Cucsa.185820 (gene) Cucumber (Gy14) v1

NameCucsa.185820
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionGb|AAF02129.1
Locationscaffold01274 : 1239808 .. 1240525 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCCTTTTTTTCTTTTtCAAATCACAAACCCTGTGCTGTGTAAGCCTCTCTCATCTCTCACATGCATTCCTACAAGTGTCAATAAGTTTTCATTATTTGTTAACTTTtGTTTTtGGTTTTTAGAAAATGAGCAAGAGATCGAGAAGTAGCGAGGCAGAGGTGGAGTTGAGAGTGAACTTGAACCGGTCACCTACGGCTTCGTCTTCGTCTTCGTCGGTGAGCACGTTTGATGGATCAGGATCGGGGTCGTCAGAGATATCAGTGGGGAATTCGTGCTTGTCATGTGAAGGAGAAGAGCATGGTGGGAGATTGGAAGAGATTATAACAAGATCAATGATGTTGGTGGGATGTCCAGGGTGTTTCATGTATGTGATGCTGACAGAAAAGAGCTCTCAATGCCCAAAATGCAAGAACAACGTGTTTCTTGATTTCTTCAAGCAACAACCACATCATGCCTAGTTACCCCAACATATCCAAATTATTATTAGTTACTATAATTAAGTACTCTTTTTCTTCTCTCTTTCTTTCTTTCTTATTTCTCATCAAATTTCTTAACTTTAATTAGTCAAGTTGTTTTTCTTTTCTTTTCTTTTTGGCATTTTGGTTGGTGTGAGATCTTATTATATATAAATTAAAATGTCGTCGACCATGAAACCTAGGATGGATTATTAACTTTTTGTATGATGAATTGGCTGAAATTTTCACTTTAATTTCTCT

mRNA sequence

ATTCCTTTTTTTCTTTTTCAAATCACAAACCCTGTGCTGTAAAATGAGCAAGAGATCGAGAAGTAGCGAGGCAGAGGTGGAGTTGAGAGTGAACTTGAACCGGTCACCTACGGCTTCGTCTTCGTCTTCGTCGGTGAGCACGTTTGATGGATCAGGATCGGGGTCGTCAGAGATATCAGTGGGGAATTCGTGCTTGTCATGTGAAGGAGAAGAGCATGGTGGGAGATTGGAAGAGATTATAACAAGATCAATGATGTTGGTGGGATGTCCAGGGTGTTTCATGTATGTGATGCTGACAGAAAAGAGCTCTCAATGCCCAAAATGCAAGAACAACGTGTTTCTTGATTTCTTCAAGCAACAACCACATCATGCCTAGTTACCCCAACATATCCAAATTATTATTAGTTACTATAATTAAGTACTCTttttcttctctctttctttctttcttatttctcatcaaatttcttaactttaattagtcaagttgtttttcttttcttttcttttTGGCATTTTGGTTGGTGTGAGATCttattatatataaattaaaatGTCGTCGACCATGAAACCTAGGATGGATTATTAACTTTTTGTATGATGAATTGGCTGAAATTTTCACTTTAATTTCTCT

Coding sequence (CDS)

ATGAGCAAGAGATCGAGAAGTAGCGAGGCAGAGGTGGAGTTGAGAGTGAACTTGAACCGGTCACCTACGGCTTCGTCTTCGTCTTCGTCGGTGAGCACGTTTGATGGATCAGGATCGGGGTCGTCAGAGATATCAGTGGGGAATTCGTGCTTGTCATGTGAAGGAGAAGAGCATGGTGGGAGATTGGAAGAGATTATAACAAGATCAATGATGTTGGTGGGATGTCCAGGGTGTTTCATGTATGTGATGCTGACAGAAAAGAGCTCTCAATGCCCAAAATGCAAGAACAACGTGTTTCTTGATTTCTTCAAGCAACAACCACATCATGCCTAG

Protein sequence

MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA*
BLAST of Cucsa.185820 vs. TrEMBL
Match: A0A0A0KJX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425780 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 4.7e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1

Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60
           MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG
Sbjct: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60

Query: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA 111
           RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA
Sbjct: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA 110

BLAST of Cucsa.185820 vs. TrEMBL
Match: A0A0S3SBW0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G159200 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-15
Identity = 52/112 (46.43%), Postives = 68/112 (60.71%), Query Frame = 1

Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGN---SCLSCEGEE 60
           MSKR+RS   EV L ++    P A+SS SS      S S SS++SV +   SC+SCE EE
Sbjct: 1   MSKRARSPRLEVSLNLS---PPRAASSVSSSDLSSDSSSTSSQVSVQSLESSCVSCEAEE 60

Query: 61  HGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHH 110
                    TR+M+LVGCP C MYVML+E   +CPKCK+ V LDF   + ++
Sbjct: 61  ---------TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENN 100

BLAST of Cucsa.185820 vs. TrEMBL
Match: A0A0L9V640_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g133300 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-15
Identity = 52/112 (46.43%), Postives = 68/112 (60.71%), Query Frame = 1

Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGN---SCLSCEGEE 60
           MSKR+RS   EV L ++    P A+SS SS      S S SS++SV +   SC+SCE EE
Sbjct: 1   MSKRARSPRLEVSLNLS---PPRAASSVSSSDLSSDSSSTSSQVSVQSLESSCVSCEAEE 60

Query: 61  HGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHH 110
                    TR+M+LVGCP C MYVML+E   +CPKCK+ V LDF   + ++
Sbjct: 61  ---------TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENN 100

BLAST of Cucsa.185820 vs. TrEMBL
Match: V7AGR8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G097300g PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.0e-15
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 1

Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60
           M KR+RS   EV L ++  R+P +SS  SS S+   + S  S  S+ +SC+SCE EE   
Sbjct: 1   MKKRARSPRLEVRLSLSPPRTPVSSSDPSSESS---TSSQVSVQSLESSCVSCEVEE--- 60

Query: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQ 107
                 TR+M+LVGCP C MYVML+E   +CPKCK+ V LDF K +
Sbjct: 61  ------TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLKNK 94

BLAST of Cucsa.185820 vs. TrEMBL
Match: A0A0B2QLW3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_006658 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 48/115 (41.74%), Postives = 72/115 (62.61%), Query Frame = 1

Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEIS------VGNSCLSCE 60
           MSKR+RS    +ELR+NL  SP  ++++S +S+ + S + SS +S      + +SC+S E
Sbjct: 1   MSKRARSPR--LELRLNL--SPPRAAATSIISSSELSSTESSTLSPVSVQSLESSCVSSE 60

Query: 61  GEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHH 110
            EE         TR+M+LVGCP C +YVML+E   +CPKCK+ V LDF   + ++
Sbjct: 61  AEE---------TRAMLLVGCPRCLLYVMLSEVDPKCPKCKSTVLLDFLNNEENN 102

BLAST of Cucsa.185820 vs. TAIR10
Match: AT3G11600.1 (AT3G11600.1 unknown protein)

HSP 1 Score: 72.0 bits (175), Expect = 2.6e-13
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 1

Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60
           MS+R+++   ++ELR+NL+  P+ +S  S V + + S + S      +SC+S E  +   
Sbjct: 1   MSRRNKNGP-KLELRLNLSPPPSQASQMSLVRSPNRSNTTSP-----SSCVSSETNQEEN 60

Query: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQ 106
              E IT SM+LVGCP C MYVML++   +CPKCK+ V LDF ++
Sbjct: 61  ---ETIT-SMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQE 95

BLAST of Cucsa.185820 vs. TAIR10
Match: AT5G06270.1 (AT5G06270.1 unknown protein)

HSP 1 Score: 67.0 bits (162), Expect = 8.3e-12
Identity = 41/106 (38.68%), Postives = 56/106 (52.83%), Query Frame = 1

Query: 8   SEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGGRLEEII- 67
           S    +L + LN SP  SS    V +   S + +S  S  +SC+S E  +    +     
Sbjct: 2   SRRSPKLELKLNLSPPTSSQRRMVRSPSRSAT-TSPTSPPSSCVSSEMNQDEPSVRYSTS 61

Query: 68  --TRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA 111
             T SM+LVGCP C MYVML+E   +CPKCK+ V LDF  +   +A
Sbjct: 62  PETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNA 106

BLAST of Cucsa.185820 vs. TAIR10
Match: AT5G22270.1 (AT5G22270.1 unknown protein)

HSP 1 Score: 50.8 bits (120), Expect = 6.2e-07
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 1

Query: 41  SSEISVGNSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLT-EKSSQCPKCKNNVF 100
           SS ++  +S   C  E  GG  E    +SM++VGCP C MY++ + E   +CP+C ++V 
Sbjct: 23  SSLLTESSSSSLCSEEAEGGGGE---AKSMVVVGCPNCIMYIITSLENDPRCPRCNSHVL 82

Query: 101 LDF 103
           LDF
Sbjct: 83  LDF 82

BLAST of Cucsa.185820 vs. TAIR10
Match: AT3G52561.1 (AT3G52561.1 unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 5.2e-06
Identity = 27/80 (33.75%), Postives = 43/80 (53.75%), Query Frame = 1

Query: 22 PTASSSSSSVST--FDGSGSGSSEISVGNSCLS----CEGEEHGGRLEEIITRSMMLVGC 81
          P+A + +S V+   F+G    S   S  NSCL+     + E     ++E     M+++GC
Sbjct: 13 PSARTVASVVANGRFEGRSPSSDTSSSQNSCLTRTEEVKEEVASSWVDEEEAPEMVVMGC 72

Query: 82 PGCFMYVMLTEKSSQCPKCK 96
            C MYVM+ ++  +CPKCK
Sbjct: 73 RSCMMYVMVLQERQRCPKCK 92

BLAST of Cucsa.185820 vs. NCBI nr
Match: gi|700192837|gb|KGN48041.1| (hypothetical protein Csa_6G425780 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 6.7e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1

Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60
           MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG
Sbjct: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60

