Cp4.1LG01g23760 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g23760
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Rotundifolia-like protein
Location	Cp4.1LG01 : 19467167 .. 19467439 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTCTGGTCGGTGCTTCTGCAACTGCTTCAAATCCTACTGCCAACGATCCCCCTTTCTACTTCGACGAGAAATGGAAGATGTCCAAGAAAGAAGGCTTAACCAGAACCCGCTCCTCCTCTTTCCCTCTCATGAAAAACTCCTCTCTTAGAAGGTGTTCGTTCACTAGAAAGTGCGCCAGATTGGTCAAAGAACAGAGGGCTCGATTCTACATCATGAGACGATGCGTCACCATGCTCATCTGCTGGAACGATTACACCGATTCTTGA

mRNA sequence

ATGGCTGCTCTGGTCGGTGCTTCTGCAACTGCTTCAAATCCTACTGCCAACGATCCCCCTTTCTACTTCGACGAGAAATGGAAGATGTCCAAGAAAGAAGGCTTAACCAGAACCCGCTCCTCCTCTTTCCCTCTCATGAAAAACTCCTCTCTTAGAAGGTGTTCGTTCACTAGAAAGTGCGCCAGATTGGTCAAAGAACAGAGGGCTCGATTCTACATCATGAGACGATGCGTCACCATGCTCATCTGCTGGAACGATTACACCGATTCTTGA

Coding sequence (CDS)

ATGGCTGCTCTGGTCGGTGCTTCTGCAACTGCTTCAAATCCTACTGCCAACGATCCCCCTTTCTACTTCGACGAGAAATGGAAGATGTCCAAGAAAGAAGGCTTAACCAGAACCCGCTCCTCCTCTTTCCCTCTCATGAAAAACTCCTCTCTTAGAAGGTGTTCGTTCACTAGAAAGTGCGCCAGATTGGTCAAAGAACAGAGGGCTCGATTCTACATCATGAGACGATGCGTCACCATGCTCATCTGCTGGAACGATTACACCGATTCTTGA

Protein sequence

MAALVGASATASNPTANDPPFYFDEKWKMSKKEGLTRTRSSSFPLMKNSSLRRCSFTRKCARLVKEQRARFYIMRRCVTMLICWNDYTDS

Homology

[Close]

BLAST of Cp4.1LG01g23760 vs. TrEMBL
Match: A0A0A0KUB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517730 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 9.1e-34
Identity = 76/93 (81.72%), Postives = 82/93 (88.17%), Query Frame = 1


Query: 1  MAALVGASATA--SNPTANDPPFYFDEKWKMSKKEGLTR-TRSSSFPLMKNSSLRRCSFT 60
          MA++VGA+AT   S  T  DPPFYFDEKWK SKKEGL R TRSSSFP++KNSS RRCSFT
Sbjct: 1  MASIVGATATTTTSTTTPTDPPFYFDEKWKFSKKEGLNRSTRSSSFPIIKNSSHRRCSFT 60

Query: 61 RKCARLVKEQRARFYIMRRCVTMLICWNDYTDS 91
          RKCARLVKEQRARFYIMRRCVTMLICW+DYTDS
Sbjct: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 93

[Close]

BLAST of Cp4.1LG01g23760 vs. TrEMBL
Match: B9HTG9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20930g PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 59/81 (72.84%), Postives = 70/81 (86.42%), Query Frame = 1


Query: 10 TASNPTANDPPFYFDEKWKMSKKEGLTRTRSSSFPLMKNSSLRRCSFTRKCARLVKEQRA 69
          T ++  +  P FYFDEKWK+SKKEG +R+RSS+  LMK+SS RRCSFTRKCARLVKEQRA
Sbjct: 4  TLTHSASEPPQFYFDEKWKLSKKEGSSRSRSSTSSLMKDSSQRRCSFTRKCARLVKEQRA 63

