CmoCh04G012470 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G012470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRotundifolia-like protein
LocationCmo_Chr04 : 6324080 .. 6324343 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTATTTCCTCATCTGCTGCCGCCGCCGTTCCGCCGCCGTTTTACATGGAGGAGAAATGGAAGCTGCCCAAGAAGGGAGCTCCGGCGAGAAGCCGATCTTCTTCCTCCTCGTGTCCTCTGATGAGAAATTCTTCCGAAAGGAGATGTTCTTTTACAAGAAAATGTGCAAAATTGGTGAAGGAACAGAGGGCTCGATTTTACATCATGAGGCGCTGTGTTACCATGCTCATTTGTTGGCATAACTACAGCGATTCCTGA

mRNA sequence

ATGGCTTCTATTTCCTCATCTGCTGCCGCCGCCGTTCCGCCGCCGTTTTACATGGAGGAGAAATGGAAGCTGCCCAAGAAGGGAGCTCCGGCGAGAAGCCGATCTTCTTCCTCCTCGTGTCCTCTGATGAGAAATTCTTCCGAAAGGAGATGTTCTTTTACAAGAAAATGTGCAAAATTGGTGAAGGAACAGAGGGCTCGATTTTACATCATGAGGCGCTGTGTTACCATGCTCATTTGTTGGCATAACTACAGCGATTCCTGA

Coding sequence (CDS)

ATGGCTTCTATTTCCTCATCTGCTGCCGCCGCCGTTCCGCCGCCGTTTTACATGGAGGAGAAATGGAAGCTGCCCAAGAAGGGAGCTCCGGCGAGAAGCCGATCTTCTTCCTCCTCGTGTCCTCTGATGAGAAATTCTTCCGAAAGGAGATGTTCTTTTACAAGAAAATGTGCAAAATTGGTGAAGGAACAGAGGGCTCGATTTTACATCATGAGGCGCTGTGTTACCATGCTCATTTGTTGGCATAACTACAGCGATTCCTGA
BLAST of CmoCh04G012470 vs. TrEMBL
Match: A0A0A0KQA4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182670 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 5.0e-37
Identity = 82/91 (90.11%), Postives = 85/91 (93.41%), Query Frame = 1

Query: 1  MASISSSAAAA----VPPPFYMEEKWKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRK 60
          M SISSSAAAA    VP PFYMEEKWKLPKKGAPAR+RSSSSSCPLMRNSS+RRCSFTRK
Sbjct: 1  MTSISSSAAAAAAAAVPSPFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRK 60

Query: 61 CAKLVKEQRARFYIMRRCVTMLICWHNYSDS 88
          CAKLVKEQRARFYIMRRCVTMLICWHNY+DS
Sbjct: 61 CAKLVKEQRARFYIMRRCVTMLICWHNYNDS 91

BLAST of CmoCh04G012470 vs. TrEMBL
Match: F6HNW1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g01890 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-24
Identity = 64/87 (73.56%), Postives = 72/87 (82.76%), Query Frame = 1

Query: 1  MASISSSAAAAVPPPFYMEEKWKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRKCAKL 60
          MAS +++AAAA P  FY++EKWKL KK     SRS SS+ PLMRNSS+RRCSFTRKCA L
Sbjct: 1  MASTATAAAAAAPQ-FYLDEKWKLSKKEG---SRSRSSTSPLMRNSSQRRCSFTRKCASL 60

Query: 61 VKEQRARFYIMRRCVTMLICWHNYSDS 88
          VKEQRARFYI+RRCVTMLICW  YSDS
Sbjct: 61 VKEQRARFYIVRRCVTMLICWREYSDS 83

BLAST of CmoCh04G012470 vs. TrEMBL
Match: A5BGF1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024942 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-24
Identity = 64/87 (73.56%), Postives = 72/87 (82.76%), Query Frame = 1

Query: 1  MASISSSAAAAVPPPFYMEEKWKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRKCAKL 60
          MAS +++AAAA  P FY++EKWKL KK     SRS SS+ PLMRNSS+RRCSFTRKCA L
Sbjct: 1  MASTATAAAAA--PQFYLDEKWKLSKKEG---SRSRSSTSPLMRNSSQRRCSFTRKCASL 60

