Cp4.1LG05g04430 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g04430
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Gb\|AAF02129.1
Location	Cp4.1LG05 : 2555104 .. 2555424 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAGAGACCGAGAAGTAGCGAGATCGAGGTCGCCTTGAGAGTGGACATGAACCGCTCGCCAACGACCTCGTCGATGAGCATGTTTGGAGGATCAGAGTCGGGATCGGGATCGGATGTGTCGGTGGAGAGTTCTTGCTTGTCGTTGTGGGATGGGGAAGTGGAGGAGGACGAGATGATAGTAACGAGATCGATGATGCTTGTCGGGTGTCCGGGGTGCTTCATGTACGTGATGCTGACCGACAAGAGCTCCCAATGTCCCAAATGCAAGAACAATGTGTTTCTTGATTTCTTCAACCAACAAAAACATCATGCCTAG

mRNA sequence

ATGAGCAAGAGACCGAGAAGTAGCGAGATCGAGGTCGCCTTGAGAGTGGACATGAACCGCTCGCCAACGACCTCGTCGATGAGCATGTTTGGAGGATCAGAGTCGGGATCGGGATCGGATGTGTCGGTGGAGAGTTCTTGCTTGTCGTTGTGGGATGGGGAAGTGGAGGAGGACGAGATGATAGTAACGAGATCGATGATGCTTGTCGGGTGTCCGGGGTGCTTCATGTACGTGATGCTGACCGACAAGAGCTCCCAATGTCCCAAATGCAAGAACAATGTGTTTCTTGATTTCTTCAACCAACAAAAACATCATGCCTAG

Coding sequence (CDS)

ATGAGCAAGAGACCGAGAAGTAGCGAGATCGAGGTCGCCTTGAGAGTGGACATGAACCGCTCGCCAACGACCTCGTCGATGAGCATGTTTGGAGGATCAGAGTCGGGATCGGGATCGGATGTGTCGGTGGAGAGTTCTTGCTTGTCGTTGTGGGATGGGGAAGTGGAGGAGGACGAGATGATAGTAACGAGATCGATGATGCTTGTCGGGTGTCCGGGGTGCTTCATGTACGTGATGCTGACCGACAAGAGCTCCCAATGTCCCAAATGCAAGAACAATGTGTTTCTTGATTTCTTCAACCAACAAAAACATCATGCCTAG

Protein sequence

MSKRPRSSEIEVALRVDMNRSPTTSSMSMFGGSESGSGSDVSVESSCLSLWDGEVEEDEMIVTRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFNQQKHHA

Homology

[Close]

BLAST of Cp4.1LG05g04430 vs. TrEMBL
Match: A0A0A0KJX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425780 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-29
Identity = 79/112 (70.54%), Postives = 89/112 (79.46%), Query Frame = 1


Query: 1   MSKRPRSSEIEVALRVDMNRSPT----TSSMSMFGGSESGSGSDVSVESSCLSLWDGEVE 60
           MSKR RSSE EV LRV++NRSPT    +SS+S F GS SGS S++SV +SCLS  +GE  
Sbjct: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGS-SEISVGNSCLSC-EGEEH 60

Query: 61  ED--EMIVTRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFNQQKHHA 107
               E I+TRSMMLVGCPGCFMYVMLT+KSSQCPKCKNNVFLDFF QQ HHA
Sbjct: 61  GGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA 110

[Close]

BLAST of Cp4.1LG05g04430 vs. TrEMBL
Match: A0A0L9V640_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g133300 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-12
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 1


Query: 1   MSKRPRSSEIEVALRVDMNRSPTTSSMSMFGGSESGSGSDVSV---ESSCLSLWDGEVEE 60
           MSKR RS  +EV+L +   R+ ++ S S      S + S VSV   ESSC+S    E EE
Sbjct: 1   MSKRARSPRLEVSLNLSPPRAASSVSSSDLSSDSSSTSSQVSVQSLESSCVSC---EAEE 60

Query: 61  DEMIVTRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFNQQKHH 106
                TR+M+LVGCP C MYVML++   +CPKCK+ V LDF N ++++
Sbjct: 61  -----TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENN 100

[Close]