Query: 70 RFYIMRRCVTMLICWNDYTDS 91
          RFYI+RRCVTMLICW DY+D+
Sbjct: 64 RFYIVRRCVTMLICWRDYSDA 84

[Close]

BLAST of Cp4.1LG01g23760 vs. TrEMBL
Match: B9HMJ7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s05800g PE=4 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 3.1e-26
Identity = 59/81 (72.84%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 10 TASNPTANDPPFYFDEKWKMSKKEGLTRTRSSSFPLMKNSSLRRCSFTRKCARLVKEQRA 69
          T ++  +  P  YFDEKWK++KKEG +R+RSS+  LMKNSS RRCSFTRKCARLVKEQRA
Sbjct: 4  TLAHSASAPPQLYFDEKWKLTKKEGSSRSRSSTSSLMKNSSQRRCSFTRKCARLVKEQRA 63

Query: 70 RFYIMRRCVTMLICWNDYTDS 91
          RFYIMRRCVTMLICW DY D+
Sbjct: 64 RFYIMRRCVTMLICWRDYNDA 84

[Close]

BLAST of Cp4.1LG01g23760 vs. TrEMBL
Match: M5X652_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024599mg PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.1e-26
Identity = 63/93 (67.74%), Postives = 78/93 (83.87%), Query Frame = 1


Query: 1  MAALVGASATASNPTANDPPFYFDEKWKMSKKEGLTRT-RSSSFPLMKNSSL--RRCSFT 60
          ++A   ++A  ++   + PPFYFDEKWK+SKKEG +R+ RSSS PLMK+SS   RRCSF+
Sbjct: 4  LSATATSTAATTSSHHHPPPFYFDEKWKLSKKEGSSRSSRSSSCPLMKSSSQSRRRCSFS 63

Query: 61 RKCARLVKEQRARFYIMRRCVTMLICWNDYTDS 91
          RKCA+LVKEQRARFYI+RRCVTMLICWNDY+DS
Sbjct: 64 RKCAKLVKEQRARFYIVRRCVTMLICWNDYSDS 96

[Close]

BLAST of Cp4.1LG01g23760 vs. TrEMBL
Match: V7B6F3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G191700g PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 5.4e-26
Identity = 58/79 (73.42%), Postives = 66/79 (83.54%), Query Frame = 1


Query: 12  SNPTANDPPFYFDEKWKMSKKEGLTRTRSSSFPLMKNSSLRRCSFTRKCARLVKEQRARF 71
           ++  +  P  YFDEKWK+SKKEG TR+RSSS P +KNSS RRC+F  KCARLVKEQRARF
Sbjct: 63  ASSVSTTPTLYFDEKWKLSKKEGSTRSRSSSAPFIKNSSQRRCAFASKCARLVKEQRARF 122

Query: 72  YIMRRCVTMLICWNDYTDS 91
           YIMRRCVTMLICW DY+DS
Sbjct: 123 YIMRRCVTMLICWRDYSDS 141

[Close]

BLAST of Cp4.1LG01g23760 vs. TAIR10
Match: AT2G39705.1 (AT2G39705.1 ROTUNDIFOLIA like 8)

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-19
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 1


Query: 22 YFDEKWKMSKKEG----LTRTRSSSFPLMKNSSLRRCSFTRKCARLVKEQRARFYIMRRC 81
          + DEKWK+SKK+G    +TR+ S+S          RC+FTRKCARLVKEQRARFYIMRRC
Sbjct: 14 HLDEKWKLSKKDGGASRITRSSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRC 73

Query: 82 VTMLICWND-YTDS 91
          V MLICW D Y+DS
Sbjct: 74 VIMLICWRDNYSDS 87

[Close]

BLAST of Cp4.1LG01g23760 vs. TAIR10
Match: AT3G55515.1 (AT3G55515.1 ROTUNDIFOLIA like 7)

HSP 1 Score: 65.1 bits (157), Expect = 2.6e-11
Identity = 37/70 (52.86%), Postives = 43/70 (61.43%), Query Frame = 1


