Carg02341 (gene) Silver-seed gourd

Overview
NameCarg02341
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRotundifolia-like protein
LocationCucurbita_argyrosperma_scaffold_007 : 1272460 .. 1272738 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCCTGGTCGGTGCTACTGCAACTGCTTCTACTGCTACTGCTACTGCCACCGATCCCTCTTTCTACTTCGATGACAAATGGAAGACGTCCAAGAAAGAGGGGTTGACCAGAACCCGCTCCTCATCATTCCCTCTCATCAAAACCTCCTCTCACAGAAGGTGCTCTTTTACTAGAAAGTGCGCTAGATTGGTCGAACAACAGAGGGCTCGATTCTACATCATGAGACGATGCGTCACCATGCTCATCTGCTGGCACGATTACACCGATTCTTGA

mRNA sequence

ATGGCTTCCCTGGTCGGTGCTACTGCAACTGCTTCTACTGCTACTGCTACTGCCACCGATCCCTCTTTCTACTTCGATGACAAATGGAAGACGTCCAAGAAAGAGGGGTTGACCAGAACCCGCTCCTCATCATTCCCTCTCATCAAAACCTCCTCTCACAGAAGGTGCTCTTTTACTAGAAAGTGCGCTAGATTGGTCGAACAACAGAGGGCTCGATTCTACATCATGAGACGATGCGTCACCATGCTCATCTGCTGGCACGATTACACCGATTCTTGA

Coding sequence (CDS)

ATGGCTTCCCTGGTCGGTGCTACTGCAACTGCTTCTACTGCTACTGCTACTGCCACCGATCCCTCTTTCTACTTCGATGACAAATGGAAGACGTCCAAGAAAGAGGGGTTGACCAGAACCCGCTCCTCATCATTCCCTCTCATCAAAACCTCCTCTCACAGAAGGTGCTCTTTTACTAGAAAGTGCGCTAGATTGGTCGAACAACAGAGGGCTCGATTCTACATCATGAGACGATGCGTCACCATGCTCATCTGCTGGCACGATTACACCGATTCTTGA

Protein sequence

MASLVGATATASTATATATDPSFYFDDKWKTSKKEGLTRTRSSSFPLIKTSSHRRCSFTRKCARLVEQQRARFYIMRRCVTMLICWHDYTDS
Homology
[Close]
BLAST of Carg02341 vs. NCBI nr
Match: XP_022938385.1 (uncharacterized protein LOC111444651 [Cucurbita moschata])

HSP 1 Score: 162.9 bits (411), Expect = 5.1e-37
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MASLVGATXXXXXXXXXXXXPSFYFDDKWKTSKKEGLTRTRSSSFPLIKTSSHRRCSFTR 60
          MASLVGATXXXXXXXXXXXXPSFYFDDKWKTSKKEGLTRTRSSSFPLIKTSSHRRCSFTR
Sbjct: 1  MASLVGATXXXXXXXXXXXXPSFYFDDKWKTSKKEGLTRTRSSSFPLIKTSSHRRCSFTR 60

Query: 61 KCARLVEQQRARFYIMRRCVTMLICWHDYTDS 93
          KCARLVEQQRARFYIMRRCVTMLICWHDYTDS
Sbjct: 61 KCARLVEQQRARFYIMRRCVTMLICWHDYTDS 92

[Close]
BLAST of Carg02341 vs. NCBI nr
Match: XP_011655374.1 (PREDICTED: uncharacterized protein LOC105435519 [Cucumis sativus] >KGN51326.1 hypothetical protein Csa_5G517730 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 2.1e-30
Identity = 82/93 (88.17%), Postives = 87/93 (93.55%), Query Frame = 0 

Query: 1  MASLVGATXXXXXXXXXXXXPSFYFDDKWKTSKKEGLTR-TRSSSFPLIKTSSHRRCSFT 60
          MAS+VGATXXXXXXXXXXXX  FYFD+KWK SKKEGL R TRSSSFP+IK SSHRRCSFT
Sbjct: 1  MASIVGATXXXXXXXXXXXXXXFYFDEKWKFSKKEGLNRSTRSSSFPIIKNSSHRRCSFT 60

