CsGy6G022580 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G022580
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	E3 ubiquitin-protein ligase
Location	Chr6 : 23008122 .. 23009023 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGACATAACTTTGAATGAAATAAATTTGCAAGGGCCCCTCTTCCTTCTTTGATTATTATTAATTAGTTTGTGTTATGCAGTTAGGTTTTGAAAAATTCACCATAAATTCCCTTCCCTTTTTAATTCCCTTTTCCCTCTCCCCTCATTTCTTCATTCCTTTTTTTTCTTTTTCAAATCACAAACCCTGTGCTGTGTAAGCCTCTCTCATCTCTCACATGCATTCCTACAAGTGTCAATAAGTTTTCATTATTTGTTAACTTTTGTTTTTGGTTTTTAGAAAATGAGCAAGAGATCGAGAAGTAGCGAGGCAGAGGTGGAGTTGAGAGTGAACTTGAACCGGTCACCTACGGCTTCGTCTTCGTCTTCGTCGGTGAGCACGTTTGATGGATCAGGATCGGGGTCGTCAGAGATATCAGTGGGGAATTCGTGCTTGTCATGTGAAGGAGAAGAGCATGGTGGGAGATTGGAAGAGATTATAACAAGATCAATGATGTTGGTGGGATGTCCAGGGTGTTTCATGTATGTGATGCTGACAGAAAAGAGCTCTCAATGCCCAAAATGCAAGAACAACGTGTTTCTTGATTTCTTCAAGCAACAACCACATCATGCCTAGTTACCCCAACATATCCAAATTATTATTAGTTACTATAATTAAGTACTCTTTTTCTTCTCTCTTTCTTTCTTTCTTATTTCTCATCAAATTTCTTAACTTTAATTAGTCAAGTTGTTTTTCTTTTCTTTTCTTTTTGGCATTTTGGTTGGTGTGAGATCTTATTATATATAAATTAAAATGTCGTCGACCATGAAACCTAGGATGGATTATTAACTTTTTGTATGATGAATTGGCTGAAATTTTCACTTTAATTTCTCTATCTGATCTTTCTCTCTCTCTCTCTCTCTC

mRNA sequence

GTGACATAACTTTGAATGAAATAAATTTGCAAGGGCCCCTCTTCCTTCTTTGATTATTATTAATTAGTTTGTGTTATGCAGTTAGGTTTTGAAAAATTCACCATAAATTCCCTTCCCTTTTTAATTCCCTTTTCCCTCTCCCCTCATTTCTTCATTCCTTTTTTTTCTTTTTCAAATCACAAACCCTGTGCTGTATGAGCAAGAGATCGAGAAGTAGCGAGGCAGAGGTGGAGTTGAGAGTGAACTTGAACCGGTCACCTACGGCTTCGTCTTCGTCTTCGTCGGTGAGCACGTTTGATGGATCAGGATCGGGGTCGTCAGAGATATCAGTGGGGAATTCGTGCTTGTCATGTGAAGGAGAAGAGCATGGTGGGAGATTGGAAGAGATTATAACAAGATCAATGATGTTGGTGGGATGTCCAGGGTGTTTCATGTATGTGATGCTGACAGAAAAGAGCTCTCAATGCCCAAAATGCAAGAACAACGTGTTTCTTGATTTCTTCAAGCAACAACCACATCATGCCTAGTTACCCCAACATATCCAAATTATTATTAGTTACTATAATTAAGTACTCTTTTTCTTCTCTCTTTCTTTCTTTCTTATTTCTCATCAAATTTCTTAACTTTAATTAGTCAAGTTGTTTTTCTTTTCTTTTCTTTTTGGCATTTTGGTTGGTGTGAGATCTTATTATATATAAATTAAAATGTCGTCGACCATGAAACCTAGGATGGATTATTAACTTTTTGTATGATGAATTGGCTGAAATTTTCACTTTAATTTCTCTATCTGATCTTTCTCTCTCTCTCTCTCTCTC

Coding sequence (CDS)

