Cla97C09G181050 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C09G181050
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Rotundifolia-like protein
Location	Cla97Chr09 : 34554727 .. 34555002 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCTGGTCGCTGCAACTGCAACTACTTCAACTGCTACTGCCAGTGATCCTCCTCTTTACTTCGATGAGAAATGGAAGATGTCCAAGAAAGAAAGCTTAACCAGATCAACCCGCCCTTCTTCTTTCCCTATCATGAAAAATTCCTCTCATAGAAGATGTTCTTTCACAAGGAAGTGCGCTAGATTGGTCAAAGAACAGAGAGCTCGATTCTACATCATGAGGCGATGCGTCACCATGCTCATCTGTTGGCACGATTACACCGATTCTTGA

mRNA sequence

ATGGCTTCCCTGGTCGCTGCAACTGCAACTACTTCAACTGCTACTGCCAGTGATCCTCCTCTTTACTTCGATGAGAAATGGAAGATGTCCAAGAAAGAAAGCTTAACCAGATCAACCCGCCCTTCTTCTTTCCCTATCATGAAAAATTCCTCTCATAGAAGATGTTCTTTCACAAGGAAGTGCGCTAGATTGGTCAAAGAACAGAGAGCTCGATTCTACATCATGAGGCGATGCGTCACCATGCTCATCTGTTGGCACGATTACACCGATTCTTGA

Coding sequence (CDS)

ATGGCTTCCCTGGTCGCTGCAACTGCAACTACTTCAACTGCTACTGCCAGTGATCCTCCTCTTTACTTCGATGAGAAATGGAAGATGTCCAAGAAAGAAAGCTTAACCAGATCAACCCGCCCTTCTTCTTTCCCTATCATGAAAAATTCCTCTCATAGAAGATGTTCTTTCACAAGGAAGTGCGCTAGATTGGTCAAAGAACAGAGAGCTCGATTCTACATCATGAGGCGATGCGTCACCATGCTCATCTGTTGGCACGATTACACCGATTCTTGA

Protein sequence

MASLVAATATTSTATASDPPLYFDEKWKMSKKESLTRSTRPSSFPIMKNSSHRRCSFTRKCARLVKEQRARFYIMRRCVTMLICWHDYTDS

Homology

[Close]

BLAST of Cla97C09G181050 vs. NCBI nr
Match: XP_011655374.1 (PREDICTED: uncharacterized protein LOC105435519 [Cucumis sativus] >KGN51326.1 hypothetical protein Csa_5G517730 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 3.9e-29
Identity = 71/93 (76.34%), Postives = 73/93 (78.49%), Query Frame = 0


Query: 1  MASLVAAT--ATTSTATASDPPLYFDEKWKMSKKESLTRSTRPSSFPIMKNSSHRRCSFT 60
          MAS+V AT               YFDEKWK SKKE L RSTR SSFPI+KNSSHRRCSFT
Sbjct: 1  MASIVGATXXXXXXXXXXXXXXFYFDEKWKFSKKEGLNRSTRSSSFPIIKNSSHRRCSFT 60

Query: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 92
          RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS
Sbjct: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 93

[Close]

BLAST of Cla97C09G181050 vs. NCBI nr
Match: XP_022938385.1 (uncharacterized protein LOC111444651 [Cucurbita moschata])

HSP 1 Score: 129.0 bits (323), Expect = 8.0e-27
Identity = 68/93 (73.12%), Postives = 73/93 (78.49%), Query Frame = 0


Query: 1  MASLVAAT--ATTSTATASDPPLYFDEKWKMSKKESLTRSTRPSSFPIMKNSSHRRCSFT 60
          MASLV AT            P  YFD+KWK SKKE LTR TR SSFP++K SSHRRCSFT
Sbjct: 1  MASLVGATXXXXXXXXXXXXPSFYFDDKWKTSKKEGLTR-TRSSSFPLIKTSSHRRCSFT 60

Query: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 92
          RKCARLV++QRARFYIMRRCVTMLICWHDYTDS
Sbjct: 61 RKCARLVEQQRARFYIMRRCVTMLICWHDYTDS 92

[Close]

BLAST of Cla97C09G181050 vs. NCBI nr
Match: OAY46117.1 (hypothetical protein MANES_07G117800 [Manihot esculenta])

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 61/82 (74.39%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 10 TTSTATASDPPLYFDEKWKMSKKESLTRSTRPSSFPIMKNSSHRRCSFTRKCARLVKEQR 69
          T S ++++ P  YFD+KWK+SKKE  +RS+R SS P MKNSS RRCSFTRKCARLVKEQR
Sbjct: 4  TLSHSSSAPPQFYFDQKWKLSKKEGSSRSSRSSSSPFMKNSSQRRCSFTRKCARLVKEQR 63