Query: 61 RKCARLVEQQRARFYIMRRCVTMLICWHDYTDS 93
          RKCARLV++QRARFYIMRRCVTMLICWHDYTDS
Sbjct: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 93

[Close]
BLAST of Carg02341 vs. NCBI nr
Match: XP_007141395.1 (hypothetical protein PHAVU_008G191700g [Phaseolus vulgaris] >ESW13389.1 hypothetical protein PHAVU_008G191700g [Phaseolus vulgaris])

HSP 1 Score: 119.8 bits (299), Expect = 4.9e-24
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 0 

Query: 21  PSFYFDDKWKTSKKEGLTRTRSSSFPLIKTSSHRRCSFTRKCARLVEQQRARFYIMRRCV 80
           P+ YFD+KWK SKKEG TR+RSSS P IK SS RRC+F  KCARLV++QRARFYIMRRCV
Sbjct: 70  PTLYFDEKWKLSKKEGSTRSRSSSAPFIKNSSQRRCAFASKCARLVKEQRARFYIMRRCV 129

Query: 81  TMLICWHDYTDS 93
           TMLICW DY+DS
Sbjct: 130 TMLICWRDYSDS 141

[Close]
BLAST of Carg02341 vs. NCBI nr
Match: OAY46117.1 (hypothetical protein MANES_07G117800 [Manihot esculenta])

HSP 1 Score: 119.0 bits (297), Expect = 8.4e-24
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 0 

Query: 21 PSFYFDDKWKTSKKEGLTR-TRSSSFPLIKTSSHRRCSFTRKCARLVEQQRARFYIMRRC 80
          P FYFD KWK SKKEG +R +RSSS P +K SS RRCSFTRKCARLV++QRARFYIMRRC
Sbjct: 13 PQFYFDQKWKLSKKEGSSRSSRSSSSPFMKNSSQRRCSFTRKCARLVKEQRARFYIMRRC 72

Query: 81 VTMLICWHDYTDS 93
          VTMLICW DY+DS
Sbjct: 73 VTMLICWRDYSDS 85

[Close]
BLAST of Carg02341 vs. NCBI nr
Match: XP_017429300.1 (PREDICTED: uncharacterized protein LOC108337315 [Vigna angularis] >BAT81209.1 hypothetical protein VIGAN_03088500 [Vigna angularis var. angularis])

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 54/72 (75.00%), Postives = 62/72 (86.11%), Query Frame = 0 

Query: 21 PSFYFDDKWKTSKKEGLTRTRSSSFPLIKTSSHRRCSFTRKCARLVEQQRARFYIMRRCV 80
          P+ YFD+KWK SKKEG TR+RSS+ P IK SS RRC+F  KCARLV++QRARFYIMRRCV
Sbjct: 9  PTLYFDEKWKLSKKEGSTRSRSSTTPFIKNSSQRRCAFASKCARLVKEQRARFYIMRRCV 68

Query: 81 TMLICWHDYTDS 93
          TMLICW DY+DS
Sbjct: 69 TMLICWRDYSDS 80

[Close]
BLAST of Carg02341 vs. TAIR10
Match: AT2G39705.1 (ROTUNDIFOLIA like 8)

HSP 1 Score: 88.2 bits (217), Expect = 2.9e-18
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 0 

Query: 22 SFYFDDKWKTSKKEG----LTRTRSSSFPLIKTSSHRRCSFTRKCARLVEQQRARFYIMR 81
          S + D+KWK SKK+G    +TR+ S+S          RC+FTRKCARLV++QRARFYIMR
Sbjct: 12 SVHLDEKWKLSKKDGGASRITRSSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMR 71

