ClCG09G019600 (gene) Watermelon (Charleston Gray)

Overview
NameClCG09G019600
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionROTUNDIFOLIA like 8 LENGTH=87
LocationCG_Chr09 : 36773390 .. 36773665 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCCTGGTCGCTGCAACTGCAACTACTTCAACTGCTACTGCCAGTGATCCTCCTCTTTACTTCGATGAGAAATGGAAGATGTCCAAGAAAGAAAGCTTAACCAGATCAACCCGCCCTTCTTCTTTCCCTATCATGAAAAATTCCTCTCATAGAAGATGTTCTTTCACAAGGAAGTGCGCTAGATTGGTCAAAGAACAGAGAGCTCGATTCTACATCATGAGGCGATGCGTCACCATGCTCATCTGTTGGCACGATTACACCGATTCTTGA

mRNA sequence

ATGGCTTCCCTGGTCGCTGCAACTGCAACTACTTCAACTGCTACTGCCAGTGATCCTCCTCTTTACTTCGATGAGAAATGGAAGATGTCCAAGAAAGAAAGCTTAACCAGATCAACCCGCCCTTCTTCTTTCCCTATCATGAAAAATTCCTCTCATAGAAGATGTTCTTTCACAAGGAAGTGCGCTAGATTGGTCAAAGAACAGAGAGCTCGATTCTACATCATGAGGCGATGCGTCACCATGCTCATCTGTTGGCACGATTACACCGATTCTTGA

Coding sequence (CDS)

ATGGCTTCCCTGGTCGCTGCAACTGCAACTACTTCAACTGCTACTGCCAGTGATCCTCCTCTTTACTTCGATGAGAAATGGAAGATGTCCAAGAAAGAAAGCTTAACCAGATCAACCCGCCCTTCTTCTTTCCCTATCATGAAAAATTCCTCTCATAGAAGATGTTCTTTCACAAGGAAGTGCGCTAGATTGGTCAAAGAACAGAGAGCTCGATTCTACATCATGAGGCGATGCGTCACCATGCTCATCTGTTGGCACGATTACACCGATTCTTGA

Protein sequence

MASLVAATATTSTATASDPPLYFDEKWKMSKKESLTRSTRPSSFPIMKNSSHRRCSFTRKCARLVKEQRARFYIMRRCVTMLICWHDYTDS
Homology
[Close]
BLAST of ClCG09G019600 vs. TrEMBL
Match: A0A0A0KUB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517730 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.6e-38
Identity = 80/93 (86.02%), Postives = 83/93 (89.25%), Query Frame = 1 

Query: 1  MASLVAATATT--STATASDPPLYFDEKWKMSKKESLTRSTRPSSFPIMKNSSHRRCSFT 60
          MAS+V ATATT  ST T +DPP YFDEKWK SKKE L RSTR SSFPI+KNSSHRRCSFT
Sbjct: 1  MASIVGATATTTTSTTTPTDPPFYFDEKWKFSKKEGLNRSTRSSSFPIIKNSSHRRCSFT 60

Query: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 92
          RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS
Sbjct: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 93

[Close]
BLAST of ClCG09G019600 vs. TrEMBL
Match: M5X652_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024599mg PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.5e-28
Identity = 68/97 (70.10%), Postives = 81/97 (83.51%), Query Frame = 1 

Query: 1  MASLVAATATTSTATASD----PPLYFDEKWKMSKKESLTRSTRPSSFPIMKNSSH--RR 60
          MASL +ATAT++ AT S     PP YFDEKWK+SKKE  +RS+R SS P+MK+SS   RR
Sbjct: 1  MASL-SATATSTAATTSSHHHPPPFYFDEKWKLSKKEGSSRSSRSSSCPLMKSSSQSRRR 60

Query: 61 CSFTRKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 92
          CSF+RKCA+LVKEQRARFYI+RRCVTMLICW+DY+DS
Sbjct: 61 CSFSRKCAKLVKEQRARFYIVRRCVTMLICWNDYSDS 96

[Close]
BLAST of ClCG09G019600 vs. TrEMBL
Match: B9T005_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0040480 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-26
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 1 

