Carg00258 (gene) Silver-seed gourd

Overview
NameCarg00258
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRotundifolia-like protein
LocationCucurbita_argyrosperma_scaffold_001 : 1386055 .. 1386318 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTATTTCCTCATCTGCTGCCGCCGCCGTTCCGCCGCCGTTTTACATGGAGGAGAAATGGAAGCTGCCCAAGAAGGGAGCTCCGGCGAGAAGCCGATCTTCTTCCTCCTCGTGTCCTCTGATGAGAAATTCTTCTGAAAGGAGATGTTCTTTTACAAGAAAATGTGCAAAATTGGTGAAGGAACAGAGAGCTCGATTTTACATCATGAGGCGCTGTGTTACCATGCTCATTTGTTGGCATAACTACAGCGATTCCTGA

mRNA sequence

ATGGCTTCTATTTCCTCATCTGCTGCCGCCGCCGTTCCGCCGCCGTTTTACATGGAGGAGAAATGGAAGCTGCCCAAGAAGGGAGCTCCGGCGAGAAGCCGATCTTCTTCCTCCTCGTGTCCTCTGATGAGAAATTCTTCTGAAAGGAGATGTTCTTTTACAAGAAAATGTGCAAAATTGGTGAAGGAACAGAGAGCTCGATTTTACATCATGAGGCGCTGTGTTACCATGCTCATTTGTTGGCATAACTACAGCGATTCCTGA

Coding sequence (CDS)

ATGGCTTCTATTTCCTCATCTGCTGCCGCCGCCGTTCCGCCGCCGTTTTACATGGAGGAGAAATGGAAGCTGCCCAAGAAGGGAGCTCCGGCGAGAAGCCGATCTTCTTCCTCCTCGTGTCCTCTGATGAGAAATTCTTCTGAAAGGAGATGTTCTTTTACAAGAAAATGTGCAAAATTGGTGAAGGAACAGAGAGCTCGATTTTACATCATGAGGCGCTGTGTTACCATGCTCATTTGTTGGCATAACTACAGCGATTCCTGA

Protein sequence

MASISSSAAAAVPPPFYMEEKWKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRKCAKLVKEQRARFYIMRRCVTMLICWHNYSDS
Homology
[Close]
BLAST of Carg00258 vs. NCBI nr
Match: XP_008461687.1 (PREDICTED: uncharacterized protein LOC103500229 [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 2.4e-28
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 22 WKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRKCAKLVKEQRARFYIMRRCVTMLICW 81
          WKLPKKGAPAR+RSSSSSCPLMRNSS+RRCSFTRKCAKLVKEQRARFYIMRRCVTMLICW
Sbjct: 24 WKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRKCAKLVKEQRARFYIMRRCVTMLICW 83

Query: 82 HNYSDS 88
          HNY+DS
Sbjct: 84 HNYNDS 89

[Close]
BLAST of Carg00258 vs. NCBI nr
Match: KGN50562.1 (hypothetical protein Csa_5G182670 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 2.4e-28
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 22 WKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRKCAKLVKEQRARFYIMRRCVTMLICW 81
          WKLPKKGAPAR+RSSSSSCPLMRNSS+RRCSFTRKCAKLVKEQRARFYIMRRCVTMLICW
Sbjct: 26 WKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRKCAKLVKEQRARFYIMRRCVTMLICW 85

Query: 82 HNYSDS 88
          HNY+DS
Sbjct: 86 HNYNDS 91

[Close]
BLAST of Carg00258 vs. NCBI nr
Match: XP_022139156.1 (uncharacterized protein LOC111010130 [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-23
Identity = 60/66 (90.91%), Postives = 62/66 (93.94%), Query Frame = 0 

Query: 22 WKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRKCAKLVKEQRARFYIMRRCVTMLICW 81
          WKL KK APARSR SS+S PLMRNSSERRCSFTRKCAKLVKEQRARFYIMRRCVTMLICW
Sbjct: 18 WKLSKKEAPARSR-SSASYPLMRNSSERRCSFTRKCAKLVKEQRARFYIMRRCVTMLICW 77

