Carg18417 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18417
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	E3 ubiquitin-protein ligase
Location	Cucurbita_argyrosperma_scaffold_161 : 141933 .. 142253 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAGAGGTCGAGAAGTAGCGAGCCGAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGGTCGTCGTCGGACATATCGGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGAGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTTATGTATGTGATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAATGTCTTCCTTGATTTCTTCAAGCACCAACAGCAGCAGCAGCAGCAGCAGCATCATGCCTAG

mRNA sequence

ATGAGCAAGAGGTCGAGAAGTAGCGAGCCGAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGGTCGTCGTCGGACATATCGGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGAGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTTATGTATGTGATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAATGTCTTCCTTGATTTCTTCAAGCACCAACAGCAGCAGCAGCAGCAGCAGCATCATGCCTAG

Coding sequence (CDS)

ATGAGCAAGAGGTCGAGAAGTAGCGAGCCGAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGGTCGTCGTCGGACATATCGGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGAGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTTATGTATGTGATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAATGTCTTCCTTGATTTCTTCAAGCACCAACAGCAGCAGCAGCAGCAGCAGCATCATGCCTAG

Protein sequence

MSKRSRSSEPKVELRVNLNRLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQQQQHHA

Homology

[Close]

BLAST of Carg18417 vs. NCBI nr
Match: KGN48041.1 (hypothetical protein Csa_6G425780 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 49/59 (83.05%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 39  SVENSCLGWE----GGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFF 94
           SV NSCL  E    GG  EEIITRSMMLVGCPGCFMYVMLTEKSSQCPKC NNVFLDFF
Sbjct: 45  SVGNSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFF 103

[Close]

BLAST of Carg18417 vs. NCBI nr
Match: XP_022575922.1 (uncharacterized protein LOC111215947 [Brassica napus] >CDY08510.1 BnaA05g27460D [Brassica napus])

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 1  MSKRSRSSEPKVELRVNLNRLPS-XXXXXXXXXXXXXDISVENSCLGWEGGVEEEIITRS 60
          MS+R+RS  PK+EL++NL+  PS              + +  NSC+  E   EE     S
Sbjct: 1  MSRRNRSG-PKLELKLNLSPPPSQGEQMSMVRSPSRSNTASPNSCVSSEPSQEEMETPIS 60

Query: 61 MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFF 94
          M+LVGCP C MYVML++   +CPKC + V LDFF
Sbjct: 61 MVLVGCPRCLMYVMLSQDEPKCPKCKSTVLLDFF 93

[Close]

BLAST of Carg18417 vs. NCBI nr
Match: XP_010464878.1 (PREDICTED: uncharacterized protein LOC104745369 [Camelina sativa])

HSP 1 Score: 71.2 bits (173), Expect = 2.3e-09
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 1  MSKRSRSSEPKVELRVNLNRLPSXXXXXXXXXXXXXDISVE-NSCLGWEGGVEEEI--IT 60
          MS+R+++  PK+ELR+NL+  PS               S   +SC+  E   E+EI   T
Sbjct: 1  MSRRNKNG-PKIELRLNLSPPPSQASQMSLVRSPTRSNSTSPSSCVSSETNQEDEIDTTT 60

Query: 61 RSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDF 93
           SM+LVGCP C MYVML++   +CPKC + V LDF
Sbjct: 61 TSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDF 94

[Close]

BLAST of Carg18417 vs. NCBI nr
Match: XP_006296745.1 (uncharacterized protein LOC17893207 [Capsella rubella] >EOA29643.1 hypothetical protein CARUB_v10014943mg [Capsella rubella])

HSP 1 Score: 69.7 bits (169), Expect = 6.7e-09
Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 1  MSKRSRSSEPKVELRVNLNRLPS-XXXXXXXXXXXXXDISVENSCLGWEGGVEEEI--IT 60
          MS+R+++  PK+ELR+N++  PS              + +  +SC+  E   E+EI   T
Sbjct: 1  MSRRNKNG-PKLELRLNISPPPSQASQMSLVLSPTRSNTTSPSSCVSSETNQEDEIDTTT 60

