CmoCh20G001710 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G001710
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Gb:AAF02129.1, putative
Location	Cmo_Chr20 : 863095 .. 863409 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAGAGGTCGAGAAGTAGCGAGCCAAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGGTCGTCATCGGACATATCGGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGCGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTCATGTATGTGATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAACGTCTTCCTTGATTTCTTCAAGCACCAGCAGCAGCAGCAGCAGCATCATGCCTAG

mRNA sequence

ATGAGCAAGAGGTCGAGAAGTAGCGAGCCAAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGGTCGTCATCGGACATATCGGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGCGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTCATGTATGTGATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAACGTCTTCCTTGATTTCTTCAAGCACCAGCAGCAGCAGCAGCAGCATCATGCCTAG

Coding sequence (CDS)

ATGAGCAAGAGGTCGAGAAGTAGCGAGCCAAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGGTCGTCATCGGACATATCGGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGCGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTCATGTATGTGATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAACGTCTTCCTTGATTTCTTCAAGCACCAGCAGCAGCAGCAGCAGCATCATGCCTAG

Homology

[Close]

BLAST of CmoCh20G001710 vs. TrEMBL
Match: A0A0A0KJX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425780 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-30
Identity = 84/114 (73.68%), Postives = 89/114 (78.07%), Query Frame = 1


Query: 1   MSKRSRSSEPKVELRVNLNRLPSPATSSLS-----GSGS-SSDISVENSCLGWEG----G 60
           MSKRSRSSE +VELRVNLNR P+ ++SS S     GSGS SS+ISV NSCL  EG    G
Sbjct: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60

Query: 61  VEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQQHHA 105
             EEIITRSMMLVGCPGCFMYVMLTEKSSQCPKC NNVFLDFFK    QQ HHA
Sbjct: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFK----QQPHHA 110

[Close]

BLAST of CmoCh20G001710 vs. TrEMBL
Match: V7AGR8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G097300g PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.7e-12
Identity = 50/108 (46.30%), Postives = 74/108 (68.52%), Query Frame = 1


Query: 1   MSKRSRSSEPKVELRVNLNRLPSPATSS--LSGSGSSSDISV---ENSCLGWEGGVEEEI 60
           M KR+RS  P++E+R++L+   +P +SS   S S +SS +SV   E+SC+  E  VEE  
Sbjct: 1   MKKRARS--PRLEVRLSLSPPRTPVSSSDPSSESSTSSQVSVQSLESSCVSCE--VEE-- 60

Query: 61  ITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQQHH 104
            TR+M+LVGCP C MYVML+E   +CPKC + V LDF K+++  +++H
Sbjct: 61  -TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLKNKENSKKNH 101

[Close]

BLAST of CmoCh20G001710 vs. TrEMBL
Match: M4F180_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-11
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 1


Query: 1  MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEIITRS 60
          MS+R+RS  PK+EL++NL+  PS     S+  S S S+ +  NSC+  E   EE     S
Sbjct: 1  MSRRNRSG-PKLELKLNLSPSPSQGEQMSMVRSPSRSNTASPNSCVSSEPSQEEMETPIS 60

Query: 61 MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFF 94
          M+LVGCP C MYVML++   +CPKC + V LDFF
Sbjct: 61 MVLVGCPRCLMYVMLSQDEPKCPKCKSTVLLDFF 93

[Close]

BLAST of CmoCh20G001710 vs. TrEMBL
Match: A0A078F242_BRANA (BnaA05g27460D protein OS=Brassica napus GN=BnaA05g27460D PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-11
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 1


Query: 1  MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEIITRS 60
          MS+R+RS  PK+EL++NL+  PS     S+  S S S+ +  NSC+  E   EE     S
Sbjct: 1  MSRRNRSG-PKLELKLNLSPPPSQGEQMSMVRSPSRSNTASPNSCVSSEPSQEEMETPIS 60