Query: 28 KMSKKEGL-------TRTRSSSFPLMKNSSLRRCSFTRKCARLVKEQRARFYIMRRCVTM 87
          ++SKKE L         TRSS           +  FTRKC RLVKEQRARFYIMRRCV M
Sbjct: 11 QLSKKESLGDNGGALNTTRSS------RQKQGKYGFTRKCGRLVKEQRARFYIMRRCVVM 70

Query: 88 LICWNDYTDS 91
          LICW D+ ++
Sbjct: 71 LICWTDHNNN 74

[Close]

BLAST of Cp4.1LG01g23760 vs. TAIR10
Match: AT2G29125.1 (AT2G29125.1 ROTUNDIFOLIA like 2)

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-08
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1


Query: 38  TRSSSFPLMKNSSLRRCSFTRKCARLVKEQRARFYIMRRCVTMLICWNDYTDS 91
           +RS S    ++SS    S T+K + L KEQ+ARFYIMRRCV ML+CW+ + DS
Sbjct: 63  SRSFSRKERRSSSSSSSSITQKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 115

[Close]

BLAST of Cp4.1LG01g23760 vs. TAIR10
Match: AT1G53708.1 (AT1G53708.1 ROTUNDIFOLIA like 9)

HSP 1 Score: 52.8 bits (125), Expect = 1.3e-07
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 1


Query: 55 SFTRKCARLVKEQRARFYIMRRCVTMLICW 85
          +FT KCA LVKEQRAR YI+RRC TML CW
Sbjct: 13 AFTSKCASLVKEQRARLYILRRCATMLCCW 42

[Close]

BLAST of Cp4.1LG01g23760 vs. TAIR10
Match: AT5G59510.1 (AT5G59510.1 ROTUNDIFOLIA like 5)

HSP 1 Score: 52.4 bits (124), Expect = 1.7e-07
Identity = 27/77 (35.06%), Postives = 45/77 (58.44%), Query Frame = 1


Query: 11  ASNPTANDPPFYFDEKWKMSKKEGLTRTRSSSFPLMKNSSLRRCSFTRKCARLVKEQRAR 70
           ++ PT++  PF        S K  +  + +S   + ++ S +  S TRKC  + KE ++R
Sbjct: 67  SAKPTSSKSPFLSRSG---STKCPVDTSSTSKCSISRSLSQKGASVTRKCRNMAKEHKSR 126

Query: 71  FYIMRRCVTMLICWNDY 88
           FYIM+RCV ML+CW+ +
Sbjct: 127 FYIMKRCVLMLVCWHKH 140

[Close]

BLAST of Cp4.1LG01g23760 vs. NCBI nr
Match: gi|778703484|ref|XP_011655374.1| (PREDICTED: uncharacterized protein LOC105435519 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-33
Identity = 76/93 (81.72%), Postives = 82/93 (88.17%), Query Frame = 1


Query: 1  MAALVGASATA--SNPTANDPPFYFDEKWKMSKKEGLTR-TRSSSFPLMKNSSLRRCSFT 60
          MA++VGA+AT   S  T  DPPFYFDEKWK SKKEGL R TRSSSFP++KNSS RRCSFT
Sbjct: 1  MASIVGATATTTTSTTTPTDPPFYFDEKWKFSKKEGLNRSTRSSSFPIIKNSSHRRCSFT 60

Query: 61 RKCARLVKEQRARFYIMRRCVTMLICWNDYTDS 91
          RKCARLVKEQRARFYIMRRCVTMLICW+DYTDS
Sbjct: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 93

[Close]

BLAST of Cp4.1LG01g23760 vs. NCBI nr
Match: gi|224112731|ref|XP_002316275.1| (hypothetical protein POPTR_0010s20930g [Populus trichocarpa])

