CmaCh16G012180 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G012180
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	ATP-dependent Clp protease proteolytic subunit
Location	Cma_Chr16 : 9219185 .. 9223880 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTGTATTTCTGTATTTCTGTACTTCTCACCCAACCAAATCCCCAAACTCATCGTCTATCAGCTTCTTCCTGGTTTCAGAGCTGAAGTAGAGCAGTGCTGCAAATCCATGGAGCTTCTTTCACGCTGTTCTACTCTGATTCCTCATGCCTCCTCTCTCGGCCTTCTCAATTCTCATGGGAAACCGTCAAATTTCTATCCAAAGCTCAAATCCGGTCTTTCTTTTCCTTCGGCTTCATCGGTTCTCAAAACAACCGCTCGTAAGCCCTCGAGAACCCTAGCTACGTCCTCTTCTGTTCATATGACGGGTCCGCAAACGCCGGATGCCGCCCAGAGAGGCGCCGAGACTGACGCTATGGGACTGCTTCTCAGGGAGAGGATTGTCTTCTTGGGGAACAGCATCGATGATTTTGTGGCGGATGCTATTATCAGTCAGCTTTTGCTCTTGGATGCTCAGGACTCTACTAAAGATATCAGACTTTTCATTAATTCCTCTGGCGGCTCTCTCAGGTATTCACGAGGTGATTTTTTGTGCATAATGTAGTTGGTGAAGTATGGAATATGAAATTCGGGCTCATTTGTGTTCTTTCCAAACGATTTAGGTAATTTTATTTCTAGGAATATGCGATTTATGCCTAACTTTCATATGCTTTCCTTACCGCGCCGAATGCAAGAGTTAGCCTACGTTACTTGATCTCTGCCTCTCGCAATTTCTATATAGTTTTCTTCATCTGCTTCACAAACGGTTAGCGTACGAATGGGGGCATTCATTCCGGTGGTGAGTTGGGTCACTGAAAATCTAGGATTCGTTGTAGATCAATGAACTTGGAATGGAAAATTACTTTTAATATATAGAGATATTCATGTTATGCACCTAGCTATCCATAGAAATGCTTGTGAATGATGAAAGTTATATGAACATTCAACATTGAAATTATTTTAAAAAAAGAAAAAAAAAAAAAGAAAAGAAAGAACCGTGCATGAGTGTTAGTCTACCGTGTTACGCGGAACTTTGCTGGTCTTCTTATTTCTTTGGGTGGCTTGAGAATTTGAAATGTAAGGACTAGAAACACCGCCTTCCTCTCAAAGTGGATGCTTGGGTGAAGAGAGTCCCCCTAGAAGAGGCTTAATCGAGTAAATATGCGATTGGCAATCTTTGTGAAACTTAGGTTCTAGAGCTGACATTGATTAAATATGAGATTTCTTTTATCAGTGTCCTTTTAAAAAATGGCAATGGTCGGGGGGACATCAATGAAATCTGCCAATCTCCAGCTGAATTGTAAAGAAGGCTGGTTAGATAAACCCTTTTTTCTTTGGTTTGAAAGGAGAACTCTCAGTTCTTCCTTTGGGATATGACTTACAAGAGCCTAAACACTTGTGATTGGATTCAAAAGATGATCCCTTCCATGGCTTTATCTCTTTGCTTACCCTGCATATCTAATGATGGGGACCATCTTTTTATTCAATTAACAACATGTTGCACAAAGGTTTACATGTGATTCTGTTATGAACCCCCCACCGTTCTGGATAGGAATCAATTTCACGGACTAAATGAAATGATACAAATAGGTAAACCCATCTGAAAAGGAACCATATTTTTGGACAACGATTCTCAATATATTCGGATGACATCTCACATTTACTAGGGAGGTAAAGGATATATAGGATATGGCCTTAACGTACTCCCTTTCAAGAATGCAAAAGTCCTACTATGGAAAAATCTCATCATGGCTTTCCTTTGGAATTGTGGAAAGAAAGAAATCAGAGAATATTTGTAGAAAAACACATACTTACAAAACTTTTCGACAATGTTGTTTACCAAGCTATATCTTGGTGTAAACTGTCTAATATTTTTACTTCCTATAGTTATACCTCACTCATTGCAAATTGGGAAGGTCTTTTGTAAATACCATGGATATTACTTCCCTTTTGTAAATTTCAATCATCAATGAAATTGTCTCTTATAAAAAAAAAAAAATCTAAAAAAATCTATAAAAAAAGAAAATGAACCATATTTTTACACCAATAAGGAGCTATGAAACAATAGGCTTTTAGGACTTCGAGTGGAGAGTTTCTTTGTCTTGAAAATCTTCAAGTTCAATTCATTCCAAATCTACCAAATAACTGGCCTCACAATGAATGACCAAATGATATTCTCTGTCGACTTGATGGATGATCTGAGCCAATCAAGAACCCCATTTTATAAGGACCAATTTCCTAAATCAGTGCTCCTTTGAGATAGGCGCTAACACTCCTCCTAAGTGAGTAAGCATGTTGGCCAAACCAAGAATTGAATGTTTCTTTCTGAACTGCACTGGTGACATGTTGCCTCTTTGAGATTCTTTCTTCTTTGGAGAAGGGATGTGCCTGTTGGGCGACCACTGAGGAATTTAATGTGTTTGTGTCTATGTCTAGAGTCAAGTGTATTCATCTACTCTACTTTTCTACATGAATGGGAATATCAGCAAACCATGGAAACATTTTTGTATCCATGGTTTGCATGGCCTTTATGTACATTAGGAAATCTTCAAGAGTAATTTAATTTAGAATTCTGTGGCTTATGAATGACCTTTTCATGATCCTCTCTTTGCATCTTTGATGTGCAACTACTTGCTAATGGTAAATCTATCATTCACCACCAAATCAGCTATTTTCAAATTGTATATTGATATGCAACTACATAAGGATGCTCGTGAGAGGTGTAATCTGAAGAAATTATGTACTCTACCTAGCCCATTTGTCAGAAAAGGTTATGTTTAATAAGTTCCACATCTATTAATCCTTATTTTGATTAACGAACACACCTTTCTAACTTTGTCATAATCCAAACCACAGTCTCCCAGTTGTGTACCGAGCAGATTCCTTTTCAGCCGAATGTCCCCCAAGTTCGGTCTTCTTTCAAGCAATCAAACCAGTTATCTTCCTAGATTGAGATCCTAAGTGTTAGACAAACACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGTATAAGCTCTCATGGTTTTGCTTTGGGCTTCCCAAAAGGCCTCATACCAATGGAGTTAGTATTTCTCACTTATAAACCCATGATTATTCCCTGAATTAGCCGATGTGGAATCCAACACCTCCCCTCGAACAAAGCACGCCTCCCCTTAATCGAGGCTCGACTCCTTTGGAGTCTTAGTCATTTTTTACTGCCTTCGTACCTTCGAGGAGGCTTGACTCCTTTTTTCTTTTTGGAGTCCTTTGTTCGACATTCGAGGATTTGCCAATCTATTGGCACGGCTAAGTTTAGGGCATGACTCTGATACCATGTTAGACGAACACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCAAAAGGCCTCATACCAATGGAGTTAGTATTCCTCACTTATAAACCCATGATCATTTCCTAAATTAGCCGATGTGGAATCCAACACTAAGCTCATTCCCCATCGTATAAAGCAAACCCTTTTCGGACAAACCTGTACATCTAGCAAGAACAGGCCAGGGGCAGAAGGAAGACTAGGTTACGTGGTTTCATTTGTTTTGTGTGTTCCAGGACTTCAAATTTTAGAAGTAGGAGTGTTATATAATCATACTTATAAAAATTCTTGTCATTATTTATTTGAAGCTGGAAATATCAATTATTAGGCGTTTTTACTATATATGTTGGTTTTTCCCTCTTCTGTCTTGGAAATTTAGGTTCAACTTTCGATGAGTGGCACCTGATCTCATCCATTTTTGCATCATATTCATTATCATTCTGAAAGTCGATAGTCTTCTTAGTTAATATTTCGTGTTTGGTTGTATTACATTACCCTTGCCTGATTTCCTTCTATTAATGTTGTTTTCATTAGTGCAACCATGGCTATCTACGATGTCATACAGCTCGTGAGAGCCGATGTCTCTACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGTGGTGGCACTAAAGGAAAGCGTCTTGCGATGCCCAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGGCAAGCAATAGACGTGGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATTACAAGAATCATTTCCGAGTTCACTGGCCATCCATTTGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCCCCCATAGAGGCTGTAGAATATGGATTGATTGATGGAGTGATCGACAAGGACAGCATTATACCTCTCGTACCCGTGCCAGAACGAGTGAAGGCAAGTTTAAATTATATAGAAATTAGTAAAGATCCCAAAAAATTCTTCTCACCAGATGTCCCCGACGACGAGATATACTAGTTTCAAGCGTTTCAATGTACCGTTTTCTAGGCTTTCGATTTATATGATTCACTTGTAGAATCTTATGTGTGAGCAAAGTCATGGTAAGCGGAAACCAGAAATATTCTGGAACTTGCTGAGCTCATCACCTTCGTCTCTACTTACCACAAGTTAAAGAGGTATTGGGAATTTGGACTCTTTTTCTATCTATGACATTATCAAATTAGCATTCTTGAGAAAGGAAAACTTGGCATTGAATCATATTTTTGTATTGGCAGTGTATATTTGTTGATTGATTCATGAATATCGTCATTTTTCCAATCGTCATTTGGCGATACGGTGATTTAA