Query: 82 RCVTMLICWHD-YTDS 93
          RCV MLICW D Y+DS
Sbjct: 72 RCVIMLICWRDNYSDS 87

[Close]
BLAST of Carg02341 vs. TAIR10
Match: AT3G55515.1 (ROTUNDIFOLIA like 7)

HSP 1 Score: 60.8 bits (146), Expect = 4.9e-10
Identity = 35/68 (51.47%), Postives = 41/68 (60.29%), Query Frame = 0 

Query: 32 SKKE-------GLTRTRSSSFPLIKTSSHRRCSFTRKCARLVEQQRARFYIMRRCVTMLI 91
          SKKE        L  TRSS           +  FTRKC RLV++QRARFYIMRRCV MLI
Sbjct: 13 SKKESLGDNGGALNTTRSS------RQKQGKYGFTRKCGRLVKEQRARFYIMRRCVVMLI 72

Query: 92 CWHDYTDS 93
          CW D+ ++
Sbjct: 73 CWTDHNNN 74

[Close]
BLAST of Carg02341 vs. TAIR10
Match: AT2G36985.1 (DVL family protein)

HSP 1 Score: 53.5 bits (127), Expect = 7.9e-08
Identity = 19/32 (59.38%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 57 SFTRKCARLVEQQRARFYIMRRCVTMLICWHD 89
          +F +KC+ +V++QRA+FYI+RRC+ ML+CWHD
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWHD 45

[Close]
BLAST of Carg02341 vs. TAIR10
Match: AT4G13395.1 (ROTUNDIFOLIA like 12)

HSP 1 Score: 52.8 bits (125), Expect = 1.3e-07
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 0 

Query: 42 SSSFPLIKTSSHRRCSFTRKCARLVEQQRARFYIMRRCVTMLICWHDYTDS 93
          +SS P   T  +R+  F  +C  + +QQR R YI+RRCV+ML+CWHD++ S
Sbjct: 7  NSSLP---TKPNRKTRFGDRCLLMAKQQRTRLYILRRCVSMLLCWHDHSIS 54

[Close]
BLAST of Carg02341 vs. TAIR10
Match: AT5G59510.1 (ROTUNDIFOLIA like 5)

HSP 1 Score: 51.2 bits (121), Expect = 3.9e-07
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 37  LTRTRSSSFPLIKTSSHRRCSF-----------TRKCARLVEQQRARFYIMRRCVTMLIC 90
           L+R+ S+  P + TSS  +CS            TRKC  + ++ ++RFYIM+RCV ML+C
Sbjct: 78  LSRSGSTKCP-VDTSSTSKCSISRSLSQKGASVTRKCRNMAKEHKSRFYIMKRCVLMLVC 137

[Close]
BLAST of Carg02341 vs. TrEMBL
Match: tr|A0A0A0KUB0|A0A0A0KUB0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517730 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-30
Identity = 82/93 (88.17%), Postives = 87/93 (93.55%), Query Frame = 0 

Query: 1  MASLVGATXXXXXXXXXXXXPSFYFDDKWKTSKKEGLTR-TRSSSFPLIKTSSHRRCSFT 60
          MAS+VGATXXXXXXXXXXXX  FYFD+KWK SKKEGL R TRSSSFP+IK SSHRRCSFT
Sbjct: 1  MASIVGATXXXXXXXXXXXXXXFYFDEKWKFSKKEGLNRSTRSSSFPIIKNSSHRRCSFT 60

Query: 61 RKCARLVEQQRARFYIMRRCVTMLICWHDYTDS 93
          RKCARLV++QRARFYIMRRCVTMLICWHDYTDS
Sbjct: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 93

[Close]
BLAST of Carg02341 vs. TrEMBL
Match: tr|V7B6F3|V7B6F3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G191700g PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.3e-24
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 0 

Query: 21  PSFYFDDKWKTSKKEGLTRTRSSSFPLIKTSSHRRCSFTRKCARLVEQQRARFYIMRRCV 80
           P+ YFD+KWK SKKEG TR+RSSS P IK SS RRC+F  KCARLV++QRARFYIMRRCV
Sbjct: 70  PTLYFDEKWKLSKKEGSTRSRSSSAPFIKNSSQRRCAFASKCARLVKEQRARFYIMRRCV 129