Query: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA 111
           RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA
Sbjct: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA 110

BLAST of Cucsa.185820 vs. NCBI nr
Match: gi|950938770|ref|XP_014523618.1| (PREDICTED: uncharacterized protein LOC106779913 [Vigna radiata var. radiata])

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-15
Identity = 52/112 (46.43%), Postives = 68/112 (60.71%), Query Frame = 1

Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGN---SCLSCEGEE 60
           MSKR+RS   EV L ++    P A+SS SS      S S SS++SV +   SC+SCE EE
Sbjct: 1   MSKRARSPRLEVSLNLS---PPRAASSVSSSDLSSDSSSSSSQVSVQSLESSCVSCEAEE 60

Query: 61  HGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHH 110
                    TR+M+LVGCP C MYVML+E   +CPKCK+ V LDF   + ++
Sbjct: 61  ---------TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENN 100

BLAST of Cucsa.185820 vs. NCBI nr
Match: gi|920708509|gb|KOM50506.1| (hypothetical protein LR48_Vigan08g133300 [Vigna angularis])

HSP 1 Score: 90.5 bits (223), Expect = 2.0e-15
Identity = 52/112 (46.43%), Postives = 68/112 (60.71%), Query Frame = 1

Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGN---SCLSCEGEE 60
           MSKR+RS   EV L ++    P A+SS SS      S S SS++SV +   SC+SCE EE
Sbjct: 1   MSKRARSPRLEVSLNLS---PPRAASSVSSSDLSSDSSSTSSQVSVQSLESSCVSCEAEE 60

Query: 61  HGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHH 110
                    TR+M+LVGCP C MYVML+E   +CPKCK+ V LDF   + ++
Sbjct: 61  ---------TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENN 100

BLAST of Cucsa.185820 vs. NCBI nr
Match: gi|593206576|ref|XP_007132476.1| (hypothetical protein PHAVU_011G097300g [Phaseolus vulgaris])

HSP 1 Score: 89.0 bits (219), Expect = 5.8e-15
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 1

Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60
           M KR+RS   EV L ++  R+P +SS  SS S+   + S  S  S+ +SC+SCE EE   
Sbjct: 1   MKKRARSPRLEVRLSLSPPRTPVSSSDPSSESS---TSSQVSVQSLESSCVSCEVEE--- 60

Query: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQ 107
                 TR+M+LVGCP C MYVML+E   +CPKCK+ V LDF K +
Sbjct: 61  ------TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLKNK 94

BLAST of Cucsa.185820 vs. NCBI nr
Match: gi|571492791|ref|XP_006592350.1| (PREDICTED: uncharacterized protein LOC102667525 [Glycine max])

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-12
Identity = 48/115 (41.74%), Postives = 72/115 (62.61%), Query Frame = 1

Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEIS------VGNSCLSCE 60
           MSKR+RS    +ELR+NL  SP  ++++S +S+ + S + SS +S      + +SC+S E
Sbjct: 1   MSKRARSPR--LELRLNL--SPPRAAATSIISSSELSSTESSTLSPVSVQSLESSCVSSE 60

Query: 61  GEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHH 110
            EE         TR+M+LVGCP C +YVML+E   +CPKCK+ V LDF   + ++
Sbjct: 61  AEE---------TRAMLLVGCPRCLLYVMLSEVDPKCPKCKSTVLLDFLNNEENN 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KJX5_CUCSA4.7e-56100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425780 PE=4 SV=1[more]
A0A0S3SBW0_PHAAN1.4e-1546.43Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G159200 PE=... [more]
A0A0L9V640_PHAAN1.4e-1546.43Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g133300 PE=4 SV=1[more]
V7AGR8_PHAVU4.0e-1547.17Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G097300g PE=4 SV=1[more]
A0A0B2QLW3_GLYSO1.1e-1241.74Uncharacterized protein OS=Glycine soja GN=glysoja_006658 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G11600.12.6e-1340.95 unknown protein[more]
AT5G06270.18.3e-1238.68 unknown protein[more]
AT5G22270.16.2e-0739.68 unknown protein[more]
AT3G52561.15.2e-0633.75 unknown protein[more]
Match NameE-valueIdentityDescription
gi|700192837|gb|KGN48041.1|6.7e-56100.00hypothetical protein Csa_6G425780 [Cucumis sativus][more]
gi|950938770|ref|XP_014523618.1|1.2e-1546.43PREDICTED: uncharacterized protein LOC106779913 [Vigna radiata var. radiata][more]
gi|920708509|gb|KOM50506.1|2.0e-1546.43hypothetical protein LR48_Vigan08g133300 [Vigna angularis][more]
gi|593206576|ref|XP_007132476.1|5.8e-1547.17hypothetical protein PHAVU_011G097300g [Phaseolus vulgaris][more]
gi|571492791|ref|XP_006592350.1|1.6e-1241.74PREDICTED: uncharacterized protein LOC102667525 [Glycine max][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.185820.1Cucsa.185820.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33177FAMILY NOT NAMEDcoord: 19..103
score: 1.2

The following gene(s) are paralogous to this gene:

None