Query: 70 ARFYIMRRCVTMLICWHDYTDS 92
          ARFYIMRRCVTMLICW DY+DS
Sbjct: 64 ARFYIMRRCVTMLICWRDYSDS 85

[Close]

BLAST of Cla97C09G181050 vs. NCBI nr
Match: OAY38611.1 (hypothetical protein MANES_10G028700 [Manihot esculenta])

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-25
Identity = 63/84 (75.00%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 9  ATTSTATASDPP-LYFDEKWKMSKKESLTRSTRPSSFPIMKNSSHRRCSFTRKCARLVKE 68
          ATT T +AS PP  YF+EKWK+SKKE  +RS+R S+ P+MKNSS RR SFTRKCARLVKE
Sbjct: 2  ATTLTHSASAPPQFYFNEKWKLSKKEGSSRSSRSSTSPLMKNSSQRRSSFTRKCARLVKE 61

Query: 69 QRARFYIMRRCVTMLICWHDYTDS 92
          QRARFYIMRRCV MLICW DY+DS
Sbjct: 62 QRARFYIMRRCVAMLICWRDYSDS 85

[Close]

BLAST of Cla97C09G181050 vs. NCBI nr
Match: XP_022139156.1 (uncharacterized protein LOC111010130 [Momordica charantia])

HSP 1 Score: 122.9 bits (307), Expect = 5.8e-25
Identity = 56/80 (70.00%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 12 STATASDPPLYFDEKWKMSKKESLTRSTRPSSFPIMKNSSHRRCSFTRKCARLVKEQRAR 71
          S ++A  PP Y +EKWK+SKKE+  RS   +S+P+M+NSS RRCSFTRKCA+LVKEQRAR
Sbjct: 3  SVSSAVAPPFYLEEKWKLSKKEAPARSRSSASYPLMRNSSERRCSFTRKCAKLVKEQRAR 62

Query: 72 FYIMRRCVTMLICWHDYTDS 92
          FYIMRRCVTMLICWH+++DS
Sbjct: 63 FYIMRRCVTMLICWHNHSDS 82

[Close]

BLAST of Cla97C09G181050 vs. TrEMBL
Match: tr|A0A0A0KUB0|A0A0A0KUB0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517730 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.5e-29
Identity = 71/93 (76.34%), Postives = 73/93 (78.49%), Query Frame = 0


Query: 1  MASLVAAT--ATTSTATASDPPLYFDEKWKMSKKESLTRSTRPSSFPIMKNSSHRRCSFT 60
          MAS+V AT               YFDEKWK SKKE L RSTR SSFPI+KNSSHRRCSFT
Sbjct: 1  MASIVGATXXXXXXXXXXXXXXFYFDEKWKFSKKEGLNRSTRSSSFPIIKNSSHRRCSFT 60

Query: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 92
          RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS
Sbjct: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 93

[Close]

BLAST of Cla97C09G181050 vs. TrEMBL
Match: tr|A0A2C9VKL2|A0A2C9VKL2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G117800 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 9.1e-27
Identity = 61/82 (74.39%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 10 TTSTATASDPPLYFDEKWKMSKKESLTRSTRPSSFPIMKNSSHRRCSFTRKCARLVKEQR 69
          T S ++++ P  YFD+KWK+SKKE  +RS+R SS P MKNSS RRCSFTRKCARLVKEQR
Sbjct: 4  TLSHSSSAPPQFYFDQKWKLSKKEGSSRSSRSSSSPFMKNSSQRRCSFTRKCARLVKEQR 63

Query: 70 ARFYIMRRCVTMLICWHDYTDS 92
          ARFYIMRRCVTMLICW DY+DS
Sbjct: 64 ARFYIMRRCVTMLICWRDYSDS 85

[Close]

BLAST of Cla97C09G181050 vs. TrEMBL
Match: tr|A0A2C9V2X7|A0A2C9V2X7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G028700 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-25
Identity = 63/84 (75.00%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 9  ATTSTATASDPP-LYFDEKWKMSKKESLTRSTRPSSFPIMKNSSHRRCSFTRKCARLVKE 68
          ATT T +AS PP  YF+EKWK+SKKE  +RS+R S+ P+MKNSS RR SFTRKCARLVKE
Sbjct: 2  ATTLTHSASAPPQFYFNEKWKLSKKEGSSRSSRSSTSPLMKNSSQRRSSFTRKCARLVKE 61

Query: 69 QRARFYIMRRCVTMLICWHDYTDS 92
          QRARFYIMRRCV MLICW DY+DS
Sbjct: 62 QRARFYIMRRCVAMLICWRDYSDS 85

[Close]

