CmoCh04G027830 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G027830
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Rotundifolia-like protein
Location	Cmo_Chr04 : 20060516 .. 20060788 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTCTGGTCGGTGCTTCTGCAACTGCTTCGAATCCTACTGCCAACGATCCCCCTTTTTACTTCGACGAGAAATGGAGGCTGTCCAAGAAAGAAGGCTTAACCAGAACCCGCTCCTCCTCTTTCCCTCTCGTAAAAAACTCCTCTCTTAGAAGGTGTTCTTTCACTAGAAAGTGTGCCAGATTGGTCAAAGAACAGAGGGCTCGATTCTACATCATGAGACGATGCGTCACCATGCTCATCTGCTGGCACGATTACACCGATTCTTGA

mRNA sequence

ATGGCTGCTCTGGTCGGTGCTTCTGCAACTGCTTCGAATCCTACTGCCAACGATCCCCCTTTTTACTTCGACGAGAAATGGAGGCTGTCCAAGAAAGAAGGCTTAACCAGAACCCGCTCCTCCTCTTTCCCTCTCGTAAAAAACTCCTCTCTTAGAAGGTGTTCTTTCACTAGAAAGTGTGCCAGATTGGTCAAAGAACAGAGGGCTCGATTCTACATCATGAGACGATGCGTCACCATGCTCATCTGCTGGCACGATTACACCGATTCTTGA

Coding sequence (CDS)

ATGGCTGCTCTGGTCGGTGCTTCTGCAACTGCTTCGAATCCTACTGCCAACGATCCCCCTTTTTACTTCGACGAGAAATGGAGGCTGTCCAAGAAAGAAGGCTTAACCAGAACCCGCTCCTCCTCTTTCCCTCTCGTAAAAAACTCCTCTCTTAGAAGGTGTTCTTTCACTAGAAAGTGTGCCAGATTGGTCAAAGAACAGAGGGCTCGATTCTACATCATGAGACGATGCGTCACCATGCTCATCTGCTGGCACGATTACACCGATTCTTGA

Homology

[Close]

BLAST of CmoCh04G027830 vs. TrEMBL
Match: A0A0A0KUB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517730 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.1e-34
Identity = 76/93 (81.72%), Postives = 82/93 (88.17%), Query Frame = 1


Query: 1  MAALVGASATA--SNPTANDPPFYFDEKWRLSKKEGLTR-TRSSSFPLVKNSSLRRCSFT 60
          MA++VGA+AT   S  T  DPPFYFDEKW+ SKKEGL R TRSSSFP++KNSS RRCSFT
Sbjct: 1  MASIVGATATTTTSTTTPTDPPFYFDEKWKFSKKEGLNRSTRSSSFPIIKNSSHRRCSFT 60

Query: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 91
          RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS
Sbjct: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 93

[Close]

BLAST of CmoCh04G027830 vs. TrEMBL
Match: W9R2B1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025336 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 65/91 (71.43%), Postives = 72/91 (79.12%), Query Frame = 1


Query: 9  ATASNPTANDPP-FYFDEKWRLSKKEGLTRTRSSSFPLVKNSSL--------RRCSFTRK 68
          A++     N PP FY DEKW+LSKKE L+R+RSSSFPLVKN+S         RRCSFTRK
Sbjct: 2  ASSGVVVVNPPPSFYLDEKWKLSKKESLSRSRSSSFPLVKNNSSSSSSAASRRRCSFTRK 61

Query: 69 CARLVKEQRARFYIMRRCVTMLICWHDYTDS 91
          CARLVKEQRARFYIMRRCVTMLICW DY+DS
Sbjct: 62 CARLVKEQRARFYIMRRCVTMLICWRDYSDS 92

[Close]

BLAST of CmoCh04G027830 vs. TrEMBL
Match: V7B6F3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G191700g PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.8e-26
Identity = 58/79 (73.42%), Postives = 66/79 (83.54%), Query Frame = 1