BLAST of Cp4.1LG05g04430 vs. TrEMBL
Match: A0A0S3SBW0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G159200 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-12
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 1


Query: 1   MSKRPRSSEIEVALRVDMNRSPTTSSMSMFGGSESGSGSDVSV---ESSCLSLWDGEVEE 60
           MSKR RS  +EV+L +   R+ ++ S S      S + S VSV   ESSC+S    E EE
Sbjct: 1   MSKRARSPRLEVSLNLSPPRAASSVSSSDLSSDSSSTSSQVSVQSLESSCVSC---EAEE 60

Query: 61  DEMIVTRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFNQQKHH 106
                TR+M+LVGCP C MYVML++   +CPKCK+ V LDF N ++++
Sbjct: 61  -----TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENN 100

[Close]

BLAST of Cp4.1LG05g04430 vs. TrEMBL
Match: V7AGR8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G097300g PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.0e-12
Identity = 51/109 (46.79%), Postives = 65/109 (59.63%), Query Frame = 1


Query: 1   MSKRPRSSEIEVALRVDMNRSPTTSSMSMFGGSESGSGSDVSVESSCLSLWDGEVEEDEM 60
           M KR RS  +EV L +   R+P +SS      S S   S  S+ESSC+S    EVEE   
Sbjct: 1   MKKRARSPRLEVRLSLSPPRTPVSSSDPSSESSTSSQVSVQSLESSCVSC---EVEE--- 60

Query: 61  IVTRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFF----NQQKHH 106
             TR+M+LVGCP C MYVML++   +CPKCK+ V LDF     N +K+H
Sbjct: 61  --TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLKNKENSKKNH 101

[Close]

BLAST of Cp4.1LG05g04430 vs. TrEMBL
Match: I1LKN5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G180600 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.9e-12
Identity = 51/110 (46.36%), Postives = 67/110 (60.91%), Query Frame = 1


Query: 1   MSKRPRSSEIEVALRVDMNRSPTTS--SMSMFGGSESGSGSDVSV---ESSCLSLWDGEV 60
           MSKR RS  +E+ L +   R+  TS  S S    +ES   S VSV   ESSC+S    E 
Sbjct: 1   MSKRVRSPRLELRLNLSPPRAAATSIISSSELSPTESSMSSPVSVQSLESSCVS---SEA 60

Query: 61  EEDEMIVTRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFNQQKHH 106
           EE     TR+M+LVGCP C MYVML++   +CPKCK+ V LDF N ++++
Sbjct: 61  EE-----TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENN 102

[Close]

BLAST of Cp4.1LG05g04430 vs. TAIR10
Match: AT5G06270.1 (AT5G06270.1 unknown protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-11
Identity = 43/102 (42.16%), Postives = 57/102 (55.88%), Query Frame = 1


Query: 14  LRVDMNRSPTTSSMSMF--GGSESGSGSDVSVESSCLSLWDGEVEEDEMIV-------TR 73
           L + +N SP TSS        S S + S  S  SSC+S    E+ +DE  V       T 
Sbjct: 8   LELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVS---SEMNQDEPSVRYSTSPETT 67

Query: 74  SMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFNQQKHHA 107
           SM+LVGCP C MYVML++   +CPKCK+ V LDF ++   +A
Sbjct: 68  SMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNA 106

[Close]

BLAST of Cp4.1LG05g04430 vs. TAIR10
Match: AT3G11600.1 (AT3G11600.1 unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.3e-11
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = 1


Query: 1   MSKRPRSSEIEVALRVDMNRSPTTSSMSMFGGSESGSGSDVSVESSCLSLWDGEVEEDEM 60
           MS+R ++      L + +N SP  S  S      S + S+ +  SSC+S    E  ++E 
Sbjct: 1   MSRRNKNGP---KLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVS---SETNQEEN 60

Query: 61  IVTRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFNQ 102
               SM+LVGCP C MYVML+D   +CPKCK+ V LDF  +
Sbjct: 61  ETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQE 95

[Close]

BLAST of Cp4.1LG05g04430 vs. NCBI nr
Match: gi|700192837|gb|KGN48041.1| (hypothetical protein Csa_6G425780 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.8e-29
Identity = 79/112 (70.54%), Postives = 89/112 (79.46%), Query Frame = 1