Query: 61 VKEQRARFYIMRRCVTMLICWHNYSDS 88
          VKEQRARFYI+RRCVTMLICW  YSDS
Sbjct: 61 VKEQRARFYIVRRCVTMLICWREYSDS 82

BLAST of CmoCh04G012470 vs. TrEMBL
Match: M5X652_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024599mg PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.7e-24
Identity = 64/97 (65.98%), Postives = 77/97 (79.38%), Query Frame = 1

Query: 1  MASISSSAAAAV--------PPPFYMEEKWKLPKKGAPARSRSSSSSCPLMRNSSE--RR 60
          MAS+S++A +          PPPFY +EKWKL KK   +RS S SSSCPLM++SS+  RR
Sbjct: 1  MASLSATATSTAATTSSHHHPPPFYFDEKWKLSKKEGSSRS-SRSSSCPLMKSSSQSRRR 60

Query: 61 CSFTRKCAKLVKEQRARFYIMRRCVTMLICWHNYSDS 88
          CSF+RKCAKLVKEQRARFYI+RRCVTMLICW++YSDS
Sbjct: 61 CSFSRKCAKLVKEQRARFYIVRRCVTMLICWNDYSDS 96

BLAST of CmoCh04G012470 vs. TrEMBL
Match: B9HTG9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20930g PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.4e-23
Identity = 58/85 (68.24%), Postives = 73/85 (85.88%), Query Frame = 1

Query: 3  SISSSAAAAVPPPFYMEEKWKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRKCAKLVK 62
          +I+ + +A+ PP FY +EKWKL KK   +RSRSS+SS  LM++SS+RRCSFTRKCA+LVK
Sbjct: 2  AITLTHSASEPPQFYFDEKWKLSKKEGSSRSRSSTSS--LMKDSSQRRCSFTRKCARLVK 61

Query: 63 EQRARFYIMRRCVTMLICWHNYSDS 88
          EQRARFYI+RRCVTMLICW +YSD+
Sbjct: 62 EQRARFYIVRRCVTMLICWRDYSDA 84

BLAST of CmoCh04G012470 vs. TAIR10
Match: AT2G39705.1 (AT2G39705.1 ROTUNDIFOLIA like 8)

HSP 1 Score: 90.1 bits (222), Expect = 7.2e-19
Identity = 50/87 (57.47%), Postives = 62/87 (71.26%), Query Frame = 1

Query: 4  ISSSAAAAVPPPFYMEEKWKLPKK--GAPARSRSSSSSCPLMRNSSERRCSFTRKCAKLV 63
          ++SS++       +++EKWKL KK  GA   +RSSS+S        + RC+FTRKCA+LV
Sbjct: 1  MASSSSLTRSGSVHLDEKWKLSKKDGGASRITRSSSTSSSSFNGKKQGRCAFTRKCARLV 60

Query: 64 KEQRARFYIMRRCVTMLICWH-NYSDS 88
          KEQRARFYIMRRCV MLICW  NYSDS
Sbjct: 61 KEQRARFYIMRRCVIMLICWRDNYSDS 87

BLAST of CmoCh04G012470 vs. TAIR10
Match: AT2G29125.1 (AT2G29125.1 ROTUNDIFOLIA like 2)

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-11
Identity = 43/93 (46.24%), Postives = 54/93 (58.06%), Query Frame = 1

Query: 3   SISSSAAAAVPPPFYMEEKWKLPKKGAPARSRSSSSSCPLMRNSS--ERRCS------FT 62
           S S+SA++   P F      K      P+ S SSSSS  + R+ S  ERR S       T
Sbjct: 26  SFSTSASSTKSPIFVRSSSTKC---SVPSSSSSSSSSSSISRSFSRKERRSSSSSSSSIT 85

Query: 63  RKCAKLVKEQRARFYIMRRCVTMLICWHNYSDS 88
           +K + L KEQ+ARFYIMRRCV ML+CWH + DS
Sbjct: 86  QKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 115

BLAST of CmoCh04G012470 vs. TAIR10
Match: AT5G59510.1 (AT5G59510.1 ROTUNDIFOLIA like 5)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-10
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 1