ATGAGCAAGAGATCGAGAAGTAGCGAGGCAGAGGTGGAGTTGAGAGTGAACTTGAACCGGTCACCTACGGCTTCGTCTTCGTCTTCGTCGGTGAGCACGTTTGATGGATCAGGATCGGGGTCGTCAGAGATATCAGTGGGGAATTCGTGCTTGTCATGTGAAGGAGAAGAGCATGGTGGGAGATTGGAAGAGATTATAACAAGATCAATGATGTTGGTGGGATGTCCAGGGTGTTTCATGTATGTGATGCTGACAGAAAAGAGCTCTCAATGCCCAAAATGCAAGAACAACGTGTTTCTTGATTTCTTCAAGCAACAACCACATCATGCCTAG

Protein sequence

MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA

Homology

[Close]

BLAST of CsGy6G022580 vs. NCBI nr
Match: KGN48041.1 (hypothetical protein Csa_6G425780 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 4.5e-32
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 45  SVGNSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFK 104
           SVGNSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFK
Sbjct: 45  SVGNSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFK 104

Query: 105 QQPHHA 111
           QQPHHA
Sbjct: 105 QQPHHA 110

[Close]

BLAST of CsGy6G022580 vs. NCBI nr
Match: KYP36726.1 (hypothetical protein KK1_042134, partial [Cajanus cajan])

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 45  SVGNSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFK 104
           S G S LS EGE++        T+ M LVGCP CFMYVML+E + +CPKCK+ VFL+FFK
Sbjct: 30  SEGISVLSSEGEDNVQHTNGPETKPMPLVGCPRCFMYVMLSEVNPKCPKCKSTVFLEFFK 89

Query: 105 QQ 107
            +
Sbjct: 90  DE 91

[Close]

BLAST of CsGy6G022580 vs. NCBI nr
Match: XP_017613487.1 (PREDICTED: uncharacterized protein LOC108458588 [Gossypium arboreum] >KHG14210.1 hypothetical protein F383_17358 [Gossypium arboreum])

HSP 1 Score: 70.1 bits (170), Expect = 5.4e-09
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 48  NSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDF 103
           +SC+S E E+  G   E  T SM+LVGCP C MYVML+E   +CPKCK+ V LDF
Sbjct: 40  SSCVSSEMEDDTGSCSEATTTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF 94

[Close]

BLAST of CsGy6G022580 vs. NCBI nr
Match: XP_016737864.1 (PREDICTED: uncharacterized protein LOC107947867 [Gossypium hirsutum])

HSP 1 Score: 70.1 bits (170), Expect = 5.4e-09
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 48  NSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDF 103
           +SC+S E E+  G   E  T SM+LVGCP C MYVML+E   +CPKCK+ V LDF
Sbjct: 40  SSCVSSEMEDDTGSCSEATTTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF 94

[Close]

BLAST of CsGy6G022580 vs. NCBI nr
Match: XP_018831243.1 (PREDICTED: uncharacterized protein LOC108998926 [Juglans regia])

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-08
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 45  SVGNSCLSCEGEEHGGRLE----EIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFL 104
           SV  SC+S E E+    L+        RSMMLVGCP C MYVML+E   +CPKCK+ V L
Sbjct: 40  SVEGSCVSSEPEDQPMTLQYSPSNAEPRSMMLVGCPRCLMYVMLSEADPKCPKCKSTVLL 99

Query: 105 DFFKQQ 107
           DF K++
Sbjct: 100 DFLKEE 105

[Close]

BLAST of CsGy6G022580 vs. TAIR10
Match: AT3G11600.1 (unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-09
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 52  SCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQ 106
           SC   E      E IT SM+LVGCP C MYVML++   +CPKCK+ V LDF ++
Sbjct: 43  SCVSSETNQEENETIT-SMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQE 95

[Close]

BLAST of CsGy6G022580 vs. TAIR10
Match: AT5G06270.1 (unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.9e-09
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 67  TRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA 111
           T SM+LVGCP C MYVML+E   +CPKCK+ V LDF  +   +A
Sbjct: 63  TTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNA 106

[Close]

BLAST of CsGy6G022580 vs. TAIR10
Match: AT3G52561.1 (unknown protein)

