Carg18329 (gene) Silver-seed gourd

Overview
NameCarg18329
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_106 : 117095 .. 121380 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGAAATGGAAGCTGCCCAAGAAGGAGGCTCCCACGAGAACCCGATCATCTTCTTCTTCCTGTCCTCTGATGAGAAATTCTTCTGAGAGGAGGCGTTCTTTTACCAGAAAATGTGCCAAATTGGTAAAAGAACAAAGGGCTCGATTTTACATCATGAGGCGCTGTGTTGCCATGCTCATCTGTTGGCATAACTACAGTGATTCATGAGATCCCCTGTTTAGAGAAATATCAGAAAATCAGAATCAGATGATTTGGGTTTTGTTTTGGTTTGGTTTGTTTTGATTTGGTTGAAAATGCAATATGCTCTATAAAACCCAGATGGGATTTTGCAGAAGTATTGCAAATCCGGATCTTAGAGAGATTAGAGAGAGATTTTTATATACTTGTAAATAATTATATATATATATATGGTGTAGTCCTGGAATCTCTGATGAGTTTAAATTTCGTTTCTTTTTTGAATCTGATGGGTGAGATTTGTAGGGTTCGTTCTTATTAACAAGCATTCATCTTTGTAACTTCTTCCATTGTTTTTGTCTAAATCAAATGCACCTTCTTCTTCATCCTTATATATCTATCTCTCTGGATTCTTTGGGTTTTGGGTTATTCTCTGAGTTTCCTTCTCTCTCTATGATTTTAGAGAGAGAGAGAGAGAGAGAGTGTGTGTGTGTTGGTTGAATCACACCAAAACAAGGGCAGCTAAGGTACCTGAAGCTGAAGAGGGATGTGTTTGTGGGTTTCAATGAGATGGCAAAAAGAAAAAGAGTGTTGGATAAGAGTTAAATTAAAGGTAAGCAAGGAAAAACAGGCTTTTGCAGTGATTAAAGCTGTGTAAGAACTTAATTAGGTTGAAGATAGAGAGAAATGAAGTGTTGGGTAATGGGTATTAGTTAAATTTAATGAAGCTCAAAGGGAAGCAAGGAAGAACAGGGTTTGCAGTGATTAAAGTTGTGGAAGAGATTCATTAGCTCCAATTTAGAGAGAAAGAAAAAGTGTGTTGGATCTCTGTTAAATTTAATGAAACTCAAAGCGCAGCGCAGAGCAGAGCAAGGAAAACACACAGGCTTTGCGGTGATTAAAGTTATGTAATTAAATCATTTGGATTGGATTGGATTGGATTATATCAGATCAGATCAGATCATAAGCAAATTTCTGCAGTCAAAACAGCAAAAGGCAAAGGGGGAAAGGGAGCTTCAATTAAGCTTTTGACAAAATAGCTTGAGAAGTAAATAGAGCCTGGAGGACACGCTTACCCATTGTACCTCTCCTAATTTACACCCACATTTGTTCCCTCCTATAGCCCCATCTAAACCCATTTCCTCTTTCCTTCTCTAGAACCATCTTACTTCTTCTCAAACAGAATTAACAACTTCAAGTAGTTAATCTTCGATCTTCTCGAGTTTAGGGTAGCTAGGCATACCCTGGAGTTCCATACAAGATAACATTTAATCAGCTTGAGTATAATTCAAGTAGCTAAGACATTATATCATTGACTAATAGATCACAAATTTGAGTCACCAAAGTGAAAAAAAGAAACAACTAAATTCATCTCTGTCTACGTGCATCTTACTTGATACACTTACATCTACGTTACATGAATGAACGGATACAATATCCAAATGAGAGCATTTTTAAGAATAGAAATAGTTTTTTTTTTTTTTTTTTTTTTTTTAAGCGTGAGTGAGTAGTTTAATGAGAGGCAGAGTGTAGGGACATAATAAGGGAGCCGTAAGAATGAATTATCATCTGAGAGATTCTTCAGAAAAGTACAAAAGATAAAAAAAAAATAAAGTGGGAAAGGTCATTATTTTGGTGACCTTCATACTTCTAATTTCTCTATTCTCGCTTTAACTATTTTTATTTTCGTAACACTTAATTACTCATATACATTATCATTATCATAATTGAATCGGTCTTATTCACGGTTCCTGATAAATTAAAAAAATGAAAAAGAATAGTCGTAAGGTTGAATATCAGTCTACATATGTATTCATATTGACCTCGAGTTTATTTTTCAAATTGAAAATTTGAATCTCTACTCAATATTTGTAGTCGTATAAGATATTTAAACTAAAAAAATTAATTAAAATGTAGCAAAAATGCATGATTTTTATTTTTTCAAGAAAAAGGAGTGGTTTTTGTAGTGAATTTAGAGTAGTCAATATCATTCCCAATGCCATTAACAGAGAGGTTAAACAGAAATTATTGCCCCCTCCTTTTTTAACACTTTAATTACTCCAAAGTCAAGTAACAAAATCTACTTTTTACTCGACATTATCATATTTTTTACCCCTCAATCCAACCAAAATTTTGACCAAAAAAAAAAAAGAACTTTAATGTGCTAATAAATAATTGCAATTTTCCCTTGGCGTGCCTGAGTAGGACCAACCTTAAAAACAATTAGTACATTAAAAAAAAAAAAAAAATCAATTTTAGGGTGTGCTTGACTCAATCATTGAATTAAAAAAAGTTTGGAAATACATTATAACCTATAAACCTCTAAGCTACTTTTGTGTTTATTCAAAAGCCTATTGCCCCATCTTTAAATCCAAGAAAATGAGTTTAGTTGTCACTAAGTTTCGAGACGATTGAAATTACATGTTAGTGATCTATATTGGATAACCTTCGAGTCACTTCGTGTTTCAAAAATTAGATTTAAATATCTTTATAGTGTTGGATAACCCGAAAAAAAGGTTAAGAGAAAATAAGAAGAAATCGAAAAATATTAAAAAGTCTCGATCATAATCTTTTTCACTTTAATTGTAGTCGCCCTCTCTTAAATTCTTGAATGTGCAATTAAACGTTATAAATCATATTAGCCTTGCAAATAATTGGTAAATAAAAAAAAAATGTTAAAATTCTTATTTGGTGTCTCTTAGCTTATTTTTTTTTAAAAAAAAAAAATCACTATTTCAACAACTTCAAAATTTTATTTTTATTTTATAAAAATAACTTTATATTACTATTAAAAAAATAGTGTCATGCCCGTACAAAAAATAGTGTCTCTCTCGTTTTGTCCCACAACTTTAAAAATAAAAATAAAAATACAAAATTTTGGTATAAAAATAATAGGACAATCTAGCTAGGTGAATCCTATTATGAAATTAAATAATAATAATATTATTATAAGTAAATAATAAATATGAAAAATTATGAATCTATTTAAAAAGATTTGAATATAGTTGAATGAATTAATACATCATATATTTTCATAATAAAAAGTGAAAATAGAATTAAAATGAAAAGTTGGAGAAACCAATAATTAGTATTAATTGAGAATCTGATGTCATAATTGGGTAGTGATGGAATTTTAGGGAACTTAACGTCAATTAAATTCTCCCACTAAATTCTTTTTTATTTAAGCCTTCCTTGTCACTCAAATTCCTGGGCCCCCCACAACTTTCACAATTTTTTCTTCTTTTTTAAAAAATAATAATAGAAAAATAGAAAATCCAAGATCTCCATTGACATGGGCCCACTCCGGGCCCTATCAAATCTAATCCTAATAAAGGCCTATGGGCTTTTCCTCCATAGAAGTGGCCCATTATGGGCCCATCTCGGAACTTGAACCACCAATTTTGTTTGTTCTCTTTTTTAACGGCGTTTTTTCCGACCGTTACCATCGGATCGGCATGCTGCCCGCTTTCGAATCAAGATTTTAAGACGTTACGTGGCGGAATCTTGTTAGGATTGTCAGATTTGCGTCGAGTTGGACCCCACTGTCACGGCTTTTGGCGGCACTTCACACGTGGACCAATTAGCAGAGAGCACGTTTTATACTTCGCTTCGCTGGCGGTCAACTCTTGATCCACGTGCCTGGTTTTTTTTTATTTATTTTTATTATCATCCTTTTACGCATAAAAATGTTTGAATCTCAATTGATTAGCGTACCTTTAGATTATGAAGGTTGAAATGTTTGAATTCCAGAAGCTCCTTCATCCGCTCATCAACTCACCTGGTTACTCATGATCACGGACATCTCAATTGCGAACCTGCCTAACACAAAACCCTCCACAAATGACATAACCATTGATTCTAACATGAACTGCATAACAGACAACTTACTACGGGAAACCTCCCAATTTACACTGCAGTTCAATAGCATGGTGGTCATGTTACAGGCCAAAATTACCGTGAGATCACATCCGTTCGGGAGTGGGCTTGGACTGCTACAAATGGTATCAAGGCTAGCCGTGAAAGGGGTAGACACCAGACAATATGGCAGCAAGGAGGCTATCCCCAAAGGAGGTAGACATGAGACGGTGTGCCAGCAAGGACGTTAG

