CmoCh15G003890 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh15G003890
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRotundifolia-like protein
LocationCmo_Chr15 : 1790455 .. 1790733 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCCTGGTCGGTGCTACTGCAACTGCTTCTACTGCTACTGCTACTGCCACCGATCCCTCTTTCTACTTCGATGACAAATGGAAGACGTCCAAGAAAGAGGGGTTGACCAGAACCCGCTCCTCATCATTCCCTCTCATCAAAACCTCCTCTCACAGAAGGTGCTCTTTTACTAGAAAGTGCGCTAGATTGGTCGAACAACAGAGGGCTCGATTCTACATCATGAGACGATGCGTCACCATGCTCATCTGCTGGCACGATTACACCGATTCTTGA

mRNA sequence

ATGGCTTCCCTGGTCGGTGCTACTGCAACTGCTTCTACTGCTACTGCTACTGCCACCGATCCCTCTTTCTACTTCGATGACAAATGGAAGACGTCCAAGAAAGAGGGGTTGACCAGAACCCGCTCCTCATCATTCCCTCTCATCAAAACCTCCTCTCACAGAAGGTGCTCTTTTACTAGAAAGTGCGCTAGATTGGTCGAACAACAGAGGGCTCGATTCTACATCATGAGACGATGCGTCACCATGCTCATCTGCTGGCACGATTACACCGATTCTTGA

Coding sequence (CDS)

ATGGCTTCCCTGGTCGGTGCTACTGCAACTGCTTCTACTGCTACTGCTACTGCCACCGATCCCTCTTTCTACTTCGATGACAAATGGAAGACGTCCAAGAAAGAGGGGTTGACCAGAACCCGCTCCTCATCATTCCCTCTCATCAAAACCTCCTCTCACAGAAGGTGCTCTTTTACTAGAAAGTGCGCTAGATTGGTCGAACAACAGAGGGCTCGATTCTACATCATGAGACGATGCGTCACCATGCTCATCTGCTGGCACGATTACACCGATTCTTGA
Homology
[Close]
BLAST of CmoCh15G003890 vs. TrEMBL
Match: A0A0A0KUB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517730 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.0e-35
Identity = 78/93 (83.87%), Postives = 85/93 (91.40%), Query Frame = 1 

Query: 1  MASLVGATATASTATATATDPSFYFDDKWKTSKKEGLTR-TRSSSFPLIKTSSHRRCSFT 60
          MAS+VGATAT +T+T T TDP FYFD+KWK SKKEGL R TRSSSFP+IK SSHRRCSFT
Sbjct: 1  MASIVGATATTTTSTTTPTDPPFYFDEKWKFSKKEGLNRSTRSSSFPIIKNSSHRRCSFT 60

Query: 61 RKCARLVEQQRARFYIMRRCVTMLICWHDYTDS 93
          RKCARLV++QRARFYIMRRCVTMLICWHDYTDS
Sbjct: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 93

[Close]
BLAST of CmoCh15G003890 vs. TrEMBL
Match: V7B6F3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G191700g PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-25
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 1 

Query: 12  STATATATDPSFYFDDKWKTSKKEGLTRTRSSSFPLIKTSSHRRCSFTRKCARLVEQQRA 71
           S A++ +T P+ YFD+KWK SKKEG TR+RSSS P IK SS RRC+F  KCARLV++QRA
Sbjct: 61  SMASSVSTTPTLYFDEKWKLSKKEGSTRSRSSSAPFIKNSSQRRCAFASKCARLVKEQRA 120

Query: 72  RFYIMRRCVTMLICWHDYTDS 93
           RFYIMRRCVTMLICW DY+DS
Sbjct: 121 RFYIMRRCVTMLICWRDYSDS 141

[Close]
BLAST of CmoCh15G003890 vs. TrEMBL
Match: A0A0S3RKU3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G088500 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.9e-25
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 1 