Query: 12  SNPTANDPPFYFDEKWRLSKKEGLTRTRSSSFPLVKNSSLRRCSFTRKCARLVKEQRARF 71
           ++  +  P  YFDEKW+LSKKEG TR+RSSS P +KNSS RRC+F  KCARLVKEQRARF
Sbjct: 63  ASSVSTTPTLYFDEKWKLSKKEGSTRSRSSSAPFIKNSSQRRCAFASKCARLVKEQRARF 122

Query: 72  YIMRRCVTMLICWHDYTDS 91
           YIMRRCVTMLICW DY+DS
Sbjct: 123 YIMRRCVTMLICWRDYSDS 141

[Close]

BLAST of CmoCh04G027830 vs. TrEMBL
Match: B9HTG9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20930g PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.1e-26
Identity = 58/81 (71.60%), Postives = 70/81 (86.42%), Query Frame = 1


Query: 10 TASNPTANDPPFYFDEKWRLSKKEGLTRTRSSSFPLVKNSSLRRCSFTRKCARLVKEQRA 69
          T ++  +  P FYFDEKW+LSKKEG +R+RSS+  L+K+SS RRCSFTRKCARLVKEQRA
Sbjct: 4  TLTHSASEPPQFYFDEKWKLSKKEGSSRSRSSTSSLMKDSSQRRCSFTRKCARLVKEQRA 63

Query: 70 RFYIMRRCVTMLICWHDYTDS 91
          RFYI+RRCVTMLICW DY+D+
Sbjct: 64 RFYIVRRCVTMLICWRDYSDA 84

[Close]

BLAST of CmoCh04G027830 vs. TrEMBL
Match: A0A0S3RKU3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G088500 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.1e-26
Identity = 57/79 (72.15%), Postives = 66/79 (83.54%), Query Frame = 1


Query: 12 SNPTANDPPFYFDEKWRLSKKEGLTRTRSSSFPLVKNSSLRRCSFTRKCARLVKEQRARF 71
          ++  +  P  YFDEKW+LSKKEG TR+RSS+ P +KNSS RRC+F  KCARLVKEQRARF
Sbjct: 2  ASSVSTTPTLYFDEKWKLSKKEGSTRSRSSTTPFIKNSSQRRCAFASKCARLVKEQRARF 61

Query: 72 YIMRRCVTMLICWHDYTDS 91
          YIMRRCVTMLICW DY+DS
Sbjct: 62 YIMRRCVTMLICWRDYSDS 80

[Close]

BLAST of CmoCh04G027830 vs. TAIR10
Match: AT2G39705.1 (AT2G39705.1 ROTUNDIFOLIA like 8)

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-19
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 1


Query: 22 YFDEKWRLSKKEG----LTRTRSSSFPLVKNSSLRRCSFTRKCARLVKEQRARFYIMRRC 81
          + DEKW+LSKK+G    +TR+ S+S          RC+FTRKCARLVKEQRARFYIMRRC
Sbjct: 14 HLDEKWKLSKKDGGASRITRSSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRC 73

Query: 82 VTMLICWHD-YTDS 91
          V MLICW D Y+DS
Sbjct: 74 VIMLICWRDNYSDS 87

[Close]

BLAST of CmoCh04G027830 vs. TAIR10
Match: AT3G55515.1 (AT3G55515.1 ROTUNDIFOLIA like 7)

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-11
Identity = 38/70 (54.29%), Postives = 43/70 (61.43%), Query Frame = 1


Query: 28 RLSKKEGL-------TRTRSSSFPLVKNSSLRRCSFTRKCARLVKEQRARFYIMRRCVTM 87
          +LSKKE L         TRSS           +  FTRKC RLVKEQRARFYIMRRCV M
Sbjct: 11 QLSKKESLGDNGGALNTTRSS------RQKQGKYGFTRKCGRLVKEQRARFYIMRRCVVM 70