mRNA sequence

ATGGAGGAGAAATGGAAGCTGCCCAAGAAGGAGGCTCCCACGAGAACCCGATCATCTTCTTCTTCCTGTCCTCTGATGAGAAATTCTTCTGAGAGGAGGCGTTCTTTTACCAGAAAATGTGCCAAATTGGATTGTCAGATTTGCGTCGAGTTGGACCCCACTGTCACGGCTTTTGGCGGCACTTCACACGTGGACCAATTAGCAGAGAGCACGTTTTATACTTCGCTTCGCTGGCGGTCAACTCTTGATCCACAAGCTCCTTCATCCGCTCATCAACTCACCTGGTTACTCATGATCACGGACATCTCAATTGCGAACCTGCCTAACACAAAACCCTCCACAAATGACATAACCATTGATTCTAACATGAACTGCATAACAGACAACTTACTACGGGAAACCTCCCAATTTACACTGCAGTTCAATAGCATGGTGGTCATGTTACAGGCCAAAATTACCGTGAGATCACATCCGTTCGGGAGTGGGCTTGGACTGCTACAAATGGTATCAAGGCTAGCCGTGAAAGGGGTAGACACCAGACAATATGGCAGCAAGGAGGCTATCCCCAAAGGAGGTAGACATGAGACGGTGTGCCAGCAAGGACGTTAG

Coding sequence (CDS)

ATGGAGGAGAAATGGAAGCTGCCCAAGAAGGAGGCTCCCACGAGAACCCGATCATCTTCTTCTTCCTGTCCTCTGATGAGAAATTCTTCTGAGAGGAGGCGTTCTTTTACCAGAAAATGTGCCAAATTGGATTGTCAGATTTGCGTCGAGTTGGACCCCACTGTCACGGCTTTTGGCGGCACTTCACACGTGGACCAATTAGCAGAGAGCACGTTTTATACTTCGCTTCGCTGGCGGTCAACTCTTGATCCACAAGCTCCTTCATCCGCTCATCAACTCACCTGGTTACTCATGATCACGGACATCTCAATTGCGAACCTGCCTAACACAAAACCCTCCACAAATGACATAACCATTGATTCTAACATGAACTGCATAACAGACAACTTACTACGGGAAACCTCCCAATTTACACTGCAGTTCAATAGCATGGTGGTCATGTTACAGGCCAAAATTACCGTGAGATCACATCCGTTCGGGAGTGGGCTTGGACTGCTACAAATGGTATCAAGGCTAGCCGTGAAAGGGGTAGACACCAGACAATATGGCAGCAAGGAGGCTATCCCCAAAGGAGGTAGACATGAGACGGTGTGCCAGCAAGGACGTTAG

Protein sequence

MEEKWKLPKKEAPTRTRSSSSSCPLMRNSSERRRSFTRKCAKLDCQICVELDPTVTAFGGTSHVDQLAESTFYTSLRWRSTLDPQAPSSAHQLTWLLMITDISIANLPNTKPSTNDITIDSNMNCITDNLLRETSQFTLQFNSMVVMLQAKITVRSHPFGSGLGLLQMVSRLAVKGVDTRQYGSKEAIPKGGRHETVCQQGR
Homology
[Close]
BLAST of Carg18329 vs. NCBI nr
Match: KGN50562.1 (hypothetical protein Csa_5G182670 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 8.0e-11
Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 1  MEEKWKLPKKEAPTRTRSSSSSCPLMRNSSERRRSFTRKCAKL 44
          MEEKWKLPKK AP RTRSSSSSCPLMRNSS+RR SFTRKCAKL
Sbjct: 22 MEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRKCAKL 64

[Close]
BLAST of Carg18329 vs. NCBI nr
Match: XP_008461687.1 (PREDICTED: uncharacterized protein LOC103500229 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-08
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 5  WKLPKKEAPTRTRSSSSSCPLMRNSSERRRSFTRKCAKL 44
          WKLPKK AP RTRSSSSSCPLMRNSS+RR SFTRKCAKL
Sbjct: 24 WKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRKCAKL 62

[Close]
BLAST of Carg18329 vs. NCBI nr
Match: XP_022139156.1 (uncharacterized protein LOC111010130 [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 9.2e-07
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 1  MEEKWKLPKKEAPTRTRSSSSSCPLMRNSSERRRSFTRKCAKL 44
          +EEKWKL KKEAP R+R SS+S PLMRNSSERR SFTRKCAKL
Sbjct: 14 LEEKWKLSKKEAPARSR-SSASYPLMRNSSERRCSFTRKCAKL 55