Query: 9  ATTSTATASDPP-LYFDEKWKMSKKESLTRSTRPSSFPIMKNSS---HRRCSFTRKCARL 68
          A++ T +AS PP  YFDEKWK+SKKE  +RS R S+ P+MKNSS    RRCSFTRKCARL
Sbjct: 2  ASSLTHSASAPPQFYFDEKWKLSKKEGSSRSVRSSTSPLMKNSSSSSQRRCSFTRKCARL 61

Query: 69 VKEQRARFYIMRRCVTMLICWHDYTDS 92
          VKEQRARFYI+RRCVTMLICW DY+DS
Sbjct: 62 VKEQRARFYIVRRCVTMLICWRDYSDS 88

[Close]
BLAST of ClCG09G019600 vs. TrEMBL
Match: B9HMJ7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s05800g PE=4 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 7.1e-26
Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 1 

Query: 8  TATTSTATASDPPLYFDEKWKMSKKESLTRSTRPSSFPIMKNSSHRRCSFTRKCARLVKE 67
          T T + + ++ P LYFDEKWK++KKE  +RS R S+  +MKNSS RRCSFTRKCARLVKE
Sbjct: 2  TNTLAHSASAPPQLYFDEKWKLTKKEGSSRS-RSSTSSLMKNSSQRRCSFTRKCARLVKE 61

Query: 68 QRARFYIMRRCVTMLICWHDYTDS 92
          QRARFYIMRRCVTMLICW DY D+
Sbjct: 62 QRARFYIMRRCVTMLICWRDYNDA 84

[Close]
BLAST of ClCG09G019600 vs. TrEMBL
Match: B9HTG9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20930g PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 9.3e-26
Identity = 61/84 (72.62%), Postives = 71/84 (84.52%), Query Frame = 1 

Query: 9  ATTSTATASDPP-LYFDEKWKMSKKESLTRSTRPSSFPIMKNSSHRRCSFTRKCARLVKE 68
          A T T +AS+PP  YFDEKWK+SKKE  +RS R S+  +MK+SS RRCSFTRKCARLVKE
Sbjct: 2  AITLTHSASEPPQFYFDEKWKLSKKEGSSRS-RSSTSSLMKDSSQRRCSFTRKCARLVKE 61

Query: 69 QRARFYIMRRCVTMLICWHDYTDS 92
          QRARFYI+RRCVTMLICW DY+D+
Sbjct: 62 QRARFYIVRRCVTMLICWRDYSDA 84

[Close]
BLAST of ClCG09G019600 vs. TAIR10
Match: AT2G39705.1 (AT2G39705.1 ROTUNDIFOLIA like 8)

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-19
Identity = 51/88 (57.95%), Postives = 60/88 (68.18%), Query Frame = 1 

Query: 9  ATTSTATASDPPLYFDEKWKMSKKES----LTRSTRPSSFPIMKNSSHRRCSFTRKCARL 68
          A++S+ T S   ++ DEKWK+SKK+     +TRS+  SS          RC+FTRKCARL
Sbjct: 2  ASSSSLTRSGS-VHLDEKWKLSKKDGGASRITRSSSTSSSSF-NGKKQGRCAFTRKCARL 61

Query: 69 VKEQRARFYIMRRCVTMLICWHD-YTDS 92
          VKEQRARFYIMRRCV MLICW D Y+DS
Sbjct: 62 VKEQRARFYIMRRCVIMLICWRDNYSDS 87

[Close]
BLAST of ClCG09G019600 vs. TAIR10
Match: AT3G55515.1 (AT3G55515.1 ROTUNDIFOLIA like 7)

HSP 1 Score: 70.1 bits (170), Expect = 8.0e-13
Identity = 34/64 (53.12%), Postives = 40/64 (62.50%), Query Frame = 1 

Query: 28 KMSKKESLTRSTRPSSFPIMKNSSHRRCSFTRKCARLVKEQRARFYIMRRCVTMLICWHD 87
          ++SKKESL  +    +          +  FTRKC RLVKEQRARFYIMRRCV MLICW D
Sbjct: 11 QLSKKESLGDNGGALNTTRSSRQKQGKYGFTRKCGRLVKEQRARFYIMRRCVVMLICWTD 70