Query: 88 LICWHDYTDS 91
          LICW D+ ++
Sbjct: 71 LICWTDHNNN 74

[Close]

BLAST of CmoCh04G027830 vs. TAIR10
Match: AT2G29125.1 (AT2G29125.1 ROTUNDIFOLIA like 2)

HSP 1 Score: 58.2 bits (139), Expect = 3.1e-09
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1


Query: 38  TRSSSFPLVKNSSLRRCSFTRKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 91
           +RS S    ++SS    S T+K + L KEQ+ARFYIMRRCV ML+CWH + DS
Sbjct: 63  SRSFSRKERRSSSSSSSSITQKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 115

[Close]

BLAST of CmoCh04G027830 vs. TAIR10
Match: AT5G59510.1 (AT5G59510.1 ROTUNDIFOLIA like 5)

HSP 1 Score: 56.6 bits (135), Expect = 9.1e-09
Identity = 35/93 (37.63%), Postives = 51/93 (54.84%), Query Frame = 1


Query: 8   SATASNPTANDPPFY--FDEKWRLSKKEGLTRTRSSSFPLVKNSSLRRCSF--------- 67
           S   ++ ++++P F   F  K   SK   L+R+ S+  P V  SS  +CS          
Sbjct: 49  STKPTSYSSSEPIFRRSFSAKPTSSKSPFLSRSGSTKCP-VDTSSTSKCSISRSLSQKGA 108

Query: 68  --TRKCARLVKEQRARFYIMRRCVTMLICWHDY 88
             TRKC  + KE ++RFYIM+RCV ML+CWH +
Sbjct: 109 SVTRKCRNMAKEHKSRFYIMKRCVLMLVCWHKH 140

[Close]

BLAST of CmoCh04G027830 vs. TAIR10
Match: AT2G36985.1 (AT2G36985.1 DVL family protein)

HSP 1 Score: 54.7 bits (130), Expect = 3.5e-08
Identity = 22/41 (53.66%), Postives = 33/41 (80.49%), Query Frame = 1


Query: 47 KNSSLRRC-SFTRKCARLVKEQRARFYIMRRCVTMLICWHD 87
          +N +   C +F +KC+ +VK+QRA+FYI+RRC+ ML+CWHD
Sbjct: 5  ENGTCEPCKTFGQKCSHVVKKQRAKFYILRRCIAMLVCWHD 45

[Close]

BLAST of CmoCh04G027830 vs. NCBI nr
Match: gi|778703484|ref|XP_011655374.1| (PREDICTED: uncharacterized protein LOC105435519 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 1.5e-34
Identity = 76/93 (81.72%), Postives = 82/93 (88.17%), Query Frame = 1


Query: 1  MAALVGASATA--SNPTANDPPFYFDEKWRLSKKEGLTR-TRSSSFPLVKNSSLRRCSFT 60
          MA++VGA+AT   S  T  DPPFYFDEKW+ SKKEGL R TRSSSFP++KNSS RRCSFT
Sbjct: 1  MASIVGATATTTTSTTTPTDPPFYFDEKWKFSKKEGLNRSTRSSSFPIIKNSSHRRCSFT 60

Query: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 91
          RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS
Sbjct: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 93

[Close]

BLAST of CmoCh04G027830 vs. NCBI nr
Match: gi|703099220|ref|XP_010096589.1| (hypothetical protein L484_025336 [Morus notabilis])

HSP 1 Score: 126.7 bits (317), Expect = 2.0e-26
Identity = 65/91 (71.43%), Postives = 72/91 (79.12%), Query Frame = 1


Query: 9  ATASNPTANDPP-FYFDEKWRLSKKEGLTRTRSSSFPLVKNSSL--------RRCSFTRK 68
          A++     N PP FY DEKW+LSKKE L+R+RSSSFPLVKN+S         RRCSFTRK
Sbjct: 2  ASSGVVVVNPPPSFYLDEKWKLSKKESLSRSRSSSFPLVKNNSSSSSSAASRRRCSFTRK 61