Query: 61 RSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDF 93
           SM+LVGCP C MYVML+E   +CPKC + V LDF
Sbjct: 61 TSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF 94

[Close]

BLAST of Carg18417 vs. NCBI nr
Match: XP_006407430.1 (uncharacterized protein LOC18023255 [Eutrema salsugineum] >ESQ48883.1 hypothetical protein EUTSA_v10021790mg [Eutrema salsugineum])

HSP 1 Score: 69.7 bits (169), Expect = 6.7e-09
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 1  MSKRSRSSEPKVELRVNLNRLPS-XXXXXXXXXXXXXDISVENSCLGWEGGVEEEIITRS 60
          MS+R+ S+ PK+EL++NL+  PS              + +  +SC+  E   EE   T S
Sbjct: 1  MSRRN-SNWPKLELKLNLSPPPSQASQMSLVRSPTRSNTTSPSSCVSSESNQEEMETTTS 60

Query: 61 MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDF 93
          M+LVGCP C MYVML++   +CPKC + V LDF
Sbjct: 61 MVLVGCPRCLMYVMLSQDDPKCPKCKSTVLLDF 92

[Close]

BLAST of Carg18417 vs. TAIR10
Match: AT3G11600.1 (unknown protein)

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-12
Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 1  MSKRSRSSEPKVELRVNLNRLPS-XXXXXXXXXXXXXDISVENSCLGWEGGVEEEIITRS 60
          MS+R+++  PK+ELR+NL+  PS              + +  +SC+  E   EE     S
Sbjct: 1  MSRRNKNG-PKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVSSETNQEENETITS 60

Query: 61 MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDF 93
          M+LVGCP C MYVML++   +CPKC + V LDF
Sbjct: 61 MVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDF 92

[Close]

BLAST of Carg18417 vs. TAIR10
Match: AT5G06270.1 (unknown protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.4e-08
Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = 0


Query: 57 TRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDF 93
          T SM+LVGCP C MYVML+E   +CPKC + V LDF
Sbjct: 63 TTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF 98

[Close]

BLAST of Carg18417 vs. TAIR10
Match: AT3G52561.1 (unknown protein)

HSP 1 Score: 43.9 bits (102), Expect = 7.2e-05
Identity = 20/54 (37.04%), Postives = 31/54 (57.41%), Query Frame = 0


Query: 39 SVENSCLGWEGGVEEEIITR--------SMMLVGCPGCFMYVMLTEKSSQCPKC 85
          S +NSCL     V+EE+ +          M+++GC  C MYVM+ ++  +CPKC
Sbjct: 38 SSQNSCLTRTEEVKEEVASSWVDEEEAPEMVVMGCRSCMMYVMVLQERQRCPKC 91

[Close]

BLAST of Carg18417 vs. TrEMBL
Match: tr|A0A0A0KJX5|A0A0A0KJX5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425780 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.0e-18
Identity = 49/59 (83.05%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 39  SVENSCLGWE----GGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFF 94
           SV NSCL  E    GG  EEIITRSMMLVGCPGCFMYVMLTEKSSQCPKC NNVFLDFF
Sbjct: 45  SVGNSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFF 103

[Close]

BLAST of Carg18417 vs. TrEMBL
Match: tr|A0A078F242|A0A078F242_BRANA (BnaA05g27460D protein OS=Brassica napus OX=3708 GN=BnaA05g27460D PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.9e-10
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 1  MSKRSRSSEPKVELRVNLNRLPS-XXXXXXXXXXXXXDISVENSCLGWEGGVEEEIITRS 60
          MS+R+RS  PK+EL++NL+  PS              + +  NSC+  E   EE     S
Sbjct: 1  MSRRNRSG-PKLELKLNLSPPPSQGEQMSMVRSPSRSNTASPNSCVSSEPSQEEMETPIS 60