Query: 88 YTDS 92
          + ++
Sbjct: 71 HNNN 74

[Close]
BLAST of ClCG09G019600 vs. TAIR10
Match: AT2G29125.1 (AT2G29125.1 ROTUNDIFOLIA like 2)

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-10
Identity = 35/88 (39.77%), Postives = 45/88 (51.14%), Query Frame = 1 

Query: 10  TTSTATASDPPLYFDEKWKMSKKESLTRSTRPSSFPIM------KNSSHRRCSFTRKCAR 69
           +TS ++   P        K S   S + S+  SS          ++SS    S T+K + 
Sbjct: 28  STSASSTKSPIFVRSSSTKCSVPSSSSSSSSSSSISRSFSRKERRSSSSSSSSITQKYSS 87

Query: 70  LVKEQRARFYIMRRCVTMLICWHDYTDS 92
           L KEQ+ARFYIMRRCV ML+CWH + DS
Sbjct: 88  LAKEQKARFYIMRRCVAMLVCWHKHGDS 115

[Close]
BLAST of ClCG09G019600 vs. TAIR10
Match: AT5G59510.1 (AT5G59510.1 ROTUNDIFOLIA like 5)

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-10
Identity = 34/92 (36.96%), Postives = 48/92 (52.17%), Query Frame = 1 

Query: 9   ATTSTATASDPPLY---FDEKWKMSKKESLTRS---------TRPSSFPIMKNSSHRRCS 68
           +T  T+ +S  P++   F  K   SK   L+RS         +  S   I ++ S +  S
Sbjct: 49  STKPTSYSSSEPIFRRSFSAKPTSSKSPFLSRSGSTKCPVDTSSTSKCSISRSLSQKGAS 108

Query: 69  FTRKCARLVKEQRARFYIMRRCVTMLICWHDY 89
            TRKC  + KE ++RFYIM+RCV ML+CWH +
Sbjct: 109 VTRKCRNMAKEHKSRFYIMKRCVLMLVCWHKH 140

[Close]
BLAST of ClCG09G019600 vs. TAIR10
Match: AT1G07490.1 (AT1G07490.1 ROTUNDIFOLIA like 3)

HSP 1 Score: 61.2 bits (147), Expect = 3.7e-10
Identity = 36/94 (38.30%), Postives = 52/94 (55.32%), Query Frame = 1 

Query: 3   SLVAATATTSTATASDPPLYFDEKWKMSKKESLTRSTRP-------SSFPIMKNSSHR-R 62
           +L A+ +++ST++ S     F      SK  +  RS+         SS  I ++SS + +
Sbjct: 12  ALAASCSSSSTSSKSKFSRSFSTSASSSKAPAFVRSSSTKCSVPSSSSSSISRSSSKKEK 71

Query: 63  CSFTRKCARLVKEQRARFYIMRRCVTMLICWHDY 89
            S T+K + L KEQ+ RFYIMRRCV ML+CWH +
Sbjct: 72  GSITQKYSSLAKEQKGRFYIMRRCVAMLVCWHKH 105

[Close]
BLAST of ClCG09G019600 vs. NCBI nr
Match: gi|778703484|ref|XP_011655374.1| (PREDICTED: uncharacterized protein LOC105435519 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 2.3e-38
Identity = 80/93 (86.02%), Postives = 83/93 (89.25%), Query Frame = 1 

Query: 1  MASLVAATATT--STATASDPPLYFDEKWKMSKKESLTRSTRPSSFPIMKNSSHRRCSFT 60
          MAS+V ATATT  ST T +DPP YFDEKWK SKKE L RSTR SSFPI+KNSSHRRCSFT
Sbjct: 1  MASIVGATATTTTSTTTPTDPPFYFDEKWKFSKKEGLNRSTRSSSFPIIKNSSHRRCSFT 60

Query: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 92
          RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS
Sbjct: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 93

[Close]
BLAST of ClCG09G019600 vs. NCBI nr
Match: gi|596037259|ref|XP_007219762.1| (hypothetical protein PRUPE_ppa024599mg [Prunus persica])