Query: 69 CARLVKEQRARFYIMRRCVTMLICWHDYTDS 91
          CARLVKEQRARFYIMRRCVTMLICW DY+DS
Sbjct: 62 CARLVKEQRARFYIMRRCVTMLICWRDYSDS 92

[Close]

BLAST of CmoCh04G027830 vs. NCBI nr
Match: gi|694352127|ref|XP_009357749.1| (PREDICTED: uncharacterized protein LOC103948440 [Pyrus x bretschneideri])

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-26
Identity = 65/89 (73.03%), Postives = 74/89 (83.15%), Query Frame = 1


Query: 6  GASATASNPTANDPPFYFDEKWRLSKKEGLTRTR--SSSFPLVKNSSL--RRCSFTRKCA 65
          G++ATAS    + PPFYFDEKW+LSKKE  +R+   SSS  L+KNSS   RRCSF+RKCA
Sbjct: 11 GSAATASASHHHPPPFYFDEKWKLSKKEASSRSSRSSSSIHLMKNSSRSNRRCSFSRKCA 70

Query: 66 RLVKEQRARFYIMRRCVTMLICWHDYTDS 91
          RLVKEQRARFYIMRRCVTMLICWHDY+DS
Sbjct: 71 RLVKEQRARFYIMRRCVTMLICWHDYSDS 99

[Close]

BLAST of CmoCh04G027830 vs. NCBI nr
Match: gi|593489055|ref|XP_007141395.1| (hypothetical protein PHAVU_008G191700g [Phaseolus vulgaris])

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-26
Identity = 58/79 (73.42%), Postives = 66/79 (83.54%), Query Frame = 1


Query: 12  SNPTANDPPFYFDEKWRLSKKEGLTRTRSSSFPLVKNSSLRRCSFTRKCARLVKEQRARF 71
           ++  +  P  YFDEKW+LSKKEG TR+RSSS P +KNSS RRC+F  KCARLVKEQRARF
Sbjct: 63  ASSVSTTPTLYFDEKWKLSKKEGSTRSRSSSAPFIKNSSQRRCAFASKCARLVKEQRARF 122

Query: 72  YIMRRCVTMLICWHDYTDS 91
           YIMRRCVTMLICW DY+DS
Sbjct: 123 YIMRRCVTMLICWRDYSDS 141

[Close]

BLAST of CmoCh04G027830 vs. NCBI nr
Match: gi|224112731|ref|XP_002316275.1| (hypothetical protein POPTR_0010s20930g [Populus trichocarpa])

HSP 1 Score: 125.6 bits (314), Expect = 4.5e-26
Identity = 58/81 (71.60%), Postives = 70/81 (86.42%), Query Frame = 1


Query: 10 TASNPTANDPPFYFDEKWRLSKKEGLTRTRSSSFPLVKNSSLRRCSFTRKCARLVKEQRA 69
          T ++  +  P FYFDEKW+LSKKEG +R+RSS+  L+K+SS RRCSFTRKCARLVKEQRA
Sbjct: 4  TLTHSASEPPQFYFDEKWKLSKKEGSSRSRSSTSSLMKDSSQRRCSFTRKCARLVKEQRA 63

Query: 70 RFYIMRRCVTMLICWHDYTDS 91
          RFYI+RRCVTMLICW DY+D+
Sbjct: 64 RFYIVRRCVTMLICWRDYSDA 84

The following BLAST results are available for this feature:

BLAST of CmoCh04G027830 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G027830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUB0_CUCSA	1.1e-34	81.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517730 PE=4 SV=1	[more]
W9R2B1_9ROSA	1.4e-26	71.43	Uncharacterized protein OS=Morus notabilis GN=L484_025336 PE=4 SV=1	[more]
V7B6F3_PHAVU	1.8e-26	73.42	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G191700g PE=4 SV=1	[more]
B9HTG9_POPTR	3.1e-26	71.60	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20930g PE=4 SV=1	[more]
A0A0S3RKU3_PHAAN	4.1e-26	72.15	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G088500 PE=...	[more]

