Cp4.1LG16g08000 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG16g08000
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionGb|AAF02129.1
LocationCp4.1LG16 : 7898883 .. 7899212 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTTGAAGAGGACGATGAGCAAGAGGTCGAGAAGTAGCGAGCCGAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGGTCGTCGTCGGACATATCGGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGAGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTCATGTATGTGATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAATGTCTTCCTTGATTTCTTCAAGCACCAGCAGCAGCAGCAGCATCATGCCTAG

mRNA sequence

ATGACTTTGAAGAGGACGATGAGCAAGAGGTCGAGAAGTAGCGAGCCGAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGGTCGTCGTCGGACATATCGGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGAGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTCATGTATGTGATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAATGTCTTCCTTGATTTCTTCAAGCACCAGCAGCAGCAGCAGCATCATGCCTAG

Coding sequence (CDS)

ATGACTTTGAAGAGGACGATGAGCAAGAGGTCGAGAAGTAGCGAGCCGAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGGTCGTCGTCGGACATATCGGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGAGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTCATGTATGTGATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAATGTCTTCCTTGATTTCTTCAAGCACCAGCAGCAGCAGCAGCATCATGCCTAG

Protein sequence

MTLKRTMSKRSRSSEPKVELRVNLNRLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQHHA
Homology
[Close]
BLAST of Cp4.1LG16g08000 vs. TrEMBL
Match: A0A0A0KJX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425780 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.5e-30
Identity = 84/113 (74.34%), Postives = 89/113 (78.76%), Query Frame = 1 

Query: 7   MSKRSRSSEPKVELRVNLNRLPSPATSSLS-----GSGS-SSDISVENSCLGWEG----G 66
           MSKRSRSSE +VELRVNLNR P+ ++SS S     GSGS SS+ISV NSCL  EG    G
Sbjct: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60

Query: 67  VEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQHHA 110
             EEIITRSMMLVGCPGCFMYVMLTEKSSQCPKC NNVFLDFFK   QQ HHA
Sbjct: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFK---QQPHHA 110

[Close]
BLAST of Cp4.1LG16g08000 vs. TrEMBL
Match: M4F180_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-11
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 1 

Query: 7   MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEIITRS 66
           MS+R+RS  PK+EL++NL+  PS     S+  S S S+ +  NSC+  E   EE     S
Sbjct: 1   MSRRNRSG-PKLELKLNLSPSPSQGEQMSMVRSPSRSNTASPNSCVSSEPSQEEMETPIS 60

Query: 67  MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFF 100
           M+LVGCP C MYVML++   +CPKC + V LDFF
Sbjct: 61  MVLVGCPRCLMYVMLSQDEPKCPKCKSTVLLDFF 93

[Close]
BLAST of Cp4.1LG16g08000 vs. TrEMBL
Match: A0A078F242_BRANA (BnaA05g27460D protein OS=Brassica napus GN=BnaA05g27460D PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-11
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 1 

Query: 7   MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEIITRS 66
           MS+R+RS  PK+EL++NL+  PS     S+  S S S+ +  NSC+  E   EE     S
Sbjct: 1   MSRRNRSG-PKLELKLNLSPPPSQGEQMSMVRSPSRSNTASPNSCVSSEPSQEEMETPIS 60

Query: 67  MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFF 100
           M+LVGCP C MYVML++   +CPKC + V LDFF
Sbjct: 61  MVLVGCPRCLMYVMLSQDEPKCPKCKSTVLLDFF 93

[Close]
BLAST of Cp4.1LG16g08000 vs. TrEMBL
Match: V7AGR8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G097300g PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.5e-11
Identity = 49/105 (46.67%), Postives = 71/105 (67.62%), Query Frame = 1 

Query: 7   MSKRSRSSEPKVELRVNLNRLPSPATSS--LSGSGSSSDISV---ENSCLGWEGGVEEEI 66
           M KR+RS  P++E+R++L+   +P +SS   S S +SS +SV   E+SC+  E  VEE  
Sbjct: 1   MKKRARS--PRLEVRLSLSPPRTPVSSSDPSSESSTSSQVSVQSLESSCVSCE--VEE-- 60