Query: 35  SSSSSCPLMRNSSERRCSFTRKCAKLVKEQRARFYIMRRCVTMLICWHNYS 86
           SS+S C + R+ S++  S TRKC  + KE ++RFYIM+RCV ML+CWH ++
Sbjct: 91  SSTSKCSISRSLSQKGASVTRKCRNMAKEHKSRFYIMKRCVLMLVCWHKHA 141

BLAST of CmoCh04G012470 vs. TAIR10
Match: AT3G55515.1 (AT3G55515.1 ROTUNDIFOLIA like 7)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-10
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1

Query: 53 FTRKCAKLVKEQRARFYIMRRCVTMLICW--HNYSDS 88
          FTRKC +LVKEQRARFYIMRRCV MLICW  HN ++S
Sbjct: 40 FTRKCGRLVKEQRARFYIMRRCVVMLICWTDHNNNNS 76

BLAST of CmoCh04G012470 vs. TAIR10
Match: AT1G07490.1 (AT1G07490.1 ROTUNDIFOLIA like 3)

HSP 1 Score: 58.2 bits (139), Expect = 3.0e-09
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 1

Query: 3   SISSSAAAAVPPPFYMEEKWKLPKKGAPARSRSSSSSCPLMRNSSER-RCSFTRKCAKLV 62
           S S+SA+++  P F      K         S  SSSS  + R+SS++ + S T+K + L 
Sbjct: 31  SFSTSASSSKAPAFVRSSSTKC--------SVPSSSSSSISRSSSKKEKGSITQKYSSLA 90

Query: 63  KEQRARFYIMRRCVTMLICWHNY 85
           KEQ+ RFYIMRRCV ML+CWH +
Sbjct: 91  KEQKGRFYIMRRCVAMLVCWHKH 105

BLAST of CmoCh04G012470 vs. NCBI nr
Match: gi|659123484|ref|XP_008461687.1| (PREDICTED: uncharacterized protein LOC103500229 [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-37
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = 1

Query: 1  MASISSSA--AAAVPPPFYMEEKWKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRKCA 60
          M SISS+A  AAAVPPPFYMEEKWKLPKKGAPAR+RSSSSSCPLMRNSS+RRCSFTRKCA
Sbjct: 1  MTSISSAAAAAAAVPPPFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRKCA 60

Query: 61 KLVKEQRARFYIMRRCVTMLICWHNYSDS 88
          KLVKEQRARFYIMRRCVTMLICWHNY+DS
Sbjct: 61 KLVKEQRARFYIMRRCVTMLICWHNYNDS 89

BLAST of CmoCh04G012470 vs. NCBI nr
Match: gi|700195385|gb|KGN50562.1| (hypothetical protein Csa_5G182670 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 7.2e-37
Identity = 82/91 (90.11%), Postives = 85/91 (93.41%), Query Frame = 1

Query: 1  MASISSSAAAA----VPPPFYMEEKWKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRK 60
          M SISSSAAAA    VP PFYMEEKWKLPKKGAPAR+RSSSSSCPLMRNSS+RRCSFTRK
Sbjct: 1  MTSISSSAAAAAAAAVPSPFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRK 60

Query: 61 CAKLVKEQRARFYIMRRCVTMLICWHNYSDS 88
          CAKLVKEQRARFYIMRRCVTMLICWHNY+DS
Sbjct: 61 CAKLVKEQRARFYIMRRCVTMLICWHNYNDS 91

BLAST of CmoCh04G012470 vs. NCBI nr
Match: gi|694352127|ref|XP_009357749.1| (PREDICTED: uncharacterized protein LOC103948440 [Pyrus x bretschneideri])

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-24
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 1

Query: 2  ASISSSAAAAVPPPFYMEEKWKLPKKGAPARSRSSSSSCPLMRNS--SERRCSFTRKCAK 61
          ++ ++SA+   PPPFY +EKWKL KK A +RS  SSSS  LM+NS  S RRCSF+RKCA+
Sbjct: 12 SAATASASHHHPPPFYFDEKWKLSKKEASSRSSRSSSSIHLMKNSSRSNRRCSFSRKCAR 71

Query: 62 LVKEQRARFYIMRRCVTMLICWHNYSDS 88
          LVKEQRARFYIMRRCVTMLICWH+YSDS
Sbjct: 72 LVKEQRARFYIMRRCVTMLICWHDYSDS 99