Query: 61 MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFF 94
          M+LVGCP C MYVML++   +CPKC + V LDFF
Sbjct: 61 MVLVGCPRCLMYVMLSQDEPKCPKCKSTVLLDFF 93

[Close]

BLAST of CmoCh20G001710 vs. TrEMBL
Match: V4M909_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021790mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.3e-11
Identity = 46/97 (47.42%), Postives = 64/97 (65.98%), Query Frame = 1


Query: 1  MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEIITRS 60
          MS+R+ S+ PK+EL++NL+  PS A+  SL  S + S+ +  +SC+  E   EE   T S
Sbjct: 1  MSRRN-SNWPKLELKLNLSPPPSQASQMSLVRSPTRSNTTSPSSCVSSESNQEEMETTTS 60

Query: 61 MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQ 97
          M+LVGCP C MYVML++   +CPKC + V LDF  HQ
Sbjct: 61 MVLVGCPRCLMYVMLSQDDPKCPKCKSTVLLDFL-HQ 95

[Close]

BLAST of CmoCh20G001710 vs. TAIR10
Match: AT3G11600.1 (AT3G11600.1 unknown protein)

HSP 1 Score: 75.1 bits (183), Expect = 2.9e-14
Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = 1


Query: 1  MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEIITRS 60
          MS+R+++  PK+ELR+NL+  PS A+  SL  S + S+ +  +SC+  E   EE     S
Sbjct: 1  MSRRNKNG-PKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVSSETNQEENETITS 60

Query: 61 MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFK 95
          M+LVGCP C MYVML++   +CPKC + V LDF +
Sbjct: 61 MVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQ 94

[Close]

BLAST of CmoCh20G001710 vs. TAIR10
Match: AT5G06270.1 (AT5G06270.1 unknown protein)

HSP 1 Score: 67.0 bits (162), Expect = 7.8e-12
Identity = 46/106 (43.40%), Postives = 60/106 (56.60%), Query Frame = 1


Query: 1  MSKRSRSSEPKVELRVNLNRLPSPATSSL-------SGSGSSSDISVENSCLGWEGGVEE 60
          MS+RS    PK+EL++NL    SP TSS        S S ++S  S  +SC+  E   +E
Sbjct: 1  MSRRS----PKLELKLNL----SPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDE 60

Query: 61 EII-------TRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDF 93
            +       T SM+LVGCP C MYVML+E   +CPKC + V LDF
Sbjct: 61 PSVRYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF 98

[Close]

BLAST of CmoCh20G001710 vs. TAIR10
Match: AT5G22270.1 (AT5G22270.1 unknown protein)

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-07
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 14 LRVNLNRLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVM 73
          L + LN  PS  +S L+ S SSS  S E      EGG  E    +SM++VGCP C MY++
Sbjct: 11 LDLKLNISPSLDSSLLTESSSSSLCSEEA-----EGGGGE---AKSMVVVGCPNCIMYII 70

Query: 74 LT-EKSSQCPKCHNNVFLDF 93
           + E   +CP+C+++V LDF
Sbjct: 71 TSLENDPRCPRCNSHVLLDF 82

[Close]

BLAST of CmoCh20G001710 vs. NCBI nr
Match: gi|700192837|gb|KGN48041.1| (hypothetical protein Csa_6G425780 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 2.7e-30
Identity = 84/114 (73.68%), Postives = 89/114 (78.07%), Query Frame = 1


Query: 1   MSKRSRSSEPKVELRVNLNRLPSPATSSLS-----GSGS-SSDISVENSCLGWEG----G 60
           MSKRSRSSE +VELRVNLNR P+ ++SS S     GSGS SS+ISV NSCL  EG    G
Sbjct: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60

Query: 61  VEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQQHHA 105
             EEIITRSMMLVGCPGCFMYVMLTEKSSQCPKC NNVFLDFFK    QQ HHA
Sbjct: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFK----QQPHHA 110