Query: 67  ITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQ 107
            TR+M+LVGCP C MYVML+E   +CPKC + V LDF K+++  +
Sbjct: 61  -TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLKNKENSK 98

[Close]
BLAST of Cp4.1LG16g08000 vs. TrEMBL
Match: V4M909_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021790mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.9e-11
Identity = 46/97 (47.42%), Postives = 64/97 (65.98%), Query Frame = 1 

Query: 7   MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEIITRS 66
           MS+R+ S+ PK+EL++NL+  PS A+  SL  S + S+ +  +SC+  E   EE   T S
Sbjct: 1   MSRRN-SNWPKLELKLNLSPPPSQASQMSLVRSPTRSNTTSPSSCVSSESNQEEMETTTS 60

Query: 67  MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQ 103
           M+LVGCP C MYVML++   +CPKC + V LDF  HQ
Sbjct: 61  MVLVGCPRCLMYVMLSQDDPKCPKCKSTVLLDFL-HQ 95

[Close]
BLAST of Cp4.1LG16g08000 vs. TAIR10
Match: AT3G11600.1 (AT3G11600.1 unknown protein)

HSP 1 Score: 74.7 bits (182), Expect = 3.9e-14
Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = 1 

Query: 7   MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEIITRS 66
           MS+R+++  PK+ELR+NL+  PS A+  SL  S + S+ +  +SC+  E   EE     S
Sbjct: 1   MSRRNKNG-PKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVSSETNQEENETITS 60

Query: 67  MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFK 101
           M+LVGCP C MYVML++   +CPKC + V LDF +
Sbjct: 61  MVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQ 94

[Close]
BLAST of Cp4.1LG16g08000 vs. TAIR10
Match: AT5G06270.1 (AT5G06270.1 unknown protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-11
Identity = 46/106 (43.40%), Postives = 60/106 (56.60%), Query Frame = 1 

Query: 7  MSKRSRSSEPKVELRVNLNRLPSPATSSL-------SGSGSSSDISVENSCLGWEGGVEE 66
          MS+RS    PK+EL++NL    SP TSS        S S ++S  S  +SC+  E   +E
Sbjct: 1  MSRRS----PKLELKLNL----SPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDE 60

Query: 67 EII-------TRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDF 99
            +       T SM+LVGCP C MYVML+E   +CPKC + V LDF
Sbjct: 61 PSVRYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF 98

[Close]
BLAST of Cp4.1LG16g08000 vs. TAIR10
Match: AT5G22270.1 (AT5G22270.1 unknown protein)

HSP 1 Score: 52.0 bits (123), Expect = 2.7e-07
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 1 

Query: 20 LRVNLNRLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVM 79
          L + LN  PS  +S L+ S SSS  S E      EGG  E    +SM++VGCP C MY++
Sbjct: 11 LDLKLNISPSLDSSLLTESSSSSLCSEEA-----EGGGGE---AKSMVVVGCPNCIMYII 70

Query: 80 LT-EKSSQCPKCHNNVFLDF 99
           + E   +CP+C+++V LDF
Sbjct: 71 TSLENDPRCPRCNSHVLLDF 82

[Close]
BLAST of Cp4.1LG16g08000 vs. NCBI nr
Match: gi|700192837|gb|KGN48041.1| (hypothetical protein Csa_6G425780 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 2.1e-30
Identity = 84/113 (74.34%), Postives = 89/113 (78.76%), Query Frame = 1 

Query: 7   MSKRSRSSEPKVELRVNLNRLPSPATSSLS-----GSGS-SSDISVENSCLGWEG----G 66
           MSKRSRSSE +VELRVNLNR P+ ++SS S     GSGS SS+ISV NSCL  EG    G
Sbjct: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60

Query: 67  VEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQHHA 110
             EEIITRSMMLVGCPGCFMYVMLTEKSSQCPKC NNVFLDFFK   QQ HHA
Sbjct: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFK---QQPHHA 110