HSP 1 Score: 126.7 bits (317), Expect = 2.0e-26
Identity = 59/81 (72.84%), Postives = 70/81 (86.42%), Query Frame = 1


Query: 10 TASNPTANDPPFYFDEKWKMSKKEGLTRTRSSSFPLMKNSSLRRCSFTRKCARLVKEQRA 69
          T ++  +  P FYFDEKWK+SKKEG +R+RSS+  LMK+SS RRCSFTRKCARLVKEQRA
Sbjct: 4  TLTHSASEPPQFYFDEKWKLSKKEGSSRSRSSTSSLMKDSSQRRCSFTRKCARLVKEQRA 63

Query: 70 RFYIMRRCVTMLICWNDYTDS 91
          RFYI+RRCVTMLICW DY+D+
Sbjct: 64 RFYIVRRCVTMLICWRDYSDA 84

[Close]

BLAST of Cp4.1LG01g23760 vs. NCBI nr
Match: gi|596037259|ref|XP_007219762.1| (hypothetical protein PRUPE_ppa024599mg [Prunus persica])

HSP 1 Score: 125.6 bits (314), Expect = 4.5e-26
Identity = 63/93 (67.74%), Postives = 78/93 (83.87%), Query Frame = 1


Query: 1  MAALVGASATASNPTANDPPFYFDEKWKMSKKEGLTRT-RSSSFPLMKNSSL--RRCSFT 60
          ++A   ++A  ++   + PPFYFDEKWK+SKKEG +R+ RSSS PLMK+SS   RRCSF+
Sbjct: 4  LSATATSTAATTSSHHHPPPFYFDEKWKLSKKEGSSRSSRSSSCPLMKSSSQSRRRCSFS 63

Query: 61 RKCARLVKEQRARFYIMRRCVTMLICWNDYTDS 91
          RKCA+LVKEQRARFYI+RRCVTMLICWNDY+DS
Sbjct: 64 RKCAKLVKEQRARFYIVRRCVTMLICWNDYSDS 96

[Close]

BLAST of Cp4.1LG01g23760 vs. NCBI nr
Match: gi|566182563|ref|XP_002311177.2| (hypothetical protein POPTR_0008s05800g [Populus trichocarpa])

HSP 1 Score: 125.6 bits (314), Expect = 4.5e-26
Identity = 59/81 (72.84%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 10 TASNPTANDPPFYFDEKWKMSKKEGLTRTRSSSFPLMKNSSLRRCSFTRKCARLVKEQRA 69
          T ++  +  P  YFDEKWK++KKEG +R+RSS+  LMKNSS RRCSFTRKCARLVKEQRA
Sbjct: 4  TLAHSASAPPQLYFDEKWKLTKKEGSSRSRSSTSSLMKNSSQRRCSFTRKCARLVKEQRA 63

Query: 70 RFYIMRRCVTMLICWNDYTDS 91
          RFYIMRRCVTMLICW DY D+
Sbjct: 64 RFYIMRRCVTMLICWRDYNDA 84

[Close]

BLAST of Cp4.1LG01g23760 vs. NCBI nr
Match: gi|802547175|ref|XP_012088921.1| (PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas])

HSP 1 Score: 124.8 bits (312), Expect = 7.7e-26
Identity = 62/87 (71.26%), Postives = 72/87 (82.76%), Query Frame = 1


Query: 5  VGASATASNPTANDPPFYFDEKWKMSKKEGLTRTRSSSFPLMKNS-SLRRCSFTRKCARL 64
          +  SAT  + T+    FYFDEKWK+SKKEG +R+R S+ PLMK++ S RRCSFTRKCARL
Sbjct: 1  MATSATLRHSTSAPAQFYFDEKWKLSKKEGSSRSRLSTSPLMKSTTSQRRCSFTRKCARL 60