BLAST of CmoCh04G012470 vs. NCBI nr
Match: gi|225449460|ref|XP_002283227.1| (PREDICTED: uncharacterized protein LOC100263265 [Vitis vinifera])

HSP 1 Score: 120.2 bits (300), Expect = 1.8e-24
Identity = 64/87 (73.56%), Postives = 72/87 (82.76%), Query Frame = 1

Query: 1  MASISSSAAAAVPPPFYMEEKWKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRKCAKL 60
          MAS +++AAAA P  FY++EKWKL KK     SRS SS+ PLMRNSS+RRCSFTRKCA L
Sbjct: 1  MASTATAAAAAAPQ-FYLDEKWKLSKKEG---SRSRSSTSPLMRNSSQRRCSFTRKCASL 60

Query: 61 VKEQRARFYIMRRCVTMLICWHNYSDS 88
          VKEQRARFYI+RRCVTMLICW  YSDS
Sbjct: 61 VKEQRARFYIVRRCVTMLICWREYSDS 83

BLAST of CmoCh04G012470 vs. NCBI nr
Match: gi|147798371|emb|CAN67911.1| (hypothetical protein VITISV_024942 [Vitis vinifera])

HSP 1 Score: 119.8 bits (299), Expect = 2.4e-24
Identity = 64/87 (73.56%), Postives = 72/87 (82.76%), Query Frame = 1

Query: 1  MASISSSAAAAVPPPFYMEEKWKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRKCAKL 60
          MAS +++AAAA  P FY++EKWKL KK     SRS SS+ PLMRNSS+RRCSFTRKCA L
Sbjct: 1  MASTATAAAAA--PQFYLDEKWKLSKKEG---SRSRSSTSPLMRNSSQRRCSFTRKCASL 60

Query: 61 VKEQRARFYIMRRCVTMLICWHNYSDS 88
          VKEQRARFYI+RRCVTMLICW  YSDS
Sbjct: 61 VKEQRARFYIVRRCVTMLICWREYSDS 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KQA4_CUCSA5.0e-3790.11Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182670 PE=4 SV=1[more]
F6HNW1_VITVI1.3e-2473.56Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g01890 PE=4 SV=... [more]
A5BGF1_VITVI1.7e-2473.56Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024942 PE=4 SV=1[more]
M5X652_PRUPE3.7e-2465.98Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024599mg PE=4 SV=1[more]
B9HTG9_POPTR2.4e-2368.24Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20930g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G39705.17.2e-1957.47 ROTUNDIFOLIA like 8[more]
AT2G29125.11.9e-1146.24 ROTUNDIFOLIA like 2[more]
AT5G59510.11.6e-1050.98 ROTUNDIFOLIA like 5[more]
AT3G55515.11.6e-1078.38 ROTUNDIFOLIA like 7[more]
AT1G07490.13.0e-0943.37 ROTUNDIFOLIA like 3[more]
Match NameE-valueIdentityDescription
gi|659123484|ref|XP_008461687.1|1.1e-3792.13PREDICTED: uncharacterized protein LOC103500229 [Cucumis melo][more]
gi|700195385|gb|KGN50562.1|7.2e-3790.11hypothetical protein Csa_5G182670 [Cucumis sativus][more]
gi|694352127|ref|XP_009357749.1|1.4e-2470.45PREDICTED: uncharacterized protein LOC103948440 [Pyrus x bretschneideri][more]
gi|225449460|ref|XP_002283227.1|1.8e-2473.56PREDICTED: uncharacterized protein LOC100263265 [Vitis vinifera][more]
gi|147798371|emb|CAN67911.1|2.4e-2473.56hypothetical protein VITISV_024942 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012552DVL
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G012470.1CmoCh04G012470.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012552DVLPFAMPF08137DVLcoord: 62..80
score: 2.5
NoneNo IPR availablePANTHERPTHR33102FAMILY NOT NAMEDcoord: 33..87
score: 3.0

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G012470CmoCh15G003890Cucurbita moschata (Rifu)cmocmoB258
CmoCh04G012470CmoCh04G002070Cucurbita moschata (Rifu)cmocmoB464