[Close]

BLAST of CmoCh20G001710 vs. NCBI nr
Match: gi|727583833|ref|XP_010464878.1| (PREDICTED: uncharacterized protein LOC104745369 [Camelina sativa])

HSP 1 Score: 79.7 bits (195), Expect = 3.3e-12
Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = 1


Query: 1  MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEI--IT 60
          MS+R+++  PK+ELR+NL+  PS A+  SL  S + S+ +  +SC+  E   E+EI   T
Sbjct: 1  MSRRNKNG-PKIELRLNLSPPPSQASQMSLVRSPTRSNSTSPSSCVSSETNQEDEIDTTT 60

Query: 61 RSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQ 97
           SM+LVGCP C MYVML++   +CPKC + V LDF  HQ
Sbjct: 61 TSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLHHQ 98

[Close]

BLAST of CmoCh20G001710 vs. NCBI nr
Match: gi|593206576|ref|XP_007132476.1| (hypothetical protein PHAVU_011G097300g [Phaseolus vulgaris])

HSP 1 Score: 78.2 bits (191), Expect = 9.6e-12
Identity = 50/108 (46.30%), Postives = 74/108 (68.52%), Query Frame = 1


Query: 1   MSKRSRSSEPKVELRVNLNRLPSPATSS--LSGSGSSSDISV---ENSCLGWEGGVEEEI 60
           M KR+RS  P++E+R++L+   +P +SS   S S +SS +SV   E+SC+  E  VEE  
Sbjct: 1   MKKRARS--PRLEVRLSLSPPRTPVSSSDPSSESSTSSQVSVQSLESSCVSCE--VEE-- 60

Query: 61  ITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQQHH 104
            TR+M+LVGCP C MYVML+E   +CPKC + V LDF K+++  +++H
Sbjct: 61  -TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLKNKENSKKNH 101

[Close]

BLAST of CmoCh20G001710 vs. NCBI nr
Match: gi|727412775|ref|XP_010497482.1| (PREDICTED: uncharacterized protein LOC104774622 [Camelina sativa])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 1


Query: 1  MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEI--IT 60
          MS+R+++  PK+ELR+NL+   S A+  SL  S + S+ +  +SC+  E   E+EI   T
Sbjct: 1  MSRRNKNG-PKIELRLNLSPPSSQASQMSLVRSPTRSNSTSPSSCVSSETNQEDEIDTTT 60

Query: 61 RSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQ 97
           SM+LVGCP C MYVML+E   +CPKC + V LDF  HQ
Sbjct: 61 TSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHHQ 98

[Close]

BLAST of CmoCh20G001710 vs. NCBI nr
Match: gi|674924808|emb|CDY08510.1| (BnaA05g27460D [Brassica napus])

HSP 1 Score: 76.6 bits (187), Expect = 2.8e-11
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 1


Query: 1  MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEIITRS 60
          MS+R+RS  PK+EL++NL+  PS     S+  S S S+ +  NSC+  E   EE     S
Sbjct: 1  MSRRNRSG-PKLELKLNLSPPPSQGEQMSMVRSPSRSNTASPNSCVSSEPSQEEMETPIS 60

Query: 61 MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFF 94
          M+LVGCP C MYVML++   +CPKC + V LDFF
Sbjct: 61 MVLVGCPRCLMYVMLSQDEPKCPKCKSTVLLDFF 93

The following BLAST results are available for this feature:

BLAST of CmoCh20G001710 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh20G001710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJX5_CUCSA	1.9e-30	73.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425780 PE=4 SV=1	[more]
V7AGR8_PHAVU	6.7e-12	46.30	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G097300g PE=4 SV=1	[more]
M4F180_BRARP	1.5e-11	47.87	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A078F242_BRANA	1.9e-11	47.87	BnaA05g27460D protein OS=Brassica napus GN=BnaA05g27460D PE=4 SV=1	[more]
V4M909_EUTSA	4.3e-11	47.42	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021790mg PE=4 SV=1	[more]