Query: 65 VKEQRARFYIMRRCVTMLICWNDYTDS 91
          VKEQRARFYIMRRCVTMLICW DY+DS
Sbjct: 61 VKEQRARFYIMRRCVTMLICWRDYSDS 87

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g23760 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g23760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUB0_CUCSA	9.1e-34	81.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517730 PE=4 SV=1	[more]
B9HTG9_POPTR	1.4e-26	72.84	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20930g PE=4 SV=1	[more]
B9HMJ7_POPTR	3.1e-26	72.84	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s05800g PE=4 SV=2	[more]
M5X652_PRUPE	3.1e-26	67.74	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024599mg PE=4 SV=1	[more]
V7B6F3_PHAVU	5.4e-26	73.42	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G191700g PE=4 SV=1	[more]

BLAST of Cp4.1LG01g23760 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G39705.1	1.5e-19	63.51	ROTUNDIFOLIA like 8	[more]
AT3G55515.1	2.6e-11	52.86	ROTUNDIFOLIA like 7	[more]
AT2G29125.1	1.6e-08	52.83	ROTUNDIFOLIA like 2	[more]
AT1G53708.1	1.3e-07	76.67	ROTUNDIFOLIA like 9	[more]
AT5G59510.1	1.7e-07	35.06	ROTUNDIFOLIA like 5	[more]

BLAST of Cp4.1LG01g23760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778703484\|ref\|XP_011655374.1\|	1.3e-33	81.72	PREDICTED: uncharacterized protein LOC105435519 [Cucumis sativus]	[more]
gi\|224112731\|ref\|XP_002316275.1\|	2.0e-26	72.84	hypothetical protein POPTR_0010s20930g [Populus trichocarpa]	[more]
gi\|596037259\|ref\|XP_007219762.1\|	4.5e-26	67.74	hypothetical protein PRUPE_ppa024599mg [Prunus persica]	[more]
gi\|566182563\|ref\|XP_002311177.2\|	4.5e-26	72.84	hypothetical protein POPTR_0008s05800g [Populus trichocarpa]	[more]
gi\|802547175\|ref\|XP_012088921.1\|	7.7e-26	71.26	PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012552	DVL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g23760.1	Cp4.1LG01g23760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 65..83 score: 2.7
None	No IPR available	PANTHER	PTHR33102	FAMILY NOT NAMED	coord: 22..90 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g23760	Cucsa.010940	Cucumber (Gy14) v1	cgycpeB0522
Cp4.1LG01g23760	CmaCh15G003780	Cucurbita maxima (Rimu)	cmacpeB317
Cp4.1LG01g23760	CmoCh15G003890	Cucurbita moschata (Rifu)	cmocpeB279
Cp4.1LG01g23760	CmoCh04G027830	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g23760	Csa5G517730	Cucumber (Chinese Long) v2	cpecuB417
Cp4.1LG01g23760	MELO3C021616	Melon (DHL92) v3.5.1	cpemeB358
Cp4.1LG01g23760	ClCG09G019600	Watermelon (Charleston Gray)	cpewcgB344
Cp4.1LG01g23760	CSPI05G17870	Wild cucumber (PI 183967)	cpecpiB416
Cp4.1LG01g23760	MELO3C021616.2	Melon (DHL92) v3.6.1	cpemedB418
Cp4.1LG01g23760	CsaV3_5G026780	Cucumber (Chinese Long) v3	cpecucB0519
Cp4.1LG01g23760	Bhi06G000517	Wax gourd	cpewgoB0502
Cp4.1LG01g23760	CsGy5G017550	Cucumber (Gy14) v2	cgybcpeB627
Cp4.1LG01g23760	Carg04487	Silver-seed gourd	carcpeB0965
Cp4.1LG01g23760	Carg02341	Silver-seed gourd	carcpeB0374

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g23760	Cucurbita pepo (Zucchini)	cpecpeB199
Cp4.1LG01g23760	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g23760	Bottle gourd (USVL1VR-Ls)	cpelsiB336
Cp4.1LG01g23760	Watermelon (97103) v1	cpewmB381