BLAST of Cla97C09G181050 vs. TrEMBL
Match: tr|B9T005|B9T005_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0040480 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.5e-25
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 9  ATTSTATASDPP-LYFDEKWKMSKKESLTRSTRPSSFPIMKN---SSHRRCSFTRKCARL 68
          A++ T +AS PP  YFDEKWK+SKKE  +RS R S+ P+MKN   SS RRCSFTRKCARL
Sbjct: 2  ASSLTHSASAPPQFYFDEKWKLSKKEGSSRSVRSSTSPLMKNSSSSSQRRCSFTRKCARL 61

Query: 69 VKEQRARFYIMRRCVTMLICWHDYTDS 92
          VKEQRARFYI+RRCVTMLICW DY+DS
Sbjct: 62 VKEQRARFYIVRRCVTMLICWRDYSDS 88

[Close]

BLAST of Cla97C09G181050 vs. TrEMBL
Match: tr|V7B6F3|V7B6F3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G191700g PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.5e-24
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 12  STATASDPPLYFDEKWKMSKKESLTRSTRPSSFPIMKNSSHRRCSFTRKCARLVKEQRAR 71
           +++ ++ P LYFDEKWK+SKKE  TRS R SS P +KNSS RRC+F  KCARLVKEQRAR
Sbjct: 63  ASSVSTTPTLYFDEKWKLSKKEGSTRS-RSSSAPFIKNSSQRRCAFASKCARLVKEQRAR 122

Query: 72  FYIMRRCVTMLICWHDYTDS 92
           FYIMRRCVTMLICW DY+DS
Sbjct: 123 FYIMRRCVTMLICWRDYSDS 141

[Close]

BLAST of Cla97C09G181050 vs. TAIR10
Match: AT2G39705.1 (ROTUNDIFOLIA like 8)

HSP 1 Score: 87.0 bits (214), Expect = 6.3e-18
Identity = 51/88 (57.95%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 9  ATTSTATASDPPLYFDEKWKMSKKES----LTRSTRPSSFPIMKNSSHRRCSFTRKCARL 68
          A++S+ T S   ++ DEKWK+SKK+     +TRS+  SS          RC+FTRKCARL
Sbjct: 2  ASSSSLTRSG-SVHLDEKWKLSKKDGGASRITRSSSTSS-SSFNGKKQGRCAFTRKCARL 61

Query: 69 VKEQRARFYIMRRCVTMLICWHD-YTDS 92
          VKEQRARFYIMRRCV MLICW D Y+DS
Sbjct: 62 VKEQRARFYIMRRCVIMLICWRDNYSDS 87

[Close]

BLAST of Cla97C09G181050 vs. TAIR10
Match: AT3G55515.1 (ROTUNDIFOLIA like 7)

HSP 1 Score: 66.6 bits (161), Expect = 8.9e-12
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 28 KMSKKESLTRSTRPSSFPIMKNSSHRRCSFTRKCARLVKEQRARFYIMRRCVTMLICWHD 87
          ++SKKESL  +    +          +  FTRKC RLVKEQRARFYIMRRCV MLICW D
Sbjct: 11 QLSKKESLGDNGGALNTTRSSRQKQGKYGFTRKCGRLVKEQRARFYIMRRCVVMLICWTD 70

Query: 88 YTDS 92
          + ++
Sbjct: 71 HNNN 74

[Close]

BLAST of Cla97C09G181050 vs. TAIR10
Match: AT2G36985.1 (DVL family protein)

HSP 1 Score: 55.1 bits (131), Expect = 2.7e-08
Identity = 20/32 (62.50%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 56 SFTRKCARLVKEQRARFYIMRRCVTMLICWHD 88
          +F +KC+ +VK+QRA+FYI+RRC+ ML+CWHD
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWHD 45

[Close]

BLAST of Cla97C09G181050 vs. TAIR10
Match: AT5G59510.1 (ROTUNDIFOLIA like 5)

HSP 1 Score: 54.3 bits (129), Expect = 4.6e-08
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 42  SSFPIMKNSSHRRCSFTRKCARLVKEQRARFYIMRRCVTMLICWHDY 89
           S   I ++ S +  S TRKC  + KE ++RFYIM+RCV ML+CWH +
Sbjct: 94  SKCSISRSLSQKGASVTRKCRNMAKEHKSRFYIMKRCVLMLVCWHKH 140

[Close]

BLAST of Cla97C09G181050 vs. TAIR10
Match: AT3G14362.1 (ROTUNDIFOLIA like 10)

HSP 1 Score: 53.5 bits (127), Expect = 7.8e-08
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 47 MKNSSHRRCSFTRKCARLVKEQRARFYIMRRCVTMLICWHDYTD 91
          +K   ++  +FT KC  LVKEQRAR YI+RRC TML CW+ + D
Sbjct: 4  LKRKFNKGHAFTSKCVSLVKEQRARLYILRRCATMLCCWYIHGD 47