mRNA sequence

TTTTTGTATTTCTGTATTTCTGTACTTCTCACCCAACCAAATCCCCAAACTCATCGTCTATCAGCTTCTTCCTGGTTTCAGAGCTGAAGTAGAGCAGTGCTGCAAATCCATGGAGCTTCTTTCACGCTGTTCTACTCTGATTCCTCATGCCTCCTCTCTCGGCCTTCTCAATTCTCATGGGAAACCGTCAAATTTCTATCCAAAGCTCAAATCCGGTCTTTCTTTTCCTTCGGCTTCATCGGTTCTCAAAACAACCGCTCGTAAGCCCTCGAGAACCCTAGCTACGTCCTCTTCTGTTCATATGACGGGTCCGCAAACGCCGGATGCCGCCCAGAGAGGCGCCGAGACTGACGCTATGGGACTGCTTCTCAGGGAGAGGATTGTCTTCTTGGGGAACAGCATCGATGATTTTGTGGCGGATGCTATTATCAGTCAGCTTTTGCTCTTGGATGCTCAGGACTCTACTAAAGATATCAGACTTTTCATTAATTCCTCTGGCGGCTCTCTCAGTGCAACCATGGCTATCTACGATGTCATACAGCTCGTGAGAGCCGATGTCTCTACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGTGGTGGCACTAAAGGAAAGCGTCTTGCGATGCCCAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGGCAAGCAATAGACGTGGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATTACAAGAATCATTTCCGAGTTCACTGGCCATCCATTTGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCCCCCATAGAGGCTGTAGAATATGGATTGATTGATGGAGTGATCGACAAGGACAGCATTATACCTCTCGTACCCGTGCCAGAACGAGTGAAGGCAAGTTTAAATTATATAGAAATTAGTAAAGATCCCAAAAAATTCTTCTCACCAGATGTCCCCGACGACGAGATATACTAGTTTCAAGCGTTTCAATGTACCGTTTTCTAGGCTTTCGATTTATATGATTCACTTGTAGAATCTTATGTGTGAGCAAAGTCATGGTAAGCGGAAACCAGAAATATTCTGGAACTTGCTGAGCTCATCACCTTCGTCTCTACTTACCACAAGTTAAAGAGGTATTGGGAATTTGGACTCTTTTTCTATCTATGACATTATCAAATTAGCATTCTTGAGAAAGGAAAACTTGGCATTGAATCATATTTTTGTATTGGCAGTGTATATTTGTTGATTGATTCATGAATATCGTCATTTTTCCAATCGTCATTTGGCGATACGGTGATTTAA

Coding sequence (CDS)