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-28
Identity = 68/97 (70.10%), Postives = 81/97 (83.51%), Query Frame = 1 

Query: 1  MASLVAATATTSTATASD----PPLYFDEKWKMSKKESLTRSTRPSSFPIMKNSSH--RR 60
          MASL +ATAT++ AT S     PP YFDEKWK+SKKE  +RS+R SS P+MK+SS   RR
Sbjct: 1  MASL-SATATSTAATTSSHHHPPPFYFDEKWKLSKKEGSSRSSRSSSCPLMKSSSQSRRR 60

Query: 61 CSFTRKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 92
          CSF+RKCA+LVKEQRARFYI+RRCVTMLICW+DY+DS
Sbjct: 61 CSFSRKCAKLVKEQRARFYIVRRCVTMLICWNDYSDS 96

[Close]
BLAST of ClCG09G019600 vs. NCBI nr
Match: gi|694352127|ref|XP_009357749.1| (PREDICTED: uncharacterized protein LOC103948440 [Pyrus x bretschneideri])

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-27
Identity = 67/95 (70.53%), Postives = 79/95 (83.16%), Query Frame = 1 

Query: 3  SLVAATATTSTATASD---PPLYFDEKWKMSKKESLTRSTRPSS-FPIMKNSS--HRRCS 62
          S+ AA  + +TA+AS    PP YFDEKWK+SKKE+ +RS+R SS   +MKNSS  +RRCS
Sbjct: 5  SVPAAGGSAATASASHHHPPPFYFDEKWKLSKKEASSRSSRSSSSIHLMKNSSRSNRRCS 64

Query: 63 FTRKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 92
          F+RKCARLVKEQRARFYIMRRCVTMLICWHDY+DS
Sbjct: 65 FSRKCARLVKEQRARFYIMRRCVTMLICWHDYSDS 99

[Close]
BLAST of ClCG09G019600 vs. NCBI nr
Match: gi|223528804|gb|EEF30810.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-26
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 1 

Query: 9  ATTSTATASDPP-LYFDEKWKMSKKESLTRSTRPSSFPIMKNSS---HRRCSFTRKCARL 68
          A++ T +AS PP  YFDEKWK+SKKE  +RS R S+ P+MKNSS    RRCSFTRKCARL
Sbjct: 2  ASSLTHSASAPPQFYFDEKWKLSKKEGSSRSVRSSTSPLMKNSSSSSQRRCSFTRKCARL 61

Query: 69 VKEQRARFYIMRRCVTMLICWHDYTDS 92
          VKEQRARFYI+RRCVTMLICW DY+DS
Sbjct: 62 VKEQRARFYIVRRCVTMLICWRDYSDS 88

[Close]
BLAST of ClCG09G019600 vs. NCBI nr
Match: gi|566182563|ref|XP_002311177.2| (hypothetical protein POPTR_0008s05800g [Populus trichocarpa])

HSP 1 Score: 124.4 bits (311), Expect = 1.0e-25
Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 1 

Query: 8  TATTSTATASDPPLYFDEKWKMSKKESLTRSTRPSSFPIMKNSSHRRCSFTRKCARLVKE 67
          T T + + ++ P LYFDEKWK++KKE  +RS R S+  +MKNSS RRCSFTRKCARLVKE
Sbjct: 2  TNTLAHSASAPPQLYFDEKWKLTKKEGSSRS-RSSTSSLMKNSSQRRCSFTRKCARLVKE 61