BLAST of CmoCh20G001710 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G11600.1	2.9e-14	45.26	unknown protein	[more]
AT5G06270.1	7.8e-12	43.40	unknown protein	[more]
AT5G22270.1	2.6e-07	42.50	unknown protein	[more]

BLAST of CmoCh20G001710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192837\|gb\|KGN48041.1\|	2.7e-30	73.68	hypothetical protein Csa_6G425780 [Cucumis sativus]	[more]
gi\|727583833\|ref\|XP_010464878.1\|	3.3e-12	47.47	PREDICTED: uncharacterized protein LOC104745369 [Camelina sativa]	[more]
gi\|593206576\|ref\|XP_007132476.1\|	9.6e-12	46.30	hypothetical protein PHAVU_011G097300g [Phaseolus vulgaris]	[more]
gi\|727412775\|ref\|XP_010497482.1\|	1.2e-11	47.47	PREDICTED: uncharacterized protein LOC104774622 [Camelina sativa]	[more]
gi\|674924808\|emb\|CDY08510.1\|	2.8e-11	47.87	BnaA05g27460D [Brassica napus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G001710.1	CmoCh20G001710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33177	FAMILY NOT NAMED	coord: 13..93 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh20G001710	Cucsa.185820	Cucumber (Gy14) v1	cgycmoB0532
CmoCh20G001710	CmaCh20G001550	Cucurbita maxima (Rimu)	cmacmoB550
CmoCh20G001710	CmaCh02G013120	Cucurbita maxima (Rimu)	cmacmoB607
CmoCh20G001710	Cla008627	Watermelon (97103) v1	cmowmB520
CmoCh20G001710	Csa6G425780	Cucumber (Chinese Long) v2	cmocuB552
CmoCh20G001710	MELO3C014511	Melon (DHL92) v3.5.1	cmomeB509
CmoCh20G001710	ClCG02G022350	Watermelon (Charleston Gray)	cmowcgB490
CmoCh20G001710	CSPI06G23340	Wild cucumber (PI 183967)	cmocpiB557
CmoCh20G001710	Lsi10G011440	Bottle gourd (USVL1VR-Ls)	cmolsiB484
CmoCh20G001710	Cp4.1LG16g08000	Cucurbita pepo (Zucchini)	cmocpeB517
CmoCh20G001710	Cp4.1LG05g04430	Cucurbita pepo (Zucchini)	cmocpeB535
CmoCh20G001710	MELO3C014511.2	Melon (DHL92) v3.6.1	cmomedB585
CmoCh20G001710	CsaV3_3G037690	Cucumber (Chinese Long) v3	cmocucB0644
CmoCh20G001710	CsaV3_6G038480	Cucumber (Chinese Long) v3	cmocucB0659
CmoCh20G001710	Cla97C02G048440	Watermelon (97103) v2	cmowmbB557
CmoCh20G001710	Bhi10G000135	Wax gourd	cmowgoB0687
CmoCh20G001710	CsGy6G022580	Cucumber (Gy14) v2	cgybcmoB777
CmoCh20G001710	Carg02649	Silver-seed gourd	carcmoB1236
CmoCh20G001710	Carg18417	Silver-seed gourd	carcmoB0559

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh20G001710	CmoCh02G013520	Cucurbita moschata (Rifu)	cmocmoB405

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh20G001710	Cucurbita moschata (Rifu)	cmocmoB210
CmoCh20G001710	Cucurbita moschata (Rifu)	cmocmoB423
CmoCh20G001710	Watermelon (Charleston Gray)	cmowcgB473
CmoCh20G001710	Cucurbita pepo (Zucchini)	cmocpeB523
CmoCh20G001710	Cucurbita pepo (Zucchini)	cmocpeB529
CmoCh20G001710	Cucurbita pepo (Zucchini)	cmocpeB540