[Close]
BLAST of Cp4.1LG16g08000 vs. NCBI nr
Match: gi|727583833|ref|XP_010464878.1| (PREDICTED: uncharacterized protein LOC104745369 [Camelina sativa])

HSP 1 Score: 79.3 bits (194), Expect = 4.5e-12
Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = 1 

Query: 7   MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEI--IT 66
           MS+R+++  PK+ELR+NL+  PS A+  SL  S + S+ +  +SC+  E   E+EI   T
Sbjct: 1   MSRRNKNG-PKIELRLNLSPPPSQASQMSLVRSPTRSNSTSPSSCVSSETNQEDEIDTTT 60

Query: 67  RSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQ 103
            SM+LVGCP C MYVML++   +CPKC + V LDF  HQ
Sbjct: 61  TSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLHHQ 98

[Close]
BLAST of Cp4.1LG16g08000 vs. NCBI nr
Match: gi|727412775|ref|XP_010497482.1| (PREDICTED: uncharacterized protein LOC104774622 [Camelina sativa])

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-11
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 1 

Query: 7   MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEI--IT 66
           MS+R+++  PK+ELR+NL+   S A+  SL  S + S+ +  +SC+  E   E+EI   T
Sbjct: 1   MSRRNKNG-PKIELRLNLSPPSSQASQMSLVRSPTRSNSTSPSSCVSSETNQEDEIDTTT 60

Query: 67  RSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQ 103
            SM+LVGCP C MYVML+E   +CPKC + V LDF  HQ
Sbjct: 61  TSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHHQ 98

[Close]
BLAST of Cp4.1LG16g08000 vs. NCBI nr
Match: gi|674924808|emb|CDY08510.1| (BnaA05g27460D [Brassica napus])

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-11
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 1 

Query: 7   MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEIITRS 66
           MS+R+RS  PK+EL++NL+  PS     S+  S S S+ +  NSC+  E   EE     S
Sbjct: 1   MSRRNRSG-PKLELKLNLSPPPSQGEQMSMVRSPSRSNTASPNSCVSSEPSQEEMETPIS 60

Query: 67  MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFF 100
           M+LVGCP C MYVML++   +CPKC + V LDFF
Sbjct: 61  MVLVGCPRCLMYVMLSQDEPKCPKCKSTVLLDFF 93

[Close]
BLAST of Cp4.1LG16g08000 vs. NCBI nr
Match: gi|727631629|ref|XP_010486829.1| (PREDICTED: uncharacterized protein LOC104764917 [Camelina sativa])

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-11
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 1 

Query: 7   MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEI--IT 66
           MS+R+++  PK+ELR+NL+  P  A+  SL  S + S+ +  +SC+  E   E+EI   T
Sbjct: 1   MSRRNKNG-PKIELRLNLSPPPPQASQMSLVRSPTRSNSTSPSSCVSSETNQEDEIDTTT 60

Query: 67  RSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQ 103
            SM+LVGCP C +YVML++   +CPKC + V LDF  HQ
Sbjct: 61  TSMVLVGCPRCLLYVMLSDDDPKCPKCKSTVLLDFLHHQ 98