The following BLAST results are available for this feature:

BLAST of Cla97C09G181050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655374.1	3.9e-29	76.34	PREDICTED: uncharacterized protein LOC105435519 [Cucumis sativus] >KGN51326.1 hy...	[more]
XP_022938385.1	8.0e-27	73.12	uncharacterized protein LOC111444651 [Cucurbita moschata]	[more]
OAY46117.1	1.4e-26	74.39	hypothetical protein MANES_07G117800 [Manihot esculenta]	[more]
OAY38611.1	2.0e-25	75.00	hypothetical protein MANES_10G028700 [Manihot esculenta]	[more]
XP_022139156.1	5.8e-25	70.00	uncharacterized protein LOC111010130 [Momordica charantia]	[more]

BLAST of Cla97C09G181050 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KUB0\|A0A0A0KUB0_CUCSA	2.5e-29	76.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517730 PE=4 SV=1	[more]
tr\|A0A2C9VKL2\|A0A2C9VKL2_MANES	9.1e-27	74.39	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G117800 PE=4 SV=...	[more]
tr\|A0A2C9V2X7\|A0A2C9V2X7_MANES	1.3e-25	75.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G028700 PE=4 SV=...	[more]
tr\|B9T005\|B9T005_RICCO	8.5e-25	72.41	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0040480 PE=4 SV=1	[more]
tr\|V7B6F3\|V7B6F3_PHAVU	5.5e-24	72.50	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G191700g PE=4 ...	[more]

BLAST of Cla97C09G181050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C09G181050 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G39705.1	6.3e-18	57.95	ROTUNDIFOLIA like 8	[more]
AT3G55515.1	8.9e-12	53.13	ROTUNDIFOLIA like 7	[more]
AT2G36985.1	2.7e-08	62.50	DVL family protein	[more]
AT5G59510.1	4.6e-08	48.94	ROTUNDIFOLIA like 5	[more]
AT3G14362.1	7.8e-08	54.55	ROTUNDIFOLIA like 10	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012552	DVL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0048367	shoot system development
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G181050.1	Cla97C09G181050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 66..84 e-value: 2.3E-12 score: 46.4
None	No IPR available	PANTHER	PTHR33102:SF9	DVL11-RELATED	coord: 16..91
None	No IPR available	PANTHER	PTHR33102	FAMILY NOT NAMED	coord: 16..91

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C09G181050	Csa5G517730	Cucumber (Chinese Long) v2	cuwmbB407
Cla97C09G181050	MELO3C021616	Melon (DHL92) v3.5.1	mewmbB038
Cla97C09G181050	MELO3C023874	Melon (DHL92) v3.5.1	mewmbB076
Cla97C09G181050	ClCG09G019600	Watermelon (Charleston Gray)	wcgwmbB035
Cla97C09G181050	CSPI05G17870	Wild cucumber (PI 183967)	cpiwmbB428
Cla97C09G181050	Cucsa.010940	Cucumber (Gy14) v1	cgywmbB348
Cla97C09G181050	CmaCh15G003780	Cucurbita maxima (Rimu)	cmawmbB322
Cla97C09G181050	CmaCh04G002060	Cucurbita maxima (Rimu)	cmawmbB794
Cla97C09G181050	CmoCh04G002070	Cucurbita moschata (Rifu)	cmowmbB768
Cla97C09G181050	CmoCh15G003890	Cucurbita moschata (Rifu)	cmowmbB305
Cla97C09G181050	CmoCh04G027830	Cucurbita moschata (Rifu)	cmowmbB772
Cla97C09G181050	CsGy5G017550	Cucumber (Gy14) v2	cgybwmbB389
Cla97C09G181050	MELO3C021616.2	Melon (DHL92) v3.6.1	medwmbB034
Cla97C09G181050	MELO3C023874.2	Melon (DHL92) v3.6.1	medwmbB071
Cla97C09G181050	Carg02341	Silver-seed gourd	carwmbB0279
Cla97C09G181050	Carg04487	Silver-seed gourd	carwmbB0714
Cla97C09G181050	CsaV3_5G026780	Cucumber (Chinese Long) v3	cucwmbB424
Cla97C09G181050	Bhi06G000517	Wax gourd	wgowmbB151

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C09G181050	Watermelon (97103) v2	wmbwmbB170
Cla97C09G181050	Cucurbita maxima (Rimu)	cmawmbB797
Cla97C09G181050	Bottle gourd (USVL1VR-Ls)	lsiwmbB208
Cla97C09G181050	Watermelon (97103) v1	wmwmbB042