BLAST of CmoCh04G027830 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G39705.1	1.5e-19	63.51	ROTUNDIFOLIA like 8	[more]
AT3G55515.1	2.0e-11	54.29	ROTUNDIFOLIA like 7	[more]
AT2G29125.1	3.1e-09	54.72	ROTUNDIFOLIA like 2	[more]
AT5G59510.1	9.1e-09	37.63	ROTUNDIFOLIA like 5	[more]
AT2G36985.1	3.5e-08	53.66	DVL family protein	[more]

BLAST of CmoCh04G027830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778703484\|ref\|XP_011655374.1\|	1.5e-34	81.72	PREDICTED: uncharacterized protein LOC105435519 [Cucumis sativus]	[more]
gi\|703099220\|ref\|XP_010096589.1\|	2.0e-26	71.43	hypothetical protein L484_025336 [Morus notabilis]	[more]
gi\|694352127\|ref\|XP_009357749.1\|	2.6e-26	73.03	PREDICTED: uncharacterized protein LOC103948440 [Pyrus x bretschneideri]	[more]
gi\|593489055\|ref\|XP_007141395.1\|	2.6e-26	73.42	hypothetical protein PHAVU_008G191700g [Phaseolus vulgaris]	[more]
gi\|224112731\|ref\|XP_002316275.1\|	4.5e-26	71.60	hypothetical protein POPTR_0010s20930g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012552	DVL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G027830.1	CmoCh04G027830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 65..83 score: 2.7
None	No IPR available	PANTHER	PTHR33102	FAMILY NOT NAMED	coord: 22..90 score: 8.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G027830	Cucsa.010940	Cucumber (Gy14) v1	cgycmoB0544
CmoCh04G027830	CmaCh15G003780	Cucurbita maxima (Rimu)	cmacmoB308
CmoCh04G027830	Csa5G517730	Cucumber (Chinese Long) v2	cmocuB716
CmoCh04G027830	MELO3C021616	Melon (DHL92) v3.5.1	cmomeB624
CmoCh04G027830	ClCG09G019600	Watermelon (Charleston Gray)	cmowcgB608
CmoCh04G027830	CSPI05G17870	Wild cucumber (PI 183967)	cmocpiB724
CmoCh04G027830	Lsi04G008930	Bottle gourd (USVL1VR-Ls)	cmolsiB667
CmoCh04G027830	Cp4.1LG01g23760	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G027830	MELO3C021616.2	Melon (DHL92) v3.6.1	cmomedB713
CmoCh04G027830	MELO3C023874.2	Melon (DHL92) v3.6.1	cmomedB730
CmoCh04G027830	CsaV3_5G026780	Cucumber (Chinese Long) v3	cmocucB0848
CmoCh04G027830	CsaV3_5G008210	Cucumber (Chinese Long) v3	cmocucB0869
CmoCh04G027830	Cla97C09G181050	Watermelon (97103) v2	cmowmbB772
CmoCh04G027830	Bhi06G000517	Wax gourd	cmowgoB0836
CmoCh04G027830	CsGy5G007120	Cucumber (Gy14) v2	cgybcmoB648
CmoCh04G027830	CsGy5G017550	Cucumber (Gy14) v2	cgybcmoB626
CmoCh04G027830	Carg04487	Silver-seed gourd	carcmoB0940
CmoCh04G027830	Carg02341	Silver-seed gourd	carcmoB0370

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G027830	CmoCh15G003890	Cucurbita moschata (Rifu)	cmocmoB261

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G027830	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G027830	Watermelon (97103) v1	cmowmB646
CmoCh04G027830	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G027830	Bottle gourd (USVL1VR-Ls)	cmolsiB640