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g08000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g08000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJX5_CUCSA1.5e-3074.34Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425780 PE=4 SV=1[more]
M4F180_BRARP1.6e-1147.87Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
A0A078F242_BRANA2.0e-1147.87BnaA05g27460D protein OS=Brassica napus GN=BnaA05g27460D PE=4 SV=1[more]
V7AGR8_PHAVU3.5e-1146.67Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G097300g PE=4 SV=1[more]
V4M909_EUTSA5.9e-1147.42Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021790mg PE=4 SV=1[more]
BLAST of Cp4.1LG16g08000 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G11600.13.9e-1445.26 unknown protein[more]
AT5G06270.11.1e-1143.40 unknown protein[more]
AT5G22270.12.7e-0742.50 unknown protein[more]
BLAST of Cp4.1LG16g08000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192837|gb|KGN48041.1|2.1e-3074.34hypothetical protein Csa_6G425780 [Cucumis sativus][more]
gi|727583833|ref|XP_010464878.1|4.5e-1247.47PREDICTED: uncharacterized protein LOC104745369 [Camelina sativa][more]
gi|727412775|ref|XP_010497482.1|1.7e-1147.47PREDICTED: uncharacterized protein LOC104774622 [Camelina sativa][more]
gi|674924808|emb|CDY08510.1|2.9e-1147.87BnaA05g27460D [Brassica napus][more]
gi|727631629|ref|XP_010486829.1|3.8e-1145.45PREDICTED: uncharacterized protein LOC104764917 [Camelina sativa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g08000.1Cp4.1LG16g08000.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33177FAMILY NOT NAMEDcoord: 3..99
score: 5.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG16g08000Cucsa.185820Cucumber (Gy14) v1cgycpeB0508
Cp4.1LG16g08000CmaCh20G001550Cucurbita maxima (Rimu)cmacpeB564
Cp4.1LG16g08000CmaCh02G013120Cucurbita maxima (Rimu)cmacpeB627
Cp4.1LG16g08000CmoCh02G013520Cucurbita moschata (Rifu)cmocpeB576
Cp4.1LG16g08000CmoCh20G001710Cucurbita moschata (Rifu)cmocpeB517
Cp4.1LG16g08000Cla008627Watermelon (97103) v1cpewmB287
Cp4.1LG16g08000Csa6G425780Cucumber (Chinese Long) v2cpecuB281
Cp4.1LG16g08000MELO3C014511Melon (DHL92) v3.5.1cpemeB278
Cp4.1LG16g08000ClCG02G022350Watermelon (Charleston Gray)cpewcgB255
Cp4.1LG16g08000CSPI06G23340Wild cucumber (PI 183967)cpecpiB283
Cp4.1LG16g08000Lsi10G011440Bottle gourd (USVL1VR-Ls)cpelsiB227
Cp4.1LG16g08000MELO3C014511.2Melon (DHL92) v3.6.1cpemedB324
Cp4.1LG16g08000CsaV3_6G038480Cucumber (Chinese Long) v3cpecucB0348
Cp4.1LG16g08000CsaV3_3G037690Cucumber (Chinese Long) v3cpecucB0341
Cp4.1LG16g08000Bhi10G000135Wax gourdcpewgoB0354
Cp4.1LG16g08000CsGy6G022580Cucumber (Gy14) v2cgybcpeB755
Cp4.1LG16g08000Carg02649Silver-seed gourdcarcpeB1273
Cp4.1LG16g08000Carg18417Silver-seed gourdcarcpeB0579
Cp4.1LG16g08000Carg03648Silver-seed gourdcarcpeB0350
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG16g08000Cp4.1LG05g04430Cucurbita pepo (Zucchini)cpecpeB310
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG16g08000Cucurbita pepo (Zucchini)cpecpeB302
Cp4.1LG16g08000Cucurbita pepo (Zucchini)cpecpeB319
Cp4.1LG16g08000Cucurbita pepo (Zucchini)cpecpeB326
Cp4.1LG16g08000Cucumber (Gy14) v1cgycpeB0640
Cp4.1LG16g08000Cucurbita maxima (Rimu)cmacpeB264
Cp4.1LG16g08000Cucurbita maxima (Rimu)cmacpeB820
Cp4.1LG16g08000Cucurbita moschata (Rifu)cmocpeB228
Cp4.1LG16g08000Cucurbita moschata (Rifu)cmocpeB774
Cp4.1LG16g08000Wild cucumber (PI 183967)cpecpiB276
Cp4.1LG16g08000Cucumber (Chinese Long) v2cpecuB273
Cp4.1LG16g08000Bottle gourd (USVL1VR-Ls)cpelsiB243
Cp4.1LG16g08000Watermelon (Charleston Gray)cpewcgB250
Cp4.1LG16g08000Watermelon (97103) v1cpewmB277
Cp4.1LG16g08000Melon (DHL92) v3.5.1cpemeB277