Query: 61 MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFF 94
          M+LVGCP C MYVML++   +CPKC + V LDFF
Sbjct: 61 MVLVGCPRCLMYVMLSQDEPKCPKCKSTVLLDFF 93

[Close]

BLAST of Carg18417 vs. TrEMBL
Match: tr|A0A072U397|A0A072U397_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25499448 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.5e-09
Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 1   MSKRSRSSEPKVELRVNLNRLPSXXXXXXXXXXXXXDISVENSCLGWEGGVEEEIITRSM 60
           MS+R+  S PK++L++NL+  P               +S  +SC+  E G      T SM
Sbjct: 14  MSRRN-GSGPKLDLKLNLSP-PRVNRRMESSPTRSASVSPPSSCVSSENGSSSPEAT-SM 73

Query: 61  MLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDF 93
           +LVGCP C MYVML+E   +CPKCH+ V LDF
Sbjct: 74  LLVGCPRCLMYVMLSENDPKCPKCHSTVLLDF 102

[Close]

BLAST of Carg18417 vs. TrEMBL
Match: tr|B7FH31|B7FH31_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.5e-09
Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 1  MSKRSRSSEPKVELRVNLNRLPSXXXXXXXXXXXXXDISVENSCLGWEGGVEEEIITRSM 60
          MS+R+  S PK++L++NL+  P               +S  +SC+  E G      T SM
Sbjct: 1  MSRRN-GSGPKLDLKLNLSP-PRVNRRMESSPTRSASVSPPSSCVSSENGSSSPEAT-SM 60

Query: 61 MLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDF 93
          +LVGCP C MYVML+E   +CPKCH+ V LDF
Sbjct: 61 LLVGCPRCLMYVMLSENDPKCPKCHSTVLLDF 89

[Close]

BLAST of Carg18417 vs. TrEMBL
Match: tr|R0HZX7|R0HZX7_9BRAS (Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10014943mg PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.5e-09
Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 1  MSKRSRSSEPKVELRVNLNRLPS-XXXXXXXXXXXXXDISVENSCLGWEGGVEEEI--IT 60
          MS+R+++  PK+ELR+N++  PS              + +  +SC+  E   E+EI   T
Sbjct: 1  MSRRNKNG-PKLELRLNISPPPSQASQMSLVLSPTRSNTTSPSSCVSSETNQEDEIDTTT 60

Query: 61 RSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDF 93
           SM+LVGCP C MYVML+E   +CPKC + V LDF
Sbjct: 61 TSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF 94

The following BLAST results are available for this feature:

BLAST of Carg18417 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48041.1	1.4e-17	83.05	hypothetical protein Csa_6G425780 [Cucumis sativus]	[more]
XP_022575922.1	1.0e-09	43.62	uncharacterized protein LOC111215947 [Brassica napus] >CDY08510.1 BnaA05g27460D ...	[more]
XP_010464878.1	2.3e-09	43.16	PREDICTED: uncharacterized protein LOC104745369 [Camelina sativa]	[more]
XP_006296745.1	6.7e-09	42.11	uncharacterized protein LOC17893207 [Capsella rubella] >EOA29643.1 hypothetical ...	[more]
XP_006407430.1	6.7e-09	41.94	uncharacterized protein LOC18023255 [Eutrema salsugineum] >ESQ48883.1 hypothetic...	[more]

BLAST of Carg18417 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G11600.1	2.7e-12	40.86	unknown protein	[more]
AT5G06270.1	2.4e-08	63.89	unknown protein	[more]
AT3G52561.1	7.2e-05	37.04	unknown protein	[more]