Query: 82 HNYSDS 88
          HN+SDS
Sbjct: 78 HNHSDS 82

[Close]
BLAST of Carg00258 vs. NCBI nr
Match: OAY46117.1 (hypothetical protein MANES_07G117800 [Manihot esculenta])

HSP 1 Score: 103.6 bits (257), Expect = 3.5e-19
Identity = 52/66 (78.79%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 22 WKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRKCAKLVKEQRARFYIMRRCVTMLICW 81
          WKL KK   +RS S SSS P M+NSS+RRCSFTRKCA+LVKEQRARFYIMRRCVTMLICW
Sbjct: 21 WKLSKKEGSSRS-SRSSSSPFMKNSSQRRCSFTRKCARLVKEQRARFYIMRRCVTMLICW 80

Query: 82 HNYSDS 88
           +YSDS
Sbjct: 81 RDYSDS 85

[Close]
BLAST of Carg00258 vs. NCBI nr
Match: PNT22972.1 (hypothetical protein POPTR_008G057800v3 [Populus trichocarpa])

HSP 1 Score: 102.8 bits (255), Expect = 5.9e-19
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 0 

Query: 22 WKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRKCAKLVKEQRARFYIMRRCVTMLICW 81
          WKL KK   +RSRSS+SS  LM+NSS+RRCSFTRKCA+LVKEQRARFYIMRRCVTMLICW
Sbjct: 21 WKLTKKEGSSRSRSSTSS--LMKNSSQRRCSFTRKCARLVKEQRARFYIMRRCVTMLICW 80

Query: 82 HNYSDS 88
           +Y+D+
Sbjct: 81 RDYNDA 84

[Close]
BLAST of Carg00258 vs. TAIR10
Match: AT2G39705.1 (ROTUNDIFOLIA like 8)

HSP 1 Score: 84.3 bits (207), Expect = 3.9e-17
Identity = 46/69 (66.67%), Postives = 51/69 (73.91%), Query Frame = 0 

Query: 22 WKLPKK--GAPARSRSSSSSCPLMRNSSERRCSFTRKCAKLVKEQRARFYIMRRCVTMLI 81
          WKL KK  GA   +RSSS+S        + RC+FTRKCA+LVKEQRARFYIMRRCV MLI
Sbjct: 19 WKLSKKDGGASRITRSSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRCVIMLI 78

Query: 82 CWH-NYSDS 88
          CW  NYSDS
Sbjct: 79 CWRDNYSDS 87

[Close]
BLAST of Carg00258 vs. TAIR10
Match: AT5G59510.1 (ROTUNDIFOLIA like 5)

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-10
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 35  SSSSSCPLMRNSSERRCSFTRKCAKLVKEQRARFYIMRRCVTMLICWHNYS 86
           SS+S C + R+ S++  S TRKC  + KE ++RFYIM+RCV ML+CWH ++
Sbjct: 91  SSTSKCSISRSLSQKGASVTRKCRNMAKEHKSRFYIMKRCVLMLVCWHKHA 141

[Close]
BLAST of Carg00258 vs. TAIR10
Match: AT3G55515.1 (ROTUNDIFOLIA like 7)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-10
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 53 FTRKCAKLVKEQRARFYIMRRCVTMLICW--HNYSDS 88
          FTRKC +LVKEQRARFYIMRRCV MLICW  HN ++S
Sbjct: 40 FTRKCGRLVKEQRARFYIMRRCVVMLICWTDHNNNNS 76

[Close]
BLAST of Carg00258 vs. TAIR10
Match: AT1G53708.1 (ROTUNDIFOLIA like 9)

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-08
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 52 SFTRKCAKLVKEQRARFYIMRRCVTMLICWHNYSD 87
          +FT KCA LVKEQRAR YI+RRC TML CW+   D
Sbjct: 13 AFTSKCASLVKEQRARLYILRRCATMLCCWYIQGD 47

[Close]
BLAST of Carg00258 vs. TAIR10
Match: AT3G14362.1 (ROTUNDIFOLIA like 10)