ATGGAGCTTCTTTCACGCTGTTCTACTCTGATTCCTCATGCCTCCTCTCTCGGCCTTCTCAATTCTCATGGGAAACCGTCAAATTTCTATCCAAAGCTCAAATCCGGTCTTTCTTTTCCTTCGGCTTCATCGGTTCTCAAAACAACCGCTCGTAAGCCCTCGAGAACCCTAGCTACGTCCTCTTCTGTTCATATGACGGGTCCGCAAACGCCGGATGCCGCCCAGAGAGGCGCCGAGACTGACGCTATGGGACTGCTTCTCAGGGAGAGGATTGTCTTCTTGGGGAACAGCATCGATGATTTTGTGGCGGATGCTATTATCAGTCAGCTTTTGCTCTTGGATGCTCAGGACTCTACTAAAGATATCAGACTTTTCATTAATTCCTCTGGCGGCTCTCTCAGTGCAACCATGGCTATCTACGATGTCATACAGCTCGTGAGAGCCGATGTCTCTACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGTGGTGGCACTAAAGGAAAGCGTCTTGCGATGCCCAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGGCAAGCAATAGACGTGGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATTACAAGAATCATTTCCGAGTTCACTGGCCATCCATTTGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCCCCCATAGAGGCTGTAGAATATGGATTGATTGATGGAGTGATCGACAAGGACAGCATTATACCTCTCGTACCCGTGCCAGAACGAGTGAAGGCAAGTTTAAATTATATAGAAATTAGTAAAGATCCCAAAAAATTCTTCTCACCAGATGTCCCCGACGACGAGATATACTAG

Protein sequence

MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSGLSFPSASSVLKTTARKPSRTLATSSSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGSLSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFFSPDVPDDEIY

Homology

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BLAST of CmaCh16G012180 vs. Swiss-Prot
Match: CLPP4_ARATH (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana GN=CLPP4 PE=1 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 4.1e-100
Identity = 207/301 (68.77%), Postives = 238/301 (79.07%), Query Frame = 1


Query: 1   MELLSRCSTLIP-------HASSLGLLNSHGKPSNFYPKLKSGLSFPSASSVLKTTARKP 60
           M  LS  S+L P       ++SS    +S  KP+N Y K    +S P     L+TT+  P
Sbjct: 1   MGTLSLSSSLKPSLVSSRLNSSSSASSSSFPKPNNLYLKPTKLISPP-----LRTTSPSP 60

Query: 61  SRTLATSSSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLL 120
            R    ++S+ M+  QT ++A RGAE+D MGLLLRERIVFLG+SIDDFVADAI+SQLLLL
Sbjct: 61  LRF--ANASIEMS--QTQESAIRGAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLL 120

Query: 121 DAQDSTKDIRLFINSSGGSLSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGK 180
           DA+D  KDI+LFINS GGSLSATMAIYDV+QLVRADVSTIALGIAASTASIILG GTKGK
Sbjct: 121 DAKDPKKDIKLFINSPGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGK 180

Query: 181 RLAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDR 240
           R AMPN RIM+HQPLGGASGQAIDVEIQA+E+MHNKNN+T II+  T   FE+V KDIDR
Sbjct: 181 RFAMPNTRIMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDR 240

Query: 241 DRYMSPIEAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFFSPDVPDDEI 295
           DRYMSPIEAVEYGLIDGVID DSIIPL PVP+RVK  +NY EISKDP KF +P++PDDEI
Sbjct: 241 DRYMSPIEAVEYGLIDGVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIPDDEI 292

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BLAST of CmaCh16G012180 vs. Swiss-Prot
Match: CLPP1_SYNSC (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9605) GN=clpP1 PE=3 SV=2)

HSP 1 Score: 212.6 bits (540), Expect = 5.7e-54
Identity = 104/187 (55.61%), Postives = 141/187 (75.40%), Query Frame = 1


Query: 68  PQTPDAAQRGAET-DAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFI 127
           P   + + RG    D    LLRERI+FLG  +DD VADA+++Q+L L+A+D  KDI+++I
Sbjct: 10  PTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYI 69

Query: 128 NSSGGSLSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQ 187
           NS GGS++A +AIYD +Q V  DV TI  G+AAS  + +L GGTKGKRLA+PNARIM+HQ
Sbjct: 70  NSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQ 129

Query: 188 PLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYG 247
           PLGGA GQA+D+EIQA+EI++ K  +  +++E TG P +K+ +D DRD ++SP EAVEYG
Sbjct: 130 PLGGAQGQAVDIEIQAKEILYLKETLNGLMAEHTGQPLDKISEDTDRDYFLSPAEAVEYG 189