[Close]
BLAST of Carg18329 vs. TrEMBL
Match: tr|A0A0A0KQA4|A0A0A0KQA4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182670 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.3e-11
Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 1  MEEKWKLPKKEAPTRTRSSSSSCPLMRNSSERRRSFTRKCAKL 44
          MEEKWKLPKK AP RTRSSSSSCPLMRNSS+RR SFTRKCAKL
Sbjct: 22 MEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRKCAKL 64

[Close]
BLAST of Carg18329 vs. TrEMBL
Match: tr|A0A1S3CF72|A0A1S3CF72_CUCME (uncharacterized protein LOC103500229 OS=Cucumis melo OX=3656 GN=LOC103500229 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.5e-09
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 5  WKLPKKEAPTRTRSSSSSCPLMRNSSERRRSFTRKCAKL 44
          WKLPKK AP RTRSSSSSCPLMRNSS+RR SFTRKCAKL
Sbjct: 24 WKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRKCAKL 62

The following BLAST results are available for this feature:
BLAST of Carg18329 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50562.18.0e-1190.70hypothetical protein Csa_5G182670 [Cucumis sativus][more]
XP_008461687.11.3e-0889.74PREDICTED: uncharacterized protein LOC103500229 [Cucumis melo][more]
XP_022139156.19.2e-0781.40uncharacterized protein LOC111010130 [Momordica charantia][more]
BLAST of Carg18329 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg18329 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg18329 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KQA4|A0A0A0KQA4_CUCSA5.3e-1190.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182670 PE=4 SV=1[more]
tr|A0A1S3CF72|A0A1S3CF72_CUCME8.5e-0989.74uncharacterized protein LOC103500229 OS=Cucumis melo OX=3656 GN=LOC103500229 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18329-RACarg18329-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg18329Cla004000Watermelon (97103) v1carwmB0087
Carg18329Csa5G182670Cucumber (Chinese Long) v2carcuB0098
Carg18329MELO3C023874Melon (DHL92) v3.5.1carmeB0089
Carg18329ClCG07G003480Watermelon (Charleston Gray)carwcgB0090
Carg18329CSPI05G09770Wild cucumber (PI 183967)carcpiB0102
Carg18329Cucsa.165200Cucumber (Gy14) v1carcgyB0108
Carg18329CmaCh04G011760Cucurbita maxima (Rimu)carcmaB0116
Carg18329CmaCh04G002060Cucurbita maxima (Rimu)carcmaB0115
Carg18329CmoCh04G012470Cucurbita moschata (Rifu)carcmoB0124
Carg18329Lsi04G008930Bottle gourd (USVL1VR-Ls)carlsiB080
Carg18329Cp4.1LG01g10710Cucurbita pepo (Zucchini)carcpeB0131
Carg18329CsGy5G007120Cucumber (Gy14) v2carcgybB0098
Carg18329MELO3C023874.2Melon (DHL92) v3.6.1carmedB0091
Carg18329CsaV3_5G008210Cucumber (Chinese Long) v3carcucB0105
Carg18329Bhi06G000858Wax gourdcarwgoB0100
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg18329Carg00258Silver-seed gourdcarcarB099
The following block(s) are covering this gene:
GeneOrganismBlock
Carg18329Cucurbita pepo (Zucchini)carcpeB0128
Carg18329Silver-seed gourdcarcarB095
Carg18329Silver-seed gourdcarcarB097
Carg18329Silver-seed gourdcarcarB100
Carg18329Cucumber (Gy14) v2carcgybB0099
Carg18329Cucumber (Gy14) v1carcgyB0105
Carg18329Cucumber (Gy14) v1carcgyB0107
Carg18329Cucurbita maxima (Rimu)carcmaB0113
Carg18329Cucurbita maxima (Rimu)carcmaB0114
Carg18329Cucurbita moschata (Rifu)carcmoB0121
Carg18329Cucurbita moschata (Rifu)carcmoB0122
Carg18329Cucurbita moschata (Rifu)carcmoB0123
Carg18329Cucurbita pepo (Zucchini)carcpeB0130
Carg18329Cucurbita pepo (Zucchini)carcpeB0132
Carg18329Wild cucumber (PI 183967)carcpiB0104
Carg18329Cucumber (Chinese Long) v2carcuB0099
Carg18329Cucumber (Chinese Long) v3carcucB0107
Carg18329Melon (DHL92) v3.5.1carmeB0092
Carg18329Melon (DHL92) v3.5.1carmeB0093
Carg18329Melon (DHL92) v3.6.1carmedB0093
Carg18329Melon (DHL92) v3.6.1carmedB0095
Carg18329Watermelon (Charleston Gray)carwcgB0089
Carg18329Watermelon (97103) v2carwmbB0089
Carg18329Watermelon (97103) v2carwmbB0090
Carg18329Watermelon (97103) v2carwmbB0091
Carg18329Wax gourdcarwgoB0102