CmoCh20G001710.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G001710.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Gb:AAF02129.1, putative
Location	Cmo_Chr20 : 863095 .. 863409 (-)
Sequence length	315

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAGAGGTCGAGAAGTAGCGAGCCAAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGGTCGTCATCGGACATATCGGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGCGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTCATGTATGTGATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAACGTCTTCCTTGATTTCTTCAAGCACCAGCAGCAGCAGCAGCAGCATCATGCCTAG

mRNA sequence

ATGAGCAAGAGGTCGAGAAGTAGCGAGCCAAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGGTCGTCATCGGACATATCGGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGCGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTCATGTATGTGATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAACGTCTTCCTTGATTTCTTCAAGCACCAGCAGCAGCAGCAGCAGCATCATGCCTAG

Coding sequence (CDS)

ATGAGCAAGAGGTCGAGAAGTAGCGAGCCAAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGGTCGTCATCGGACATATCGGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGCGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTCATGTATGTGATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAACGTCTTCCTTGATTTCTTCAAGCACCAGCAGCAGCAGCAGCAGCATCATGCCTAG

Homology

[Close]

BLAST of CmoCh20G001710.1 vs. TrEMBL
Match: A0A0A0KJX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425780 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-30
Identity = 84/114 (73.68%), Postives = 89/114 (78.07%), Query Frame = 1


Query: 1   MSKRSRSSEPKVELRVNLNRLPSPATSSLS-----GSGS-SSDISVENSCLGWEG----G 60
           MSKRSRSSE +VELRVNLNR P+ ++SS S     GSGS SS+ISV NSCL  EG    G
Sbjct: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60

Query: 61  VEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQQHHA 105
             EEIITRSMMLVGCPGCFMYVMLTEKSSQCPKC NNVFLDFFK    QQ HHA
Sbjct: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFK----QQPHHA 110

[Close]

BLAST of CmoCh20G001710.1 vs. TrEMBL
Match: V7AGR8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G097300g PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.7e-12
Identity = 50/108 (46.30%), Postives = 74/108 (68.52%), Query Frame = 1


Query: 1   MSKRSRSSEPKVELRVNLNRLPSPATSS--LSGSGSSSDISV---ENSCLGWEGGVEEEI 60
           M KR+RS  P++E+R++L+   +P +SS   S S +SS +SV   E+SC+  E  VEE  
Sbjct: 1   MKKRARS--PRLEVRLSLSPPRTPVSSSDPSSESSTSSQVSVQSLESSCVSCE--VEE-- 60

Query: 61  ITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQQHH 104
            TR+M+LVGCP C MYVML+E   +CPKC + V LDF K+++  +++H
Sbjct: 61  -TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLKNKENSKKNH 101

[Close]

BLAST of CmoCh20G001710.1 vs. TrEMBL
Match: M4F180_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-11
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 1


Query: 1  MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEIITRS 60
          MS+R+RS  PK+EL++NL+  PS     S+  S S S+ +  NSC+  E   EE     S
Sbjct: 1  MSRRNRSG-PKLELKLNLSPSPSQGEQMSMVRSPSRSNTASPNSCVSSEPSQEEMETPIS 60

Query: 61 MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFF 94
          M+LVGCP C MYVML++   +CPKC + V LDFF
Sbjct: 61 MVLVGCPRCLMYVMLSQDEPKCPKCKSTVLLDFF 93

[Close]

BLAST of CmoCh20G001710.1 vs. TrEMBL
Match: A0A078F242_BRANA (BnaA05g27460D protein OS=Brassica napus GN=BnaA05g27460D PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-11
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 1


Query: 1  MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEIITRS 60
          MS+R+RS  PK+EL++NL+  PS     S+  S S S+ +  NSC+  E   EE     S
Sbjct: 1  MSRRNRSG-PKLELKLNLSPPPSQGEQMSMVRSPSRSNTASPNSCVSSEPSQEEMETPIS 60

Query: 61 MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFF 94
          M+LVGCP C MYVML++   +CPKC + V LDFF
Sbjct: 61 MVLVGCPRCLMYVMLSQDEPKCPKCKSTVLLDFF 93

[Close]

BLAST of CmoCh20G001710.1 vs. TrEMBL
Match: V4M909_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021790mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.3e-11
Identity = 46/97 (47.42%), Postives = 64/97 (65.98%), Query Frame = 1