Query: 1   MSKRPRSSEIEVALRVDMNRSPT----TSSMSMFGGSESGSGSDVSVESSCLSLWDGEVE 60
           MSKR RSSE EV LRV++NRSPT    +SS+S F GS SGS S++SV +SCLS  +GE  
Sbjct: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGS-SEISVGNSCLSC-EGEEH 60

Query: 61  ED--EMIVTRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFNQQKHHA 107
               E I+TRSMMLVGCPGCFMYVMLT+KSSQCPKCKNNVFLDFF QQ HHA
Sbjct: 61  GGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA 110

[Close]

BLAST of Cp4.1LG05g04430 vs. NCBI nr
Match: gi|950938770|ref|XP_014523618.1| (PREDICTED: uncharacterized protein LOC106779913 [Vigna radiata var. radiata])

HSP 1 Score: 81.6 bits (200), Expect = 8.8e-13
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 1


Query: 1   MSKRPRSSEIEVALRVDMNRSPTTSSMSMFGGSESGSGSDVSV---ESSCLSLWDGEVEE 60
           MSKR RS  +EV+L +   R+ ++ S S      S S S VSV   ESSC+S    E EE
Sbjct: 1   MSKRARSPRLEVSLNLSPPRAASSVSSSDLSSDSSSSSSQVSVQSLESSCVSC---EAEE 60

Query: 61  DEMIVTRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFNQQKHH 106
                TR+M+LVGCP C MYVML++   +CPKCK+ V LDF N ++++
Sbjct: 61  -----TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENN 100

[Close]

BLAST of Cp4.1LG05g04430 vs. NCBI nr
Match: gi|920708509|gb|KOM50506.1| (hypothetical protein LR48_Vigan08g133300 [Vigna angularis])

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-12
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 1


Query: 1   MSKRPRSSEIEVALRVDMNRSPTTSSMSMFGGSESGSGSDVSV---ESSCLSLWDGEVEE 60
           MSKR RS  +EV+L +   R+ ++ S S      S + S VSV   ESSC+S    E EE
Sbjct: 1   MSKRARSPRLEVSLNLSPPRAASSVSSSDLSSDSSSTSSQVSVQSLESSCVSC---EAEE 60

Query: 61  DEMIVTRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFNQQKHH 106
                TR+M+LVGCP C MYVML++   +CPKCK+ V LDF N ++++
Sbjct: 61  -----TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENN 100

[Close]

BLAST of Cp4.1LG05g04430 vs. NCBI nr
Match: gi|593206576|ref|XP_007132476.1| (hypothetical protein PHAVU_011G097300g [Phaseolus vulgaris])

HSP 1 Score: 79.3 bits (194), Expect = 4.4e-12
Identity = 51/109 (46.79%), Postives = 65/109 (59.63%), Query Frame = 1


Query: 1   MSKRPRSSEIEVALRVDMNRSPTTSSMSMFGGSESGSGSDVSVESSCLSLWDGEVEEDEM 60
           M KR RS  +EV L +   R+P +SS      S S   S  S+ESSC+S    EVEE   
Sbjct: 1   MKKRARSPRLEVRLSLSPPRTPVSSSDPSSESSTSSQVSVQSLESSCVSC---EVEE--- 60

Query: 61  IVTRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFF----NQQKHH 106
             TR+M+LVGCP C MYVML++   +CPKCK+ V LDF     N +K+H
Sbjct: 61  --TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLKNKENSKKNH 101

[Close]

BLAST of Cp4.1LG05g04430 vs. NCBI nr
Match: gi|356539221|ref|XP_003538098.1| (PREDICTED: uncharacterized protein LOC100775986 [Glycine max])

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 51/110 (46.36%), Postives = 67/110 (60.91%), Query Frame = 1


Query: 1   MSKRPRSSEIEVALRVDMNRSPTTS--SMSMFGGSESGSGSDVSV---ESSCLSLWDGEV 60
           MSKR RS  +E+ L +   R+  TS  S S    +ES   S VSV   ESSC+S    E 
Sbjct: 1   MSKRVRSPRLELRLNLSPPRAAATSIISSSELSPTESSMSSPVSVQSLESSCVS---SEA 60