Query: 68 QRARFYIMRRCVTMLICWHDYTDS 92
          QRARFYIMRRCVTMLICW DY D+
Sbjct: 62 QRARFYIMRRCVTMLICWRDYNDA 84

The following BLAST results are available for this feature:
BLAST of ClCG09G019600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUB0_CUCSA1.6e-3886.02Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517730 PE=4 SV=1[more]
M5X652_PRUPE1.5e-2870.10Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024599mg PE=4 SV=1[more]
B9T005_RICCO1.1e-2672.41Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0040480 PE=4 SV=1[more]
B9HMJ7_POPTR7.1e-2670.24Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s05800g PE=4 SV=2[more]
B9HTG9_POPTR9.3e-2672.62Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20930g PE=4 SV=1[more]
BLAST of ClCG09G019600 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G39705.11.5e-1957.95 ROTUNDIFOLIA like 8[more]
AT3G55515.18.0e-1353.13 ROTUNDIFOLIA like 7[more]
AT2G29125.11.7e-1039.77 ROTUNDIFOLIA like 2[more]
AT5G59510.11.7e-1036.96 ROTUNDIFOLIA like 5[more]
AT1G07490.13.7e-1038.30 ROTUNDIFOLIA like 3[more]
BLAST of ClCG09G019600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778703484|ref|XP_011655374.1|2.3e-3886.02PREDICTED: uncharacterized protein LOC105435519 [Cucumis sativus][more]
gi|596037259|ref|XP_007219762.1|2.2e-2870.10hypothetical protein PRUPE_ppa024599mg [Prunus persica][more]
gi|694352127|ref|XP_009357749.1|1.9e-2770.53PREDICTED: uncharacterized protein LOC103948440 [Pyrus x bretschneideri][more]
gi|223528804|gb|EEF30810.1|1.6e-2672.41conserved hypothetical protein [Ricinus communis][more]
gi|566182563|ref|XP_002311177.2|1.0e-2570.24hypothetical protein POPTR_0008s05800g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012552DVL
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0048367 shoot system development
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G019600.1ClCG09G019600.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012552DVLPFAMPF08137DVLcoord: 66..84
score: 2.7
NoneNo IPR availablePANTHERPTHR33102FAMILY NOT NAMEDcoord: 21..91
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG09G019600Csa5G517730Cucumber (Chinese Long) v2cuwcgB338
ClCG09G019600Csa5G182670Cucumber (Chinese Long) v2cuwcgB342
ClCG09G019600MELO3C023874Melon (DHL92) v3.5.1mewcgB040
ClCG09G019600MELO3C021616Melon (DHL92) v3.5.1mewcgB002
ClCG09G019600Cla004000Watermelon (97103) v1wcgwmB025
ClCG09G019600Cla97C09G181050Watermelon (97103) v2wcgwmbB035
ClCG09G019600Bhi06G000517Wax gourdwcgwgoB016
ClCG09G019600CSPI05G09770Wild cucumber (PI 183967)cpiwcgB359
ClCG09G019600CSPI05G17870Wild cucumber (PI 183967)cpiwcgB355
ClCG09G019600Cucsa.165200Cucumber (Gy14) v1cgywcgB287
ClCG09G019600Cucsa.010940Cucumber (Gy14) v1cgywcgB338
ClCG09G019600CmaCh15G003780Cucurbita maxima (Rimu)cmawcgB244
ClCG09G019600CmoCh15G003890Cucurbita moschata (Rifu)cmowcgB233
ClCG09G019600CmoCh04G027830Cucurbita moschata (Rifu)cmowcgB608
ClCG09G019600Lsi04G008930Bottle gourd (USVL1VR-Ls)lsiwcgB254
ClCG09G019600Cp4.1LG01g23760Cucurbita pepo (Zucchini)cpewcgB344
ClCG09G019600CsGy5G017550Cucumber (Gy14) v2cgybwcgB314
ClCG09G019600MELO3C023874.2Melon (DHL92) v3.6.1medwcgB039
ClCG09G019600MELO3C021616.2Melon (DHL92) v3.6.1medwcgB000
ClCG09G019600Carg02341Silver-seed gourdcarwcgB0249
ClCG09G019600Carg04487Silver-seed gourdcarwcgB0657
ClCG09G019600CsaV3_5G026780Cucumber (Chinese Long) v3cucwcgB362
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
ClCG09G019600ClCG07G003480Watermelon (Charleston Gray)wcgwcgB037
The following block(s) are covering this gene:
GeneOrganismBlock
ClCG09G019600Cucurbita maxima (Rimu)cmawcgB608
ClCG09G019600Watermelon (97103) v1wcgwmB008
ClCG09G019600Cucurbita pepo (Zucchini)cpewcgB154
ClCG09G019600Bottle gourd (USVL1VR-Ls)lsiwcgB155