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-08
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 52 SFTRKCAKLVKEQRARFYIMRRCVTMLICWHNYSD 87
          +FT KC  LVKEQRAR YI+RRC TML CW+ + D
Sbjct: 13 AFTSKCVSLVKEQRARLYILRRCATMLCCWYIHGD 47

[Close]
BLAST of Carg00258 vs. TrEMBL
Match: tr|A0A1S3CF72|A0A1S3CF72_CUCME (uncharacterized protein LOC103500229 OS=Cucumis melo OX=3656 GN=LOC103500229 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-28
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 22 WKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRKCAKLVKEQRARFYIMRRCVTMLICW 81
          WKLPKKGAPAR+RSSSSSCPLMRNSS+RRCSFTRKCAKLVKEQRARFYIMRRCVTMLICW
Sbjct: 24 WKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRKCAKLVKEQRARFYIMRRCVTMLICW 83

Query: 82 HNYSDS 88
          HNY+DS
Sbjct: 84 HNYNDS 89

[Close]
BLAST of Carg00258 vs. TrEMBL
Match: tr|A0A0A0KQA4|A0A0A0KQA4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182670 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-28
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 22 WKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRKCAKLVKEQRARFYIMRRCVTMLICW 81
          WKLPKKGAPAR+RSSSSSCPLMRNSS+RRCSFTRKCAKLVKEQRARFYIMRRCVTMLICW
Sbjct: 26 WKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRKCAKLVKEQRARFYIMRRCVTMLICW 85

Query: 82 HNYSDS 88
          HNY+DS
Sbjct: 86 HNYNDS 91

[Close]
BLAST of Carg00258 vs. TrEMBL
Match: tr|A0A2C9VKL2|A0A2C9VKL2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G117800 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-19
Identity = 52/66 (78.79%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 22 WKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRKCAKLVKEQRARFYIMRRCVTMLICW 81
          WKL KK   +RS S SSS P M+NSS+RRCSFTRKCA+LVKEQRARFYIMRRCVTMLICW
Sbjct: 21 WKLSKKEGSSRS-SRSSSSPFMKNSSQRRCSFTRKCARLVKEQRARFYIMRRCVTMLICW 80

Query: 82 HNYSDS 88
           +YSDS
Sbjct: 81 RDYSDS 85

[Close]
BLAST of Carg00258 vs. TrEMBL
Match: tr|B9HMJ7|B9HMJ7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G057800v3 PE=4 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 3.9e-19
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 0 

Query: 22 WKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRKCAKLVKEQRARFYIMRRCVTMLICW 81
          WKL KK   +RSRSS+SS  LM+NSS+RRCSFTRKCA+LVKEQRARFYIMRRCVTMLICW
Sbjct: 21 WKLTKKEGSSRSRSSTSS--LMKNSSQRRCSFTRKCARLVKEQRARFYIMRRCVTMLICW 80

Query: 82 HNYSDS 88
           +Y+D+
Sbjct: 81 RDYNDA 84

[Close]
BLAST of Carg00258 vs. TrEMBL
Match: tr|F6HNW1|F6HNW1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0019g01890 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.7e-19
Identity = 52/66 (78.79%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 22 WKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRKCAKLVKEQRARFYIMRRCVTMLICW 81
          WKL KK     SRS SS+ PLMRNSS+RRCSFTRKCA LVKEQRARFYI+RRCVTMLICW
Sbjct: 21 WKLSKKEG---SRSRSSTSPLMRNSSQRRCSFTRKCASLVKEQRARFYIVRRCVTMLICW 80