Query: 1  MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEIITRS 60
          MS+R+ S+ PK+EL++NL+  PS A+  SL  S + S+ +  +SC+  E   EE   T S
Sbjct: 1  MSRRN-SNWPKLELKLNLSPPPSQASQMSLVRSPTRSNTTSPSSCVSSESNQEEMETTTS 60

Query: 61 MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQ 97
          M+LVGCP C MYVML++   +CPKC + V LDF  HQ
Sbjct: 61 MVLVGCPRCLMYVMLSQDDPKCPKCKSTVLLDFL-HQ 95

[Close]

BLAST of CmoCh20G001710.1 vs. TAIR10
Match: AT3G11600.1 (AT3G11600.1 unknown protein)

HSP 1 Score: 75.1 bits (183), Expect = 2.9e-14
Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = 1


Query: 1  MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEIITRS 60
          MS+R+++  PK+ELR+NL+  PS A+  SL  S + S+ +  +SC+  E   EE     S
Sbjct: 1  MSRRNKNG-PKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVSSETNQEENETITS 60

Query: 61 MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFK 95
          M+LVGCP C MYVML++   +CPKC + V LDF +
Sbjct: 61 MVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQ 94

[Close]

BLAST of CmoCh20G001710.1 vs. TAIR10
Match: AT5G06270.1 (AT5G06270.1 unknown protein)

HSP 1 Score: 67.0 bits (162), Expect = 7.8e-12
Identity = 46/106 (43.40%), Postives = 60/106 (56.60%), Query Frame = 1


Query: 1  MSKRSRSSEPKVELRVNLNRLPSPATSSL-------SGSGSSSDISVENSCLGWEGGVEE 60
          MS+RS    PK+EL++NL    SP TSS        S S ++S  S  +SC+  E   +E
Sbjct: 1  MSRRS----PKLELKLNL----SPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDE 60

Query: 61 EII-------TRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDF 93
            +       T SM+LVGCP C MYVML+E   +CPKC + V LDF
Sbjct: 61 PSVRYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF 98

[Close]

BLAST of CmoCh20G001710.1 vs. TAIR10
Match: AT5G22270.1 (AT5G22270.1 unknown protein)

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-07
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 14 LRVNLNRLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVM 73
          L + LN  PS  +S L+ S SSS  S E      EGG  E    +SM++VGCP C MY++
Sbjct: 11 LDLKLNISPSLDSSLLTESSSSSLCSEEA-----EGGGGE---AKSMVVVGCPNCIMYII 70

Query: 74 LT-EKSSQCPKCHNNVFLDF 93
           + E   +CP+C+++V LDF
Sbjct: 71 TSLENDPRCPRCNSHVLLDF 82

[Close]

BLAST of CmoCh20G001710.1 vs. NCBI nr
Match: gi|700192837|gb|KGN48041.1| (hypothetical protein Csa_6G425780 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 2.7e-30
Identity = 84/114 (73.68%), Postives = 89/114 (78.07%), Query Frame = 1


Query: 1   MSKRSRSSEPKVELRVNLNRLPSPATSSLS-----GSGS-SSDISVENSCLGWEG----G 60
           MSKRSRSSE +VELRVNLNR P+ ++SS S     GSGS SS+ISV NSCL  EG    G
Sbjct: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60

Query: 61  VEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQQHHA 105
             EEIITRSMMLVGCPGCFMYVMLTEKSSQCPKC NNVFLDFFK    QQ HHA
Sbjct: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFK----QQPHHA 110

[Close]

BLAST of CmoCh20G001710.1 vs. NCBI nr
Match: gi|727583833|ref|XP_010464878.1| (PREDICTED: uncharacterized protein LOC104745369 [Camelina sativa])

HSP 1 Score: 79.7 bits (195), Expect = 3.3e-12
Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = 1


Query: 1  MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEI--IT 60
          MS+R+++  PK+ELR+NL+  PS A+  SL  S + S+ +  +SC+  E   E+EI   T
Sbjct: 1  MSRRNKNG-PKIELRLNLSPPPSQASQMSLVRSPTRSNSTSPSSCVSSETNQEDEIDTTT 60

Query: 61 RSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQ 97
           SM+LVGCP C MYVML++   +CPKC + V LDF  HQ
Sbjct: 61 TSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLHHQ 98

[Close]

BLAST of CmoCh20G001710.1 vs. NCBI nr
Match: gi|593206576|ref|XP_007132476.1| (hypothetical protein PHAVU_011G097300g [Phaseolus vulgaris])

HSP 1 Score: 78.2 bits (191), Expect = 9.6e-12
Identity = 50/108 (46.30%), Postives = 74/108 (68.52%), Query Frame = 1


Query: 1   MSKRSRSSEPKVELRVNLNRLPSPATSS--LSGSGSSSDISV---ENSCLGWEGGVEEEI 60
           M KR+RS  P++E+R++L+   +P +SS   S S +SS +SV   E+SC+  E  VEE  
Sbjct: 1   MKKRARS--PRLEVRLSLSPPRTPVSSSDPSSESSTSSQVSVQSLESSCVSCE--VEE-- 60

Query: 61  ITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQQHH 104
            TR+M+LVGCP C MYVML+E   +CPKC + V LDF K+++  +++H
Sbjct: 61  -TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLKNKENSKKNH 101

[Close]

BLAST of CmoCh20G001710.1 vs. NCBI nr
Match: gi|727412775|ref|XP_010497482.1| (PREDICTED: uncharacterized protein LOC104774622 [Camelina sativa])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 1


Query: 1  MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEI--IT 60
          MS+R+++  PK+ELR+NL+   S A+  SL  S + S+ +  +SC+  E   E+EI   T
Sbjct: 1  MSRRNKNG-PKIELRLNLSPPSSQASQMSLVRSPTRSNSTSPSSCVSSETNQEDEIDTTT 60

Query: 61 RSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQ 97
           SM+LVGCP C MYVML+E   +CPKC + V LDF  HQ
Sbjct: 61 TSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHHQ 98

[Close]

BLAST of CmoCh20G001710.1 vs. NCBI nr
Match: gi|674924808|emb|CDY08510.1| (BnaA05g27460D [Brassica napus])

HSP 1 Score: 76.6 bits (187), Expect = 2.8e-11
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 1


Query: 1  MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEIITRS 60
          MS+R+RS  PK+EL++NL+  PS     S+  S S S+ +  NSC+  E   EE     S
Sbjct: 1  MSRRNRSG-PKLELKLNLSPPPSQGEQMSMVRSPSRSNTASPNSCVSSEPSQEEMETPIS 60

Query: 61 MMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFF 94
          M+LVGCP C MYVML++   +CPKC + V LDFF
Sbjct: 61 MVLVGCPRCLMYVMLSQDEPKCPKCKSTVLLDFF 93

The following BLAST results are available for this feature:

BLAST of CmoCh20G001710.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh20G001710.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJX5_CUCSA	1.9e-30	73.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425780 PE=4 SV=1	[more]
V7AGR8_PHAVU	6.7e-12	46.30	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G097300g PE=4 SV=1	[more]
M4F180_BRARP	1.5e-11	47.87	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A078F242_BRANA	1.9e-11	47.87	BnaA05g27460D protein OS=Brassica napus GN=BnaA05g27460D PE=4 SV=1	[more]
V4M909_EUTSA	4.3e-11	47.42	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021790mg PE=4 SV=1	[more]

BLAST of CmoCh20G001710.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G11600.1	2.9e-14	45.26	unknown protein	[more]
AT5G06270.1	7.8e-12	43.40	unknown protein	[more]
AT5G22270.1	2.6e-07	42.50	unknown protein	[more]

BLAST of CmoCh20G001710.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192837\|gb\|KGN48041.1\|	2.7e-30	73.68	hypothetical protein Csa_6G425780 [Cucumis sativus]	[more]
gi\|727583833\|ref\|XP_010464878.1\|	3.3e-12	47.47	PREDICTED: uncharacterized protein LOC104745369 [Camelina sativa]	[more]
gi\|593206576\|ref\|XP_007132476.1\|	9.6e-12	46.30	hypothetical protein PHAVU_011G097300g [Phaseolus vulgaris]	[more]
gi\|727412775\|ref\|XP_010497482.1\|	1.2e-11	47.47	PREDICTED: uncharacterized protein LOC104774622 [Camelina sativa]	[more]
gi\|674924808\|emb\|CDY08510.1\|	2.8e-11	47.87	BnaA05g27460D [Brassica napus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh20G001710	CmoCh20G001710	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh20G001710.1	CmoCh20G001710.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh20G001710.1.CDS.1	CmoCh20G001710.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh20G001710.1.exon.1	CmoCh20G001710.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33177	FAMILY NOT NAMED	coord: 13..93 score: 6.0