Query: 81  TMLICWHDYTDS 93
           TMLICW DY+DS
Sbjct: 130 TMLICWRDYSDS 141

[Close]
BLAST of Carg02341 vs. TrEMBL
Match: tr|A0A2C9VKL2|A0A2C9VKL2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G117800 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.6e-24
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 0 

Query: 21 PSFYFDDKWKTSKKEGLTR-TRSSSFPLIKTSSHRRCSFTRKCARLVEQQRARFYIMRRC 80
          P FYFD KWK SKKEG +R +RSSS P +K SS RRCSFTRKCARLV++QRARFYIMRRC
Sbjct: 13 PQFYFDQKWKLSKKEGSSRSSRSSSSPFMKNSSQRRCSFTRKCARLVKEQRARFYIMRRC 72

Query: 81 VTMLICWHDYTDS 93
          VTMLICW DY+DS
Sbjct: 73 VTMLICWRDYSDS 85

[Close]
BLAST of Carg02341 vs. TrEMBL
Match: tr|A0A0S3RKU3|A0A0S3RKU3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G088500 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 7.3e-24
Identity = 54/72 (75.00%), Postives = 62/72 (86.11%), Query Frame = 0 

Query: 21 PSFYFDDKWKTSKKEGLTRTRSSSFPLIKTSSHRRCSFTRKCARLVEQQRARFYIMRRCV 80
          P+ YFD+KWK SKKEG TR+RSS+ P IK SS RRC+F  KCARLV++QRARFYIMRRCV
Sbjct: 9  PTLYFDEKWKLSKKEGSTRSRSSTTPFIKNSSQRRCAFASKCARLVKEQRARFYIMRRCV 68

Query: 81 TMLICWHDYTDS 93
          TMLICW DY+DS
Sbjct: 69 TMLICWRDYSDS 80

[Close]
BLAST of Carg02341 vs. TrEMBL
Match: tr|B9HTG9|B9HTG9_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G201700v3 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 7.3e-24
Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 21 PSFYFDDKWKTSKKEGLTRTRSSSFPLIKTSSHRRCSFTRKCARLVEQQRARFYIMRRCV 80
          P FYFD+KWK SKKEG +R+RSS+  L+K SS RRCSFTRKCARLV++QRARFYI+RRCV
Sbjct: 13 PQFYFDEKWKLSKKEGSSRSRSSTSSLMKDSSQRRCSFTRKCARLVKEQRARFYIVRRCV 72

Query: 81 TMLICWHDYTDS 93
          TMLICW DY+D+
Sbjct: 73 TMLICWRDYSDA 84

The following BLAST results are available for this feature:
BLAST of Carg02341 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022938385.15.1e-37100.00uncharacterized protein LOC111444651 [Cucurbita moschata][more]
XP_011655374.12.1e-3088.17PREDICTED: uncharacterized protein LOC105435519 [Cucumis sativus] >KGN51326.1 hy... [more]
XP_007141395.14.9e-2476.39hypothetical protein PHAVU_008G191700g [Phaseolus vulgaris] >ESW13389.1 hypothet... [more]
OAY46117.18.4e-2478.08hypothetical protein MANES_07G117800 [Manihot esculenta][more]
XP_017429300.11.1e-2375.00PREDICTED: uncharacterized protein LOC108337315 [Vigna angularis] >BAT81209.1 hy... [more]
BLAST of Carg02341 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G39705.12.9e-1859.21ROTUNDIFOLIA like 8[more]
AT3G55515.14.9e-1051.47ROTUNDIFOLIA like 7[more]
AT2G36985.17.9e-0859.38DVL family protein[more]
AT4G13395.11.3e-0747.06ROTUNDIFOLIA like 12[more]
AT5G59510.13.9e-0740.63ROTUNDIFOLIA like 5[more]
BLAST of Carg02341 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg02341 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KUB0|A0A0A0KUB0_CUCSA1.4e-3088.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517730 PE=4 SV=1[more]
tr|V7B6F3|V7B6F3_PHAVU3.3e-2476.39Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G191700g PE=4 ... [more]
tr|A0A2C9VKL2|A0A2C9VKL2_MANES5.6e-2478.08Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G117800 PE=4 SV=... [more]
tr|A0A0S3RKU3|A0A0S3RKU3_PHAAN7.3e-2475.00Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G... [more]
tr|B9HTG9|B9HTG9_POPTR7.3e-2475.00Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G201700v3 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012552DVL
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02341-RACarg02341-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012552DVLPFAMPF08137DVLcoord: 68..85
e-value: 1.2E-10
score: 40.9
NoneNo IPR availablePANTHERPTHR33102FAMILY NOT NAMEDcoord: 20..92
NoneNo IPR availablePANTHERPTHR33102:SF9DVL11-RELATEDcoord: 20..92