Query: 14 ATATATDPSFYFDDKWKTSKKEGLTRTRSSSFPLIKTSSHRRCSFTRKCARLVEQQRARF 73
          A++ +T P+ YFD+KWK SKKEG TR+RSS+ P IK SS RRC+F  KCARLV++QRARF
Sbjct: 2  ASSVSTTPTLYFDEKWKLSKKEGSTRSRSSTTPFIKNSSQRRCAFASKCARLVKEQRARF 61

Query: 74 YIMRRCVTMLICWHDYTDS 93
          YIMRRCVTMLICW DY+DS
Sbjct: 62 YIMRRCVTMLICWRDYSDS 80

[Close]
BLAST of CmoCh15G003890 vs. TrEMBL
Match: W9R2B1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025336 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-24
Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 1 

Query: 21 PSFYFDDKWKTSKKEGLTRTRSSSFPLIKTSS--------HRRCSFTRKCARLVEQQRAR 80
          PSFY D+KWK SKKE L+R+RSSSFPL+K +S         RRCSFTRKCARLV++QRAR
Sbjct: 13 PSFYLDEKWKLSKKESLSRSRSSSFPLVKNNSSSSSSAASRRRCSFTRKCARLVKEQRAR 72

Query: 81 FYIMRRCVTMLICWHDYTDS 93
          FYIMRRCVTMLICW DY+DS
Sbjct: 73 FYIMRRCVTMLICWRDYSDS 92

[Close]
BLAST of CmoCh15G003890 vs. TrEMBL
Match: A5BGF1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024942 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-24
Identity = 59/82 (71.95%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 11 ASTATATATDPSFYFDDKWKTSKKEGLTRTRSSSFPLIKTSSHRRCSFTRKCARLVEQQR 70
          ASTATA A  P FY D+KWK SKKEG +R+RSS+ PL++ SS RRCSFTRKCA LV++QR
Sbjct: 2  ASTATAAAAAPQFYLDEKWKLSKKEG-SRSRSSTSPLMRNSSQRRCSFTRKCASLVKEQR 61

Query: 71 ARFYIMRRCVTMLICWHDYTDS 93
          ARFYI+RRCVTMLICW +Y+DS
Sbjct: 62 ARFYIVRRCVTMLICWREYSDS 82

[Close]
BLAST of CmoCh15G003890 vs. TAIR10
Match: AT2G39705.1 (AT2G39705.1 ROTUNDIFOLIA like 8)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-17
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 1 

Query: 11 ASTATATATDPSFYFDDKWKTSKKEG----LTRTRSSSFPLIKTSSHRRCSFTRKCARLV 70
          AS+++ T +  S + D+KWK SKK+G    +TR+ S+S          RC+FTRKCARLV
Sbjct: 2  ASSSSLTRSG-SVHLDEKWKLSKKDGGASRITRSSSTSSSSFNGKKQGRCAFTRKCARLV 61

Query: 71 EQQRARFYIMRRCVTMLICWHD-YTDS 93
          ++QRARFYIMRRCV MLICW D Y+DS
Sbjct: 62 KEQRARFYIMRRCVIMLICWRDNYSDS 87

[Close]
BLAST of CmoCh15G003890 vs. TAIR10
Match: AT3G55515.1 (AT3G55515.1 ROTUNDIFOLIA like 7)

HSP 1 Score: 60.5 bits (145), Expect = 6.4e-10
Identity = 35/68 (51.47%), Postives = 41/68 (60.29%), Query Frame = 1 

Query: 32 SKKEGL-------TRTRSSSFPLIKTSSHRRCSFTRKCARLVEQQRARFYIMRRCVTMLI 91
          SKKE L         TRSS           +  FTRKC RLV++QRARFYIMRRCV MLI
Sbjct: 13 SKKESLGDNGGALNTTRSSR------QKQGKYGFTRKCGRLVKEQRARFYIMRRCVVMLI 72

Query: 92 CWHDYTDS 93
          CW D+ ++
Sbjct: 73 CWTDHNNN 74

[Close]
BLAST of CmoCh15G003890 vs. TAIR10
Match: AT2G29125.1 (AT2G29125.1 ROTUNDIFOLIA like 2)