Query: 248 LIDGVID 254
           LID V+D
Sbjct: 190 LIDRVVD 196

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BLAST of CmaCh16G012180 vs. Swiss-Prot
Match: CLPP2_SYNS9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9902) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.3e-53
Identity = 103/187 (55.08%), Postives = 140/187 (74.87%), Query Frame = 1


Query: 68  PQTPDAAQRGAET-DAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFI 127
           P   + + RG    D    LLRERI+FLG  +DD VADA+++Q+L L+A+D  KDI++++
Sbjct: 10  PTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYV 69

Query: 128 NSSGGSLSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQ 187
           NS GGS++A +AIYD +Q V  DV TI  G+AAS  + +L GGTKGKRLA+PNARIM+HQ
Sbjct: 70  NSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQ 129

Query: 188 PLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYG 247
           PLGGA GQA+D+EIQA+EI+  K  +  +++E TG P +K+ +D DRD ++SP EAVEYG
Sbjct: 130 PLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLDKISEDTDRDYFLSPAEAVEYG 189

Query: 248 LIDGVID 254
           LID V+D
Sbjct: 190 LIDRVVD 196

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BLAST of CmaCh16G012180 vs. Swiss-Prot
Match: CLPP1_PROMM (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (strain MIT 9313) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 8.3e-53
Identity = 103/187 (55.08%), Postives = 139/187 (74.33%), Query Frame = 1


Query: 68  PQTPDAAQRGAET-DAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFI 127
           P   + + RG    D    LLRERI+FLG  +DD VADA+++Q+L L+A+D  KDI+++I
Sbjct: 27  PTVVEQSGRGERAFDIYSRLLRERIIFLGTGVDDQVADALVAQMLFLEAEDPEKDIQIYI 86

Query: 128 NSSGGSLSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQ 187
           NS GGS++A +AIYD +Q V  DV TI  G+AAS  + +L GGTKGKRLA+PNARIM+HQ
Sbjct: 87  NSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLCGGTKGKRLALPNARIMIHQ 146

Query: 188 PLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYG 247
           PLGGA GQA+D+EIQA+EI+  K  +  +++E TG P  K+ +D DRD ++SP +AVEYG
Sbjct: 147 PLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLNKIAEDTDRDHFLSPAKAVEYG 206

Query: 248 LIDGVID 254
           LID V+D
Sbjct: 207 LIDRVVD 213

[Close]

BLAST of CmaCh16G012180 vs. Swiss-Prot
Match: CLPP2_SYNE7 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.8e-52
Identity = 103/191 (53.93%), Postives = 143/191 (74.87%), Query Frame = 1


Query: 68  PQTPDAAQRGAET-DAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFI 127
           P   + + RG    D    LLRERIVFLG  +DD VAD+I++QLL L+A+D  KDI+L+I
Sbjct: 39  PTVVEQSGRGERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYI 98

Query: 128 NSSGGSLSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQ 187
           NS GGS++A MAIYD +Q V  DV+TI  G+AAS  + +L GG +GKR+A+P+ARIM+HQ
Sbjct: 99  NSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQ 158

Query: 188 PLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYG 247
           PLGGA GQA+D+EIQAREI+++K+ +  ++++ TG P EK++ D DRD +MSP EA  YG
Sbjct: 159 PLGGAQGQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYG 218

Query: 248 LIDGVIDKDSI 258
           LID V+ + ++
Sbjct: 219 LIDQVLTRPTM 229

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BLAST of CmaCh16G012180 vs. TrEMBL
Match: A0A0A0L3S1_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G005040 PE=3 SV=1)

HSP 1 Score: 490.0 bits (1260), Expect = 2.1e-135
Identity = 257/294 (87.41%), Postives = 273/294 (92.86%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSGLSFPSASSVLKTTARKPSRTLATS 60
           MELLSRCSTL PHASSLGL NSHGKPSNF+PKLKS LSFPSASSVLKTTA KPSRTL   
Sbjct: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  SSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
            SV MT PQTPDAA+RGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDA+DSTK
Sbjct: 61  CSV-MTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINS+GGSLS+TMAIYDV+QLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA
Sbjct: 121 DIRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASG A+DVEIQAREIM NK+N+ RIISEFTGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFFSPDVPDDEIY 295
           EAVEYG IDGVID+DSIIPL+PVP++VK   NY E+ KDP KF +PDVPDDEI+
Sbjct: 241 EAVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIF 293