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg02341Cla004000Watermelon (97103) v1carwmB0253
Carg02341Csa5G517730Cucumber (Chinese Long) v2carcuB0294
Carg02341Csa5G182670Cucumber (Chinese Long) v2carcuB0296
Carg02341MELO3C023874Melon (DHL92) v3.5.1carmeB0264
Carg02341MELO3C021616Melon (DHL92) v3.5.1carmeB0260
Carg02341ClCG09G019600Watermelon (Charleston Gray)carwcgB0249
Carg02341ClCG07G003480Watermelon (Charleston Gray)carwcgB0261
Carg02341CSPI05G17870Wild cucumber (PI 183967)carcpiB0298
Carg02341CSPI05G09770Wild cucumber (PI 183967)carcpiB0300
Carg02341Cucsa.165200Cucumber (Gy14) v1carcgyB0312
Carg02341Cucsa.010940Cucumber (Gy14) v1carcgyB0315
Carg02341CmaCh04G002060Cucurbita maxima (Rimu)carcmaB0371
Carg02341CmaCh15G003780Cucurbita maxima (Rimu)carcmaB0362
Carg02341CmaCh04G011760Cucurbita maxima (Rimu)carcmaB0373
Carg02341CmoCh15G003890Cucurbita moschata (Rifu)carcmoB0362
Carg02341CmoCh04G002070Cucurbita moschata (Rifu)carcmoB0369
Carg02341CmoCh04G027830Cucurbita moschata (Rifu)carcmoB0370
Carg02341CmoCh04G012470Cucurbita moschata (Rifu)carcmoB0368
Carg02341Lsi04G008930Bottle gourd (USVL1VR-Ls)carlsiB241
Carg02341Cp4.1LG01g23760Cucurbita pepo (Zucchini)carcpeB0374
Carg02341Cp4.1LG01g10710Cucurbita pepo (Zucchini)carcpeB0372
Carg02341CsGy5G017550Cucumber (Gy14) v2carcgybB0281
Carg02341MELO3C023874.2Melon (DHL92) v3.6.1carmedB0275
Carg02341MELO3C021616.2Melon (DHL92) v3.6.1carmedB0270
Carg02341CsaV3_5G026780Cucumber (Chinese Long) v3carcucB0297
Carg02341Cla97C09G181050Watermelon (97103) v2carwmbB0279
Carg02341Bhi06G000517Wax gourdcarwgoB0339
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg02341Carg00258Silver-seed gourdcarcarB303
Carg02341Carg04487Silver-seed gourdcarcarB306
The following block(s) are covering this gene:
GeneOrganismBlock
Carg02341Silver-seed gourdcarcarB310
Carg02341Cucurbita maxima (Rimu)carcmaB0374
Carg02341Cucurbita pepo (Zucchini)carcpeB0366
Carg02341Bottle gourd (USVL1VR-Ls)carlsiB232
Carg02341Watermelon (97103) v1carwmB0246