Query: 61  EEDEMIVTRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFNQQKHH 106
           EE     TR+M+LVGCP C MYVML++   +CPKCK+ V LDF N ++++
Sbjct: 61  EE-----TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENN 102

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g04430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g04430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJX5_CUCSA	1.2e-29	70.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425780 PE=4 SV=1	[more]
A0A0L9V640_PHAAN	1.4e-12	45.37	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g133300 PE=4 SV=1	[more]
A0A0S3SBW0_PHAAN	1.4e-12	45.37	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G159200 PE=...	[more]
V7AGR8_PHAVU	3.0e-12	46.79	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G097300g PE=4 SV=1	[more]
I1LKN5_SOYBN	8.9e-12	46.36	Uncharacterized protein OS=Glycine max GN=GLYMA_11G180600 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g04430 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06270.1	1.4e-11	42.16	unknown protein	[more]
AT3G11600.1	2.3e-11	39.60	unknown protein	[more]

BLAST of Cp4.1LG05g04430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192837\|gb\|KGN48041.1\|	1.8e-29	70.54	hypothetical protein Csa_6G425780 [Cucumis sativus]	[more]
gi\|950938770\|ref\|XP_014523618.1\|	8.8e-13	46.30	PREDICTED: uncharacterized protein LOC106779913 [Vigna radiata var. radiata]	[more]
gi\|920708509\|gb\|KOM50506.1\|	2.0e-12	45.37	hypothetical protein LR48_Vigan08g133300 [Vigna angularis]	[more]
gi\|593206576\|ref\|XP_007132476.1\|	4.4e-12	46.79	hypothetical protein PHAVU_011G097300g [Phaseolus vulgaris]	[more]
gi\|356539221\|ref\|XP_003538098.1\|	1.3e-11	46.36	PREDICTED: uncharacterized protein LOC100775986 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g04430.1	Cp4.1LG05g04430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33177	FAMILY NOT NAMED	coord: 7..103 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG05g04430	Cucsa.185820	Cucumber (Gy14) v1	cgycpeB0513
Cp4.1LG05g04430	CmaCh20G001550	Cucurbita maxima (Rimu)	cmacpeB586
Cp4.1LG05g04430	CmaCh02G013120	Cucurbita maxima (Rimu)	cmacpeB646
Cp4.1LG05g04430	CmoCh02G013520	Cucurbita moschata (Rifu)	cmocpeB595
Cp4.1LG05g04430	CmoCh20G001710	Cucurbita moschata (Rifu)	cmocpeB535
Cp4.1LG05g04430	Cla008627	Watermelon (97103) v1	cpewmB723
Cp4.1LG05g04430	Csa6G425780	Cucumber (Chinese Long) v2	cpecuB742
Cp4.1LG05g04430	MELO3C014511	Melon (DHL92) v3.5.1	cpemeB696
Cp4.1LG05g04430	ClCG02G022350	Watermelon (Charleston Gray)	cpewcgB644
Cp4.1LG05g04430	CSPI06G23340	Wild cucumber (PI 183967)	cpecpiB744
Cp4.1LG05g04430	Lsi10G011440	Bottle gourd (USVL1VR-Ls)	cpelsiB598
Cp4.1LG05g04430	MELO3C014511.2	Melon (DHL92) v3.6.1	cpemedB829
Cp4.1LG05g04430	CsaV3_6G038480	Cucumber (Chinese Long) v3	cpecucB0921
Cp4.1LG05g04430	Bhi10G000135	Wax gourd	cpewgoB0944
Cp4.1LG05g04430	CsGy6G022580	Cucumber (Gy14) v2	cgybcpeB845
Cp4.1LG05g04430	Carg02649	Silver-seed gourd	carcpeB1283
Cp4.1LG05g04430	Carg18417	Silver-seed gourd	carcpeB0583

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG05g04430	Cp4.1LG16g08000	Cucurbita pepo (Zucchini)	cpecpeB310
Cp4.1LG05g04430	Cp4.1LG05g04150	Cucurbita pepo (Zucchini)	cpecpeB505

The following block(s) are covering this gene:

None