[Close]

BLAST of CmaCh16G012180 vs. TrEMBL
Match: A0A061G8D9_THECC (ATP-dependent Clp protease proteolytic subunit OS=Theobroma cacao GN=TCM_016742 PE=3 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 1.5e-109
Identity = 221/294 (75.17%), Postives = 240/294 (81.63%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSGLSFPSASSVLKTTARKPSRTLATS 60
           M+LLS  S L P  SSL L   H K S   P  K     PS   +  T      +   T 
Sbjct: 1   MDLLSLSSPLTPSLSSLQLKLKH-KTSFTSPNPK-----PSFLCLTPTPVSSSVKVKTTP 60

Query: 61  SSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
             + ++ PQ+P  A RGAETDAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDAQD  K
Sbjct: 61  KCLQLSAPQSPATAMRGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPNK 120

Query: 121 DIRLFINSSGGSLSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINS GGSLSATMAIYDV+QLVRADVST+ALGIAASTASIILGGGTKGKRLAMPN 
Sbjct: 121 DIRLFINSPGGSLSATMAIYDVVQLVRADVSTVALGIAASTASIILGGGTKGKRLAMPNT 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIM+HQPLGGASGQAIDVEIQA+EIMHNKNN+TRIIS FTG  FE+VQKDIDRDRYMSPI
Sbjct: 181 RIMIHQPLGGASGQAIDVEIQAQEIMHNKNNVTRIISGFTGRSFEQVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFFSPDVPDDEIY 295
           EAVEYG+IDGVID+DSIIPL PVPERVKASLNY EISKDP+KF +PD+PDDEIY
Sbjct: 241 EAVEYGIIDGVIDRDSIIPLAPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of CmaCh16G012180 vs. TrEMBL
Match: A0A0D2R6I8_GOSRA (ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii GN=B456_004G175000 PE=3 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 2.6e-109
Identity = 219/294 (74.49%), Postives = 244/294 (82.99%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSGLSFPSASSVLKTTARKPSRTLATS 60
           M LLS  S+L P  SSL L   H K S  +P      S P+++ +  +   KP     T+
Sbjct: 1   MGLLSLSSSLTPSFSSLHLKPKH-KLSLTFPNPSFVCSAPTSTPLSSSLKLKP-----TA 60

Query: 61  SSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
           +S+ ++ PQ+P  A RGAE DAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDAQD TK
Sbjct: 61  NSLKLSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPTK 120

Query: 121 DIRLFINSSGGSLSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINS GGSLSATMAIYDV+QLVRADVST+ +GIAASTASIILGGGTKGKR AMPN 
Sbjct: 121 DIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFAMPNT 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIM+HQPLGGASGQAIDVEIQAREIMHNKNN+TRIIS  TG PFE+V KDIDRDRYMSPI
Sbjct: 181 RIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFFSPDVPDDEIY 295
           EAVEYG+IDGVID+DSIIPL PVPERVKASLNY EISKDP+KF +PD+PDDEIY
Sbjct: 241 EAVEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of CmaCh16G012180 vs. TrEMBL
Match: A0A0B0PZ48_GOSAR (ATP-dependent Clp protease proteolytic subunit OS=Gossypium arboreum GN=F383_15783 PE=3 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 6.3e-108
Identity = 216/294 (73.47%), Postives = 240/294 (81.63%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSGLSFPSASSVLKTTARKPSRTLATS 60
           M LLS  S+L P   SL L   H K S  +P      S P++  +  +   KP     T+
Sbjct: 1   MGLLSLSSSLTPSFPSLHLKPKH-KLSLTFPNPSFACSAPTSKPLSSSLKLKP-----TA 60

Query: 61  SSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
           +S+  + PQ+P  A RGAE DAMGLLLRERIVFLGN+IDDF ADAIISQLLLLDAQD TK
Sbjct: 61  NSLKFSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFAADAIISQLLLLDAQDPTK 120

Query: 121 DIRLFINSSGGSLSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINS GGSLSATMAIYDV+QLVRADVST+ +GIAASTASIILGGGTKGKR AMPN 
Sbjct: 121 DIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFAMPNT 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIM+HQPLGGASGQAIDVEIQAREIMHNKNN+TRIIS  TG PFE+V KDIDRDRYMSPI
Sbjct: 181 RIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFFSPDVPDDEIY 295
           EA+EYG+IDGVID+DSIIPL PVPERVKASLNY EISKDP+KF +PD+PDDEIY
Sbjct: 241 EALEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of CmaCh16G012180 vs. TrEMBL
Match: W9RI69_9ROSA (ATP-dependent Clp protease proteolytic subunit OS=Morus notabilis GN=L484_025970 PE=3 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 2.0e-106
Identity = 216/298 (72.48%), Postives = 248/298 (83.22%), Query Frame = 1


Query: 1   MELLSRCSTL----IPHASSLGLLNSHGKPSNFYPKLKSGLSFPSASSVLKTTARKPSRT 60
           M++LS  S +    +P++S    ++SH   S+   K K   SF  A     T++ KP ++
Sbjct: 1   MDVLSLSSPIPSFKLPNSSRPKPISSHLPISSL--KTKRASSF--AKCFQSTSSSKP-QS 60

Query: 61  LATSSSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQ 120
           L T S +  + PQTPD A R AE+DAMGLLLRERIVFLG+SIDDF+ADAIISQLLLLDAQ
Sbjct: 61  LLTPSLLLASSPQTPDTAMRSAESDAMGLLLRERIVFLGSSIDDFIADAIISQLLLLDAQ 120

Query: 121 DSTKDIRLFINSSGGSLSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGKRLA 180
           DSTKDI+LFINS+GGSLSATMAIYDV+QLVRADVST+ALGIAASTAS+ILGGGTKGKR A
Sbjct: 121 DSTKDIKLFINSTGGSLSATMAIYDVVQLVRADVSTVALGIAASTASVILGGGTKGKRFA 180

Query: 181 MPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRY 240
           MPN RIM+HQPLGGASGQAIDVEIQAREIMHNKNN+T II+  TG  FE+VQKDIDRDRY
Sbjct: 181 MPNTRIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTSIIAHCTGRTFEQVQKDIDRDRY 240

Query: 241 MSPIEAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFFSPDVPDDEIY 295
           MSPIEAVEYGL+DGVID+DSIIPLVPVPERVKA + Y EISKDP+KF +PDVPDDEIY
Sbjct: 241 MSPIEAVEYGLLDGVIDRDSIIPLVPVPERVKARITYEEISKDPRKFLTPDVPDDEIY 293

[Close]

BLAST of CmaCh16G012180 vs. TAIR10
Match: AT5G45390.1 (AT5G45390.1 CLP protease P4)

HSP 1 Score: 365.9 bits (938), Expect = 2.3e-101
Identity = 207/301 (68.77%), Postives = 238/301 (79.07%), Query Frame = 1


Query: 1   MELLSRCSTLIP-------HASSLGLLNSHGKPSNFYPKLKSGLSFPSASSVLKTTARKP 60
           M  LS  S+L P       ++SS    +S  KP+N Y K    +S P     L+TT+  P
Sbjct: 1   MGTLSLSSSLKPSLVSSRLNSSSSASSSSFPKPNNLYLKPTKLISPP-----LRTTSPSP 60

Query: 61  SRTLATSSSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLL 120
            R    ++S+ M+  QT ++A RGAE+D MGLLLRERIVFLG+SIDDFVADAI+SQLLLL
Sbjct: 61  LRF--ANASIEMS--QTQESAIRGAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLL 120

Query: 121 DAQDSTKDIRLFINSSGGSLSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGK 180
           DA+D  KDI+LFINS GGSLSATMAIYDV+QLVRADVSTIALGIAASTASIILG GTKGK
Sbjct: 121 DAKDPKKDIKLFINSPGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGK 180

Query: 181 RLAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDR 240
           R AMPN RIM+HQPLGGASGQAIDVEIQA+E+MHNKNN+T II+  T   FE+V KDIDR
Sbjct: 181 RFAMPNTRIMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDR 240

Query: 241 DRYMSPIEAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFFSPDVPDDEI 295
           DRYMSPIEAVEYGLIDGVID DSIIPL PVP+RVK  +NY EISKDP KF +P++PDDEI
Sbjct: 241 DRYMSPIEAVEYGLIDGVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIPDDEI 292

[Close]

BLAST of CmaCh16G012180 vs. TAIR10
Match: AT1G66670