28  KTTTYVYRDDLSKKKQSPSL------QQQPEIKKVKKRVRFADTEPVIIAITDTEERIAE 87
           K  TYVYRDDL+KK  SP        +Q  EIKKVKKRVRF DTEP        EE   E
Sbjct: 2   KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEP--------EEEELE 61

Query: 88  EETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVACELMRIPATRVSSSMVAN 138
           +ETEK  VRI VKL KQEAN+MLSRC +GGVLEFGDV  ELMRIP TRVSSS+V +
Sbjct: 62  DETEKN-VRIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108

[Close]

BLAST of Lsi07G007200 vs. NCBI nr
Match: gi|947092735|gb|KRH41320.1| (hypothetical protein GLYMA_08G023200 [Glycine max])

HSP 1 Score: 80.1 bits (196), Expect = 3.3e-12
Identity = 51/111 (45.95%), Postives = 72/111 (64.86%), Query Frame = 1


Query: 28  KTTTYVYRDDLSKKKQSPSLQQQPEIKKVKKRVRFADTEPVIIAITDTEERIAE------ 87
           + T  VYRD+L+KK        QP  K VKK VRFA++EP I+   D+E+   +      
Sbjct: 78  EVTKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILG-EDSEKEFEKTRWGSG 137

Query: 88  -EETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVACELMRIPATRVS 132
            E  EK+ +R+ +KLTK+EA R+LS+C++GG+L+F DVA EL+ IP  RVS
Sbjct: 138 NEVGEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRVS 179

[Close]

BLAST of Lsi07G007200 vs. NCBI nr
Match: gi|734363676|gb|KHN16737.1| (hypothetical protein glysoja_002834 [Glycine soja])

HSP 1 Score: 80.1 bits (196), Expect = 3.3e-12
Identity = 51/111 (45.95%), Postives = 72/111 (64.86%), Query Frame = 1


Query: 28  KTTTYVYRDDLSKKKQSPSLQQQPEIKKVKKRVRFADTEPVIIAITDTEERIAE------ 87
           + T  VYRD+L+KK        QP  K VKK VRFA++EP I+   D+E+   +      
Sbjct: 24  EVTKPVYRDELTKK--------QPPRKTVKKTVRFAESEPTILG-EDSEKEFEKTRWGSG 83

Query: 88  -EETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVACELMRIPATRVS 132
            E  EK+ +R+ +KLTK+EA R+LS+C++GG+L+F DVA EL+ IP  RVS
Sbjct: 84  NEVGEKEGMRVRIKLTKEEAARLLSKCNNGGILQFKDVAHELVLIPVNRVS 125

The following BLAST results are available for this feature:

BLAST of Lsi07G007200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi07G007200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYE1_CUCSA	2.1e-45	80.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052080 PE=4 SV=1	[more]
A0A0A0KZ22_CUCSA	4.5e-24	63.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G091930 PE=4 SV=1	[more]
A0A0R0IME2_SOYBN	2.3e-12	45.95	Uncharacterized protein OS=Glycine max GN=GLYMA_08G023200 PE=4 SV=1	[more]
K7L4J7_SOYBN	2.3e-12	45.95	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2QAC3_GLYSO	2.3e-12	45.95	Uncharacterized protein OS=Glycine soja GN=glysoja_002834 PE=4 SV=1	[more]

BLAST of Lsi07G007200 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi07G007200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102097\|ref\|XP_008451951.1\|	4.1e-47	83.33	PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo]	[more]
gi\|778691062\|ref\|XP_011653217.1\|	3.0e-45	80.56	PREDICTED: uncharacterized protein LOC105435188 [Cucumis sativus]	[more]
gi\|700198469\|gb\|KGN53627.1\|	6.4e-24	63.79	hypothetical protein Csa_4G091930 [Cucumis sativus]	[more]
gi\|947092735\|gb\|KRH41320.1\|	3.3e-12	45.95	hypothetical protein GLYMA_08G023200 [Glycine max]	[more]
gi\|734363676\|gb\|KHN16737.1\|	3.3e-12	45.95	hypothetical protein glysoja_002834 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G007200.1	Lsi07G007200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36782	FAMILY NOT NAMED	coord: 2..131 score: 7.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G007200	Csa4G052080	Cucumber (Chinese Long) v2	culsiB304
Lsi07G007200	CSPI04G06390	Wild cucumber (PI 183967)	cpilsiB304
Lsi07G007200	CmaCh04G006870	Cucurbita maxima (Rimu)	cmalsiB699
Lsi07G007200	CmaCh16G005430	Cucurbita maxima (Rimu)	cmalsiB325
Lsi07G007200	CmoCh16G005950	Cucurbita moschata (Rifu)	cmolsiB314
Lsi07G007200	CmoCh04G007320	Cucurbita moschata (Rifu)	cmolsiB693
Lsi07G007200	Cla012804	Watermelon (97103) v1	lsiwmB434
Lsi07G007200	MELO3C016295	Melon (DHL92) v3.5.1	lsimeB450
Lsi07G007200	ClCG07G011610	Watermelon (Charleston Gray)	lsiwcgB412
Lsi07G007200	MELO3C016295.2	Melon (DHL92) v3.6.1	lsimedB468
Lsi07G007200	Cla97C07G138350	Watermelon (97103) v2	lsiwmbB411
Lsi07G007200	Bhi01G002300	Wax gourd	lsiwgoB544
Lsi07G007200	Cp4.1LG01g00530	Cucurbita pepo (Zucchini)	cpelsiB378
Lsi07G007200	Cp4.1LG14g02510	Cucurbita pepo (Zucchini)	cpelsiB184
Lsi07G007200	CsGy4G006310	Cucumber (Gy14) v2	cgyblsiB278
Lsi07G007200	Carg13071	Silver-seed gourd	carlsiB040
Lsi07G007200	Carg22251	Silver-seed gourd	carlsiB536
Lsi07G007200	CsaV3_4G006600	Cucumber (Chinese Long) v3	cuclsiB323

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G007200	Cucumber (Gy14) v2	cgyblsiB353
Lsi07G007200	Melon (DHL92) v3.6.1	lsimedB447
Lsi07G007200	Melon (DHL92) v3.6.1	lsimedB473
Lsi07G007200	Silver-seed gourd	carlsiB328
Lsi07G007200	Cucumber (Chinese Long) v3	cuclsiB410
Lsi07G007200	Watermelon (97103) v2	lsiwmbB394
Lsi07G007200	Wax gourd	lsiwgoB542
Lsi07G007200	Bottle gourd (USVL1VR-Ls)	lsilsiB020
Lsi07G007200	Cucumber (Gy14) v1	cgylsiB492
Lsi07G007200	Cucurbita maxima (Rimu)	cmalsiB292
Lsi07G007200	Cucurbita moschata (Rifu)	cmolsiB280
Lsi07G007200	Cucurbita pepo (Zucchini)	cpelsiB157
Lsi07G007200	Wild cucumber (PI 183967)	cpilsiB391
Lsi07G007200	Cucumber (Chinese Long) v2	culsiB387
Lsi07G007200	Melon (DHL92) v3.5.1	lsimeB427
Lsi07G007200	Melon (DHL92) v3.5.1	lsimeB455
Lsi07G007200	Watermelon (Charleston Gray)	lsiwcgB397
Lsi07G007200	Watermelon (97103) v1	lsiwmB456