BLAST of Carg18417 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18417 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KJX5\|A0A0A0KJX5_CUCSA	9.0e-18	83.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425780 PE=4 SV=1	[more]
tr\|A0A078F242\|A0A078F242_BRANA	6.9e-10	43.62	BnaA05g27460D protein OS=Brassica napus OX=3708 GN=BnaA05g27460D PE=4 SV=1	[more]
tr\|A0A072U397\|A0A072U397_MEDTR	4.5e-09	42.39	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25499448 PE=4 SV=1	[more]
tr\|B7FH31\|B7FH31_MEDTR	4.5e-09	42.39	Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1	[more]
tr\|R0HZX7\|R0HZX7_9BRAS	4.5e-09	42.11	Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10014943mg PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18417-RA	Carg18417-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	PANTHER	PTHR33177	FAMILY NOT NAMED	coord: 1..102
None	No IPR available	PANTHER	PTHR33177:SF11	SUBFAMILY NOT NAMED	coord: 1..102

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18417	Cla017653	Watermelon (97103) v1	carwmB0411
Carg18417	Cla008627	Watermelon (97103) v1	carwmB0413
Carg18417	Csa3G778340	Cucumber (Chinese Long) v2	carcuB0444
Carg18417	Csa6G425780	Cucumber (Chinese Long) v2	carcuB0445
Carg18417	MELO3C014511	Melon (DHL92) v3.5.1	carmeB0423
Carg18417	MELO3C009512	Melon (DHL92) v3.5.1	carmeB0422
Carg18417	ClCG10G018560	Watermelon (Charleston Gray)	carwcgB0407
Carg18417	ClCG02G022350	Watermelon (Charleston Gray)	carwcgB0409
Carg18417	CSPI03G35340	Wild cucumber (PI 183967)	carcpiB0449
Carg18417	CSPI06G23340	Wild cucumber (PI 183967)	carcpiB0450
Carg18417	Cucsa.241570	Cucumber (Gy14) v1	carcgyB0481
Carg18417	Cucsa.185820	Cucumber (Gy14) v1	carcgyB0480
Carg18417	CmaCh02G013120	Cucurbita maxima (Rimu)	carcmaB0576
Carg18417	CmaCh20G001550	Cucurbita maxima (Rimu)	carcmaB0575
Carg18417	CmoCh02G013520	Cucurbita moschata (Rifu)	carcmoB0560
Carg18417	CmoCh20G001710	Cucurbita moschata (Rifu)	carcmoB0559
Carg18417	CmoCh14G003330	Cucurbita moschata (Rifu)	carcmoB0557
Carg18417	Lsi10G011440	Bottle gourd (USVL1VR-Ls)	carlsiB375
Carg18417	Lsi03G018520	Bottle gourd (USVL1VR-Ls)	carlsiB378
Carg18417	Cp4.1LG05g04430	Cucurbita pepo (Zucchini)	carcpeB0583
Carg18417	Cp4.1LG03g00570	Cucurbita pepo (Zucchini)	carcpeB0580
Carg18417	Cp4.1LG16g08000	Cucurbita pepo (Zucchini)	carcpeB0579
Carg18417	CsGy6G022580	Cucumber (Gy14) v2	carcgybB0421
Carg18417	MELO3C014511.2	Melon (DHL92) v3.6.1	carmedB0426
Carg18417	MELO3C009512.2	Melon (DHL92) v3.6.1	carmedB0425
Carg18417	CsaV3_6G038480	Cucumber (Chinese Long) v3	carcucB0446
Carg18417	CsaV3_3G037690	Cucumber (Chinese Long) v3	carcucB0445
Carg18417	Cla97C02G048440	Watermelon (97103) v2	carwmbB0439
Carg18417	Bhi10G000135	Wax gourd	carwgoB0501

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18417	Carg03648	Silver-seed gourd	carcarB289
Carg18417	Carg02649	Silver-seed gourd	carcarB433

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18417	Watermelon (97103) v2	carwmbB0437
Carg18417	Cucurbita maxima (Rimu)	carcmaB0578
Carg18417	Cucurbita moschata (Rifu)	carcmoB0562
Carg18417	Cucurbita pepo (Zucchini)	carcpeB0582
Carg18417	Cucurbita pepo (Zucchini)	carcpeB0584