Query: 82 HNYSDS 88
            YSDS
Sbjct: 81 REYSDS 83

The following BLAST results are available for this feature:
BLAST of Carg00258 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008461687.12.4e-2895.45PREDICTED: uncharacterized protein LOC103500229 [Cucumis melo][more]
KGN50562.12.4e-2895.45hypothetical protein Csa_5G182670 [Cucumis sativus][more]
XP_022139156.11.4e-2390.91uncharacterized protein LOC111010130 [Momordica charantia][more]
OAY46117.13.5e-1978.79hypothetical protein MANES_07G117800 [Manihot esculenta][more]
PNT22972.15.9e-1977.27hypothetical protein POPTR_008G057800v3 [Populus trichocarpa][more]
BLAST of Carg00258 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G39705.13.9e-1766.67ROTUNDIFOLIA like 8[more]
AT5G59510.11.2e-1050.98ROTUNDIFOLIA like 5[more]
AT3G55515.11.6e-1078.38ROTUNDIFOLIA like 7[more]
AT1G53708.12.0e-0868.57ROTUNDIFOLIA like 9[more]
AT3G14362.12.6e-0865.71ROTUNDIFOLIA like 10[more]
BLAST of Carg00258 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg00258 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CF72|A0A1S3CF72_CUCME1.6e-2895.45uncharacterized protein LOC103500229 OS=Cucumis melo OX=3656 GN=LOC103500229 PE=... [more]
tr|A0A0A0KQA4|A0A0A0KQA4_CUCSA1.6e-2895.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182670 PE=4 SV=1[more]
tr|A0A2C9VKL2|A0A2C9VKL2_MANES2.3e-1978.79Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G117800 PE=4 SV=... [more]
tr|B9HMJ7|B9HMJ7_POPTR3.9e-1977.27Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G057800v3 PE=... [more]
tr|F6HNW1|F6HNW1_VITVI8.7e-1978.79Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0019g01890 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012552DVL
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00258-RACarg00258-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012552DVLPFAMPF08137DVLcoord: 62..80
e-value: 2.1E-12
score: 46.5
NoneNo IPR availablePANTHERPTHR33102FAMILY NOT NAMEDcoord: 10..87
NoneNo IPR availablePANTHERPTHR33102:SF9DVL11-RELATEDcoord: 10..87

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg00258Cla004000Watermelon (97103) v1carwmB0663
Carg00258Csa5G182670Cucumber (Chinese Long) v2carcuB0694
Carg00258MELO3C023874Melon (DHL92) v3.5.1carmeB0660
Carg00258ClCG07G003480Watermelon (Charleston Gray)carwcgB0651
Carg00258CSPI05G09770Wild cucumber (PI 183967)carcpiB0706
Carg00258Cucsa.165200Cucumber (Gy14) v1carcgyB0746
Carg00258CmaCh04G002060Cucurbita maxima (Rimu)carcmaB0949
Carg00258CmaCh04G011760Cucurbita maxima (Rimu)carcmaB0948
Carg00258CmaCh15G003780Cucurbita maxima (Rimu)carcmaB0942
Carg00258CmoCh04G012470Cucurbita moschata (Rifu)carcmoB0923
Carg00258CmoCh15G003890Cucurbita moschata (Rifu)carcmoB0916
Carg00258CmoCh04G002070Cucurbita moschata (Rifu)carcmoB0924
Carg00258Lsi04G008930Bottle gourd (USVL1VR-Ls)carlsiB608
Carg00258Cp4.1LG05g09300Cucurbita pepo (Zucchini)carcpeB0946
Carg00258Cp4.1LG01g10710Cucurbita pepo (Zucchini)carcpeB0938
Carg00258CsGy5G007120Cucumber (Gy14) v2carcgybB0670
Carg00258MELO3C023874.2Melon (DHL92) v3.6.1carmedB0670
Carg00258CsaV3_5G008210Cucumber (Chinese Long) v3carcucB0708
Carg00258Bhi06G000858Wax gourdcarwgoB0780
Carg00258Bhi08G000496Wax gourdcarwgoB0784
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg00258Carg18329Silver-seed gourdcarcarB099
Carg00258Carg02341Silver-seed gourdcarcarB303
The following block(s) are covering this gene:
GeneOrganismBlock
Carg00258Wax gourdcarwgoB0782
Carg00258Silver-seed gourdcarcarB360
Carg00258Cucurbita maxima (Rimu)carcmaB0940
Carg00258Cucurbita pepo (Zucchini)carcpeB0939
Carg00258Watermelon (97103) v2carwmbB0693
Carg00258Watermelon (97103) v2carwmbB0695
Carg00258Watermelon (97103) v2carwmbB0700