HSP 1 Score: 41.2 bits (95), Expect = 4.8e-04
Identity = 19/52 (36.54%), Postives = 30/52 (57.69%), Query Frame = 0


Query: 48 NSCLS----CEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCK 96
          NSCL+     + E     ++E     M+++GC  C MYVM+ ++  +CPKCK
Sbjct: 41 NSCLTRTEEVKEEVASSWVDEEEAPEMVVMGCRSCMMYVMVLQERQRCPKCK 92

[Close]

BLAST of CsGy6G022580 vs. TrEMBL
Match: tr|A0A0A0KJX5|A0A0A0KJX5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425780 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.0e-32
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 45  SVGNSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFK 104
           SVGNSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFK
Sbjct: 45  SVGNSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFK 104

Query: 105 QQPHHA 111
           QQPHHA
Sbjct: 105 QQPHHA 110

[Close]

BLAST of CsGy6G022580 vs. TrEMBL
Match: tr|A0A151R2G4|A0A151R2G4_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_042134 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.3e-10
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 45  SVGNSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFK 104
           S G S LS EGE++        T+ M LVGCP CFMYVML+E + +CPKCK+ VFL+FFK
Sbjct: 30  SEGISVLSSEGEDNVQHTNGPETKPMPLVGCPRCFMYVMLSEVNPKCPKCKSTVFLEFFK 89

Query: 105 QQ 107
            +
Sbjct: 90  DE 91

[Close]

BLAST of CsGy6G022580 vs. TrEMBL
Match: tr|A0A0B0NN04|A0A0B0NN04_GOSAR (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_17358 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.5e-09
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 48  NSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDF 103
           +SC+S E E+  G   E  T SM+LVGCP C MYVML+E   +CPKCK+ V LDF
Sbjct: 40  SSCVSSEMEDDTGSCSEATTTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF 94

[Close]

BLAST of CsGy6G022580 vs. TrEMBL
Match: tr|A0A1U8NJ13|A0A1U8NJ13_GOSHI (uncharacterized protein LOC107947867 OS=Gossypium hirsutum OX=3635 GN=LOC107947867 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.5e-09
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 48  NSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDF 103
           +SC+S E E+  G   E  T SM+LVGCP C MYVML+E   +CPKCK+ V LDF
Sbjct: 40  SSCVSSEMEDDTGSCSEATTTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF 94

[Close]

BLAST of CsGy6G022580 vs. TrEMBL
Match: tr|A0A2I4FHZ1|A0A2I4FHZ1_9ROSI (uncharacterized protein LOC108998943 OS=Juglans regia OX=51240 GN=LOC108998943 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 45  SVGNSCLSCEGEEHGGRLE----EIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFL 104
           SV  SC+S E E+    L+        RSMMLVGCP C MYVML+E   +CPKCK+ V L
Sbjct: 40  SVEGSCVSSEPEDQPMTLQYSPSNAEPRSMMLVGCPRCLMYVMLSEADPKCPKCKSTVLL 99

Query: 105 DFFKQQ 107
           DF K++
Sbjct: 100 DFLKEE 105

The following BLAST results are available for this feature:

BLAST of CsGy6G022580 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48041.1	4.5e-32	100.00	hypothetical protein Csa_6G425780 [Cucumis sativus]	[more]
KYP36726.1	1.4e-09	54.84	hypothetical protein KK1_042134, partial [Cajanus cajan]	[more]
XP_017613487.1	5.4e-09	56.36	PREDICTED: uncharacterized protein LOC108458588 [Gossypium arboreum] >KHG14210.1...	[more]
XP_016737864.1	5.4e-09	56.36	PREDICTED: uncharacterized protein LOC107947867 [Gossypium hirsutum]	[more]
XP_018831243.1	1.6e-08	51.52	PREDICTED: uncharacterized protein LOC108998926 [Juglans regia]	[more]

BLAST of CsGy6G022580 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G11600.1	1.0e-09	51.85	unknown protein	[more]
AT5G06270.1	2.9e-09	56.82	unknown protein	[more]
AT3G52561.1	4.8e-04	36.54	unknown protein	[more]

BLAST of CsGy6G022580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G022580 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KJX5\|A0A0A0KJX5_CUCSA	3.0e-32	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425780 PE=4 SV=1	[more]
tr\|A0A151R2G4\|A0A151R2G4_CAJCA	9.3e-10	54.84	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_042134 PE=4 S...	[more]
tr\|A0A0B0NN04\|A0A0B0NN04_GOSAR	3.5e-09	56.36	Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_17358 PE=4 SV=1	[more]
tr\|A0A1U8NJ13\|A0A1U8NJ13_GOSHI	3.5e-09	56.36	uncharacterized protein LOC107947867 OS=Gossypium hirsutum OX=3635 GN=LOC1079478...	[more]
tr\|A0A2I4FHZ1\|A0A2I4FHZ1_9ROSI	1.0e-08	51.52	uncharacterized protein LOC108998943 OS=Juglans regia OX=51240 GN=LOC108998943 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G022580.1	CsGy6G022580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..49
None	No IPR available	PANTHER	PTHR33177:SF11	SUBFAMILY NOT NAMED	coord: 1..107
None	No IPR available	PANTHER	PTHR33177	FAMILY NOT NAMED	coord: 1..107

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G022580	Cla008627	Watermelon (97103) v1	cgybwmB480
CsGy6G022580	Csa6G425780	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G022580	MELO3C014511	Melon (DHL92) v3.5.1	cgybmeB432
CsGy6G022580	ClCG02G022350	Watermelon (Charleston Gray)	cgybwcgB403
CsGy6G022580	CSPI06G23340	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G022580	CmaCh20G001550	Cucurbita maxima (Rimu)	cgybcmaB799
CsGy6G022580	CmaCh02G013120	Cucurbita maxima (Rimu)	cgybcmaB819
CsGy6G022580	CmoCh02G013520	Cucurbita moschata (Rifu)	cgybcmoB798
CsGy6G022580	CmoCh20G001710	Cucurbita moschata (Rifu)	cgybcmoB777
CsGy6G022580	Lsi10G011440	Bottle gourd (USVL1VR-Ls)	cgyblsiB379
CsGy6G022580	Cp4.1LG05g04430	Cucurbita pepo (Zucchini)	cgybcpeB845
CsGy6G022580	Cp4.1LG16g08000	Cucurbita pepo (Zucchini)	cgybcpeB755
CsGy6G022580	MELO3C014511.2	Melon (DHL92) v3.6.1	cgybmedB427
CsGy6G022580	CsaV3_6G038480	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G022580	CsaV3_3G037690	Cucumber (Chinese Long) v3	cgybcucB272
CsGy6G022580	Cla97C02G048440	Watermelon (97103) v2	cgybwmbB408
CsGy6G022580	Bhi10G000135	Wax gourd	cgybwgoB568
CsGy6G022580	Carg02649	Silver-seed gourd	carcgybB0914
CsGy6G022580	Carg18417	Silver-seed gourd	carcgybB0421
CsGy6G022580	Carg03648	Silver-seed gourd	carcgybB0267

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G022580	Cucumber (Gy14) v2	cgybcgybB106
CsGy6G022580	Cucurbita maxima (Rimu)	cgybcmaB732
CsGy6G022580	Cucurbita maxima (Rimu)	cgybcmaB856
CsGy6G022580	Cucurbita moschata (Rifu)	cgybcmoB837
CsGy6G022580	Cucurbita pepo (Zucchini)	cgybcpeB832
CsGy6G022580	Cucurbita pepo (Zucchini)	cgybcpeB861
CsGy6G022580	Cucurbita pepo (Zucchini)	cgybcpeB892
CsGy6G022580	Cucumber (Chinese Long) v2	cgybcuB260
CsGy6G022580	Bottle gourd (USVL1VR-Ls)	cgyblsiB414
CsGy6G022580	Melon (DHL92) v3.5.1	cgybmeB428
CsGy6G022580	Watermelon (Charleston Gray)	cgybwcgB395
CsGy6G022580	Watermelon (97103) v1	cgybwmB425
CsGy6G022580	Wild cucumber (PI 183967)	cgybcpiB267