HSP 1 Score: 54.3 bits (129), Expect = 4.6e-08
Identity = 33/88 (37.50%), Postives = 48/88 (54.55%), Query Frame = 1 

Query: 12  STATATATDPSFYFDDKWK-------TSKKEGLTRTRSSSFPLIKTSSHRRCSFTRKCAR 71
           ST+ ++   P F      K       +S     + +RS S    ++SS    S T+K + 
Sbjct: 28  STSASSTKSPIFVRSSSTKCSVPSSSSSSSSSSSISRSFSRKERRSSSSSSSSITQKYSS 87

Query: 72  LVEQQRARFYIMRRCVTMLICWHDYTDS 93
           L ++Q+ARFYIMRRCV ML+CWH + DS
Sbjct: 88  LAKEQKARFYIMRRCVAMLVCWHKHGDS 115

[Close]
BLAST of CmoCh15G003890 vs. TAIR10
Match: AT5G59510.1 (AT5G59510.1 ROTUNDIFOLIA like 5)

HSP 1 Score: 53.9 bits (128), Expect = 6.0e-08
Identity = 32/86 (37.21%), Postives = 50/86 (58.14%), Query Frame = 1 

Query: 17  TATDPSFY--FDDKWKTSKKEGLTRTRSSSFPLIKTSSHRRCSF-----------TRKCA 76
           ++++P F   F  K  +SK   L+R+ S+  P + TSS  +CS            TRKC 
Sbjct: 56  SSSEPIFRRSFSAKPTSSKSPFLSRSGSTKCP-VDTSSTSKCSISRSLSQKGASVTRKCR 115

Query: 77  RLVEQQRARFYIMRRCVTMLICWHDY 90
            + ++ ++RFYIM+RCV ML+CWH +
Sbjct: 116 NMAKEHKSRFYIMKRCVLMLVCWHKH 140

[Close]
BLAST of CmoCh15G003890 vs. TAIR10
Match: AT2G36985.1 (AT2G36985.1 DVL family protein)

HSP 1 Score: 53.5 bits (127), Expect = 7.9e-08
Identity = 19/32 (59.38%), Postives = 29/32 (90.62%), Query Frame = 1 

Query: 57 SFTRKCARLVEQQRARFYIMRRCVTMLICWHD 89
          +F +KC+ +V++QRA+FYI+RRC+ ML+CWHD
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWHD 45

[Close]
BLAST of CmoCh15G003890 vs. NCBI nr
Match: gi|778703484|ref|XP_011655374.1| (PREDICTED: uncharacterized protein LOC105435519 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-35
Identity = 78/93 (83.87%), Postives = 85/93 (91.40%), Query Frame = 1 

Query: 1  MASLVGATATASTATATATDPSFYFDDKWKTSKKEGLTR-TRSSSFPLIKTSSHRRCSFT 60
          MAS+VGATAT +T+T T TDP FYFD+KWK SKKEGL R TRSSSFP+IK SSHRRCSFT
Sbjct: 1  MASIVGATATTTTSTTTPTDPPFYFDEKWKFSKKEGLNRSTRSSSFPIIKNSSHRRCSFT 60

Query: 61 RKCARLVEQQRARFYIMRRCVTMLICWHDYTDS 93
          RKCARLV++QRARFYIMRRCVTMLICWHDYTDS
Sbjct: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 93

[Close]
BLAST of CmoCh15G003890 vs. NCBI nr
Match: gi|593489055|ref|XP_007141395.1| (hypothetical protein PHAVU_008G191700g [Phaseolus vulgaris])

HSP 1 Score: 122.9 bits (307), Expect = 3.0e-25
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 1 

Query: 12  STATATATDPSFYFDDKWKTSKKEGLTRTRSSSFPLIKTSSHRRCSFTRKCARLVEQQRA 71
           S A++ +T P+ YFD+KWK SKKEG TR+RSSS P IK SS RRC+F  KCARLV++QRA
Sbjct: 61  SMASSVSTTPTLYFDEKWKLSKKEGSTRSRSSSAPFIKNSSQRRCAFASKCARLVKEQRA 120

Query: 72  RFYIMRRCVTMLICWHDYTDS 93
           RFYIMRRCVTMLICW DY+DS
Sbjct: 121 RFYIMRRCVTMLICWRDYSDS 141

[Close]
BLAST of CmoCh15G003890 vs. NCBI nr
Match: gi|965665721|dbj|BAT81209.1| (hypothetical protein VIGAN_03088500 [Vigna angularis var. angularis])

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-24
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 1 

Query: 14 ATATATDPSFYFDDKWKTSKKEGLTRTRSSSFPLIKTSSHRRCSFTRKCARLVEQQRARF 73
          A++ +T P+ YFD+KWK SKKEG TR+RSS+ P IK SS RRC+F  KCARLV++QRARF
Sbjct: 2  ASSVSTTPTLYFDEKWKLSKKEGSTRSRSSTTPFIKNSSQRRCAFASKCARLVKEQRARF 61

Query: 74 YIMRRCVTMLICWHDYTDS 93
          YIMRRCVTMLICW DY+DS
Sbjct: 62 YIMRRCVTMLICWRDYSDS 80

[Close]
BLAST of CmoCh15G003890 vs. NCBI nr
Match: gi|703099220|ref|XP_010096589.1| (hypothetical protein L484_025336 [Morus notabilis])

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-24
Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 1 

Query: 21 PSFYFDDKWKTSKKEGLTRTRSSSFPLIKTSS--------HRRCSFTRKCARLVEQQRAR 80
          PSFY D+KWK SKKE L+R+RSSSFPL+K +S         RRCSFTRKCARLV++QRAR
Sbjct: 13 PSFYLDEKWKLSKKESLSRSRSSSFPLVKNNSSSSSSAASRRRCSFTRKCARLVKEQRAR 72

Query: 81 FYIMRRCVTMLICWHDYTDS 93
          FYIMRRCVTMLICW DY+DS
Sbjct: 73 FYIMRRCVTMLICWRDYSDS 92

[Close]
BLAST of CmoCh15G003890 vs. NCBI nr
Match: gi|147798371|emb|CAN67911.1| (hypothetical protein VITISV_024942 [Vitis vinifera])

HSP 1 Score: 119.8 bits (299), Expect = 2.5e-24
Identity = 59/82 (71.95%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 11 ASTATATATDPSFYFDDKWKTSKKEGLTRTRSSSFPLIKTSSHRRCSFTRKCARLVEQQR 70
          ASTATA A  P FY D+KWK SKKEG +R+RSS+ PL++ SS RRCSFTRKCA LV++QR
Sbjct: 2  ASTATAAAAAPQFYLDEKWKLSKKEG-SRSRSSTSPLMRNSSQRRCSFTRKCASLVKEQR 61

Query: 71 ARFYIMRRCVTMLICWHDYTDS 93
          ARFYI+RRCVTMLICW +Y+DS
Sbjct: 62 ARFYIVRRCVTMLICWREYSDS 82

The following BLAST results are available for this feature:
BLAST of CmoCh15G003890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh15G003890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUB0_CUCSA1.0e-3583.87Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517730 PE=4 SV=1[more]
V7B6F3_PHAVU2.1e-2571.60Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G191700g PE=4 SV=1[more]
A0A0S3RKU3_PHAAN7.9e-2570.89Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G088500 PE=... [more]
W9R2B1_9ROSA1.4e-2472.50Uncharacterized protein OS=Morus notabilis GN=L484_025336 PE=4 SV=1[more]
A5BGF1_VITVI1.8e-2471.95Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024942 PE=4 SV=1[more]
BLAST of CmoCh15G003890 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G39705.11.1e-1755.17 ROTUNDIFOLIA like 8[more]
AT3G55515.16.4e-1051.47 ROTUNDIFOLIA like 7[more]
AT2G29125.14.6e-0837.50 ROTUNDIFOLIA like 2[more]
AT5G59510.16.0e-0837.21 ROTUNDIFOLIA like 5[more]
AT2G36985.17.9e-0859.38 DVL family protein[more]
BLAST of CmoCh15G003890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778703484|ref|XP_011655374.1|1.4e-3583.87PREDICTED: uncharacterized protein LOC105435519 [Cucumis sativus][more]
gi|593489055|ref|XP_007141395.1|3.0e-2571.60hypothetical protein PHAVU_008G191700g [Phaseolus vulgaris][more]
gi|965665721|dbj|BAT81209.1|1.1e-2470.89hypothetical protein VIGAN_03088500 [Vigna angularis var. angularis][more]
gi|703099220|ref|XP_010096589.1|1.9e-2472.50hypothetical protein L484_025336 [Morus notabilis][more]
gi|147798371|emb|CAN67911.1|2.5e-2471.95hypothetical protein VITISV_024942 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012552DVL
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G003890.1CmoCh15G003890.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012552DVLPFAMPF08137DVLcoord: 68..85
score: 1.3
NoneNo IPR availablePANTHERPTHR33102FAMILY NOT NAMEDcoord: 24..92
score: 3.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh15G003890Cucsa.010940Cucumber (Gy14) v1cgycmoB0543
CmoCh15G003890Cucsa.165200Cucumber (Gy14) v1cgycmoB0466
CmoCh15G003890CmaCh15G003780Cucurbita maxima (Rimu)cmacmoB287
CmoCh15G003890CmaCh04G002060Cucurbita maxima (Rimu)cmacmoB689
CmoCh15G003890Csa5G182670Cucumber (Chinese Long) v2cmocuB295
CmoCh15G003890Csa5G517730Cucumber (Chinese Long) v2cmocuB288
CmoCh15G003890MELO3C021616Melon (DHL92) v3.5.1cmomeB239
CmoCh15G003890ClCG09G019600Watermelon (Charleston Gray)cmowcgB233
CmoCh15G003890CSPI05G09770Wild cucumber (PI 183967)cmocpiB304
CmoCh15G003890CSPI05G17870Wild cucumber (PI 183967)cmocpiB297
CmoCh15G003890Lsi04G008930Bottle gourd (USVL1VR-Ls)cmolsiB273
CmoCh15G003890Cp4.1LG01g10710Cucurbita pepo (Zucchini)cmocpeB277
CmoCh15G003890Cp4.1LG01g23760Cucurbita pepo (Zucchini)cmocpeB279
CmoCh15G003890MELO3C021616.2Melon (DHL92) v3.6.1cmomedB271
CmoCh15G003890MELO3C023874.2Melon (DHL92) v3.6.1cmomedB289
CmoCh15G003890CsaV3_5G026780Cucumber (Chinese Long) v3cmocucB0349
CmoCh15G003890Cla97C09G181050Watermelon (97103) v2cmowmbB305
CmoCh15G003890Bhi06G000517Wax gourdcmowgoB0374
CmoCh15G003890CsGy5G017550Cucumber (Gy14) v2cgybcmoB585
CmoCh15G003890Carg04487Silver-seed gourdcarcmoB0936
CmoCh15G003890Carg00258Silver-seed gourdcarcmoB0916
CmoCh15G003890Carg02341Silver-seed gourdcarcmoB0362
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh15G003890CmoCh04G012470Cucurbita moschata (Rifu)cmocmoB258
CmoCh15G003890CmoCh04G002070Cucurbita moschata (Rifu)cmocmoB259
CmoCh15G003890CmoCh04G027830Cucurbita moschata (Rifu)cmocmoB261
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh15G003890Cucurbita maxima (Rimu)cmacmoB692
CmoCh15G003890Watermelon (97103) v1cmowmB243
CmoCh15G003890Cucurbita pepo (Zucchini)cmocpeB268
CmoCh15G003890Bottle gourd (USVL1VR-Ls)cmolsiB261