Carg18417-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18417-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	E3 ubiquitin-protein ligase
Location	Cucurbita_argyrosperma_scaffold_161 : 141933 .. 142253 (-)
Sequence length	321

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAGAGGTCGAGAAGTAGCGAGCCGAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGGTCGTCGTCGGACATATCGGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGAGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTTATGTATGTGATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAATGTCTTCCTTGATTTCTTCAAGCACCAACAGCAGCAGCAGCAGCAGCAGCATCATGCCTAG

mRNA sequence

ATGAGCAAGAGGTCGAGAAGTAGCGAGCCGAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGGTCGTCGTCGGACATATCGGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGAGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTTATGTATGTGATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAATGTCTTCCTTGATTTCTTCAAGCACCAACAGCAGCAGCAGCAGCAGCAGCATCATGCCTAG

Coding sequence (CDS)

ATGAGCAAGAGGTCGAGAAGTAGCGAGCCGAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGGTCGTCGTCGGACATATCGGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGAGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTTATGTATGTGATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAATGTCTTCCTTGATTTCTTCAAGCACCAACAGCAGCAGCAGCAGCAGCAGCATCATGCCTAG

Protein sequence

MSKRSRSSEPKVELRVNLNRLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQQQQHHA

Homology

[Close]

BLAST of Carg18417-RA vs. NCBI nr
Match: KGN48041.1 (hypothetical protein Csa_6G425780 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 49/59 (83.05%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 39  SVENSCLGWE----GGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFF 94
           SV NSCL  E    GG  EEIITRSMMLVGCPGCFMYVMLTEKSSQCPKC NNVFLDFF
Sbjct: 45  SVGNSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFF 103

[Close]

BLAST of Carg18417-RA vs. NCBI nr
Match: XP_022575922.1 (uncharacterized protein LOC111215947 [Brassica napus] >CDY08510.1 BnaA05g27460D [Brassica napus])

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 1  MSKRSRSSEPKVELRVNLNRLPS-XXXXXXXXXXXXXDISVENSCLGWEGGVEEEIITRS 60
          MS+R+RS  PK+EL++NL+  PS              + +  NSC+  E   EE     S
Sbjct: 1  MSRRNRSG-PKLELKLNLSPPPSQGEQMSMVRSPSRSNTASPNSCVSSEPSQEEMETPIS 60

Query: 61 MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFF 94
          M+LVGCP C MYVML++   +CPKC + V LDFF
Sbjct: 61 MVLVGCPRCLMYVMLSQDEPKCPKCKSTVLLDFF 93

[Close]

BLAST of Carg18417-RA vs. NCBI nr
Match: XP_010464878.1 (PREDICTED: uncharacterized protein LOC104745369 [Camelina sativa])

HSP 1 Score: 71.2 bits (173), Expect = 2.3e-09
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 1  MSKRSRSSEPKVELRVNLNRLPSXXXXXXXXXXXXXDISVE-NSCLGWEGGVEEEI--IT 60
          MS+R+++  PK+ELR+NL+  PS               S   +SC+  E   E+EI   T
Sbjct: 1  MSRRNKNG-PKIELRLNLSPPPSQASQMSLVRSPTRSNSTSPSSCVSSETNQEDEIDTTT 60

Query: 61 RSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDF 93
           SM+LVGCP C MYVML++   +CPKC + V LDF
Sbjct: 61 TSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDF 94

[Close]

BLAST of Carg18417-RA vs. NCBI nr
Match: XP_006296745.1 (uncharacterized protein LOC17893207 [Capsella rubella] >EOA29643.1 hypothetical protein CARUB_v10014943mg [Capsella rubella])

HSP 1 Score: 69.7 bits (169), Expect = 6.7e-09
Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 1  MSKRSRSSEPKVELRVNLNRLPS-XXXXXXXXXXXXXDISVENSCLGWEGGVEEEI--IT 60
          MS+R+++  PK+ELR+N++  PS              + +  +SC+  E   E+EI   T
Sbjct: 1  MSRRNKNG-PKLELRLNISPPPSQASQMSLVLSPTRSNTTSPSSCVSSETNQEDEIDTTT 60

Query: 61 RSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDF 93
           SM+LVGCP C MYVML+E   +CPKC + V LDF
Sbjct: 61 TSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF 94

[Close]

BLAST of Carg18417-RA vs. NCBI nr
Match: XP_006407430.1 (uncharacterized protein LOC18023255 [Eutrema salsugineum] >ESQ48883.1 hypothetical protein EUTSA_v10021790mg [Eutrema salsugineum])

HSP 1 Score: 69.7 bits (169), Expect = 6.7e-09
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 1  MSKRSRSSEPKVELRVNLNRLPS-XXXXXXXXXXXXXDISVENSCLGWEGGVEEEIITRS 60
          MS+R+ S+ PK+EL++NL+  PS              + +  +SC+  E   EE   T S
Sbjct: 1  MSRRN-SNWPKLELKLNLSPPPSQASQMSLVRSPTRSNTTSPSSCVSSESNQEEMETTTS 60

Query: 61 MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDF 93
          M+LVGCP C MYVML++   +CPKC + V LDF
Sbjct: 61 MVLVGCPRCLMYVMLSQDDPKCPKCKSTVLLDF 92

[Close]

BLAST of Carg18417-RA vs. TAIR10
Match: AT3G11600.1 (unknown protein)

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-12
Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 1  MSKRSRSSEPKVELRVNLNRLPS-XXXXXXXXXXXXXDISVENSCLGWEGGVEEEIITRS 60
          MS+R+++  PK+ELR+NL+  PS              + +  +SC+  E   EE     S
Sbjct: 1  MSRRNKNG-PKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVSSETNQEENETITS 60

Query: 61 MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDF 93
          M+LVGCP C MYVML++   +CPKC + V LDF
Sbjct: 61 MVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDF 92

[Close]

BLAST of Carg18417-RA vs. TAIR10
Match: AT5G06270.1 (unknown protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.4e-08
Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = 0


Query: 57 TRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDF 93
          T SM+LVGCP C MYVML+E   +CPKC + V LDF
Sbjct: 63 TTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF 98

[Close]

BLAST of Carg18417-RA vs. TAIR10
Match: AT3G52561.1 (unknown protein)

HSP 1 Score: 43.9 bits (102), Expect = 7.2e-05
Identity = 20/54 (37.04%), Postives = 31/54 (57.41%), Query Frame = 0


Query: 39 SVENSCLGWEGGVEEEIITR--------SMMLVGCPGCFMYVMLTEKSSQCPKC 85
          S +NSCL     V+EE+ +          M+++GC  C MYVM+ ++  +CPKC
Sbjct: 38 SSQNSCLTRTEEVKEEVASSWVDEEEAPEMVVMGCRSCMMYVMVLQERQRCPKC 91

[Close]

BLAST of Carg18417-RA vs. TrEMBL
Match: tr|A0A0A0KJX5|A0A0A0KJX5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425780 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.0e-18
Identity = 49/59 (83.05%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 39  SVENSCLGWE----GGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFF 94
           SV NSCL  E    GG  EEIITRSMMLVGCPGCFMYVMLTEKSSQCPKC NNVFLDFF
Sbjct: 45  SVGNSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFF 103

[Close]

BLAST of Carg18417-RA vs. TrEMBL
Match: tr|A0A078F242|A0A078F242_BRANA (BnaA05g27460D protein OS=Brassica napus OX=3708 GN=BnaA05g27460D PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.9e-10
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 1  MSKRSRSSEPKVELRVNLNRLPS-XXXXXXXXXXXXXDISVENSCLGWEGGVEEEIITRS 60
          MS+R+RS  PK+EL++NL+  PS              + +  NSC+  E   EE     S
Sbjct: 1  MSRRNRSG-PKLELKLNLSPPPSQGEQMSMVRSPSRSNTASPNSCVSSEPSQEEMETPIS 60

Query: 61 MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFF 94
          M+LVGCP C MYVML++   +CPKC + V LDFF
Sbjct: 61 MVLVGCPRCLMYVMLSQDEPKCPKCKSTVLLDFF 93

[Close]

BLAST of Carg18417-RA vs. TrEMBL
Match: tr|A0A072U397|A0A072U397_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25499448 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.5e-09
Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 1   MSKRSRSSEPKVELRVNLNRLPSXXXXXXXXXXXXXDISVENSCLGWEGGVEEEIITRSM 60
           MS+R+  S PK++L++NL+  P               +S  +SC+  E G      T SM
Sbjct: 14  MSRRN-GSGPKLDLKLNLSP-PRVNRRMESSPTRSASVSPPSSCVSSENGSSSPEAT-SM 73

Query: 61  MLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDF 93
           +LVGCP C MYVML+E   +CPKCH+ V LDF
Sbjct: 74  LLVGCPRCLMYVMLSENDPKCPKCHSTVLLDF 102

[Close]

BLAST of Carg18417-RA vs. TrEMBL
Match: tr|B7FH31|B7FH31_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.5e-09
Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 1  MSKRSRSSEPKVELRVNLNRLPSXXXXXXXXXXXXXDISVENSCLGWEGGVEEEIITRSM 60
          MS+R+  S PK++L++NL+  P               +S  +SC+  E G      T SM
Sbjct: 1  MSRRN-GSGPKLDLKLNLSP-PRVNRRMESSPTRSASVSPPSSCVSSENGSSSPEAT-SM 60

Query: 61 MLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDF 93
          +LVGCP C MYVML+E   +CPKCH+ V LDF
Sbjct: 61 LLVGCPRCLMYVMLSENDPKCPKCHSTVLLDF 89

[Close]

BLAST of Carg18417-RA vs. TrEMBL
Match: tr|R0HZX7|R0HZX7_9BRAS (Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10014943mg PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.5e-09
Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 1  MSKRSRSSEPKVELRVNLNRLPS-XXXXXXXXXXXXXDISVENSCLGWEGGVEEEI--IT 60
          MS+R+++  PK+ELR+N++  PS              + +  +SC+  E   E+EI   T
Sbjct: 1  MSRRNKNG-PKLELRLNISPPPSQASQMSLVLSPTRSNTTSPSSCVSSETNQEDEIDTTT 60

Query: 61 RSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDF 93
           SM+LVGCP C MYVML+E   +CPKC + V LDF
Sbjct: 61 TSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF 94

The following BLAST results are available for this feature:

BLAST of Carg18417-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48041.1	1.4e-17	83.05	hypothetical protein Csa_6G425780 [Cucumis sativus]	[more]
XP_022575922.1	1.0e-09	43.62	uncharacterized protein LOC111215947 [Brassica napus] >CDY08510.1 BnaA05g27460D ...	[more]
XP_010464878.1	2.3e-09	43.16	PREDICTED: uncharacterized protein LOC104745369 [Camelina sativa]	[more]
XP_006296745.1	6.7e-09	42.11	uncharacterized protein LOC17893207 [Capsella rubella] >EOA29643.1 hypothetical ...	[more]
XP_006407430.1	6.7e-09	41.94	uncharacterized protein LOC18023255 [Eutrema salsugineum] >ESQ48883.1 hypothetic...	[more]

BLAST of Carg18417-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G11600.1	2.7e-12	40.86	unknown protein	[more]
AT5G06270.1	2.4e-08	63.89	unknown protein	[more]
AT3G52561.1	7.2e-05	37.04	unknown protein	[more]

BLAST of Carg18417-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18417-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KJX5\|A0A0A0KJX5_CUCSA	9.0e-18	83.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425780 PE=4 SV=1	[more]
tr\|A0A078F242\|A0A078F242_BRANA	6.9e-10	43.62	BnaA05g27460D protein OS=Brassica napus OX=3708 GN=BnaA05g27460D PE=4 SV=1	[more]
tr\|A0A072U397\|A0A072U397_MEDTR	4.5e-09	42.39	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25499448 PE=4 SV=1	[more]
tr\|B7FH31\|B7FH31_MEDTR	4.5e-09	42.39	Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1	[more]
tr\|R0HZX7\|R0HZX7_9BRAS	4.5e-09	42.11	Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10014943mg PE=4 S...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg18417	Carg18417	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18417-RA.CDS.1	Carg18417-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18417-RA.exon.1	Carg18417-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg18417-RA	Carg18417-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	PANTHER	PTHR33177	FAMILY NOT NAMED	coord: 1..102
None	No IPR available	PANTHER	PTHR33177:SF11	SUBFAMILY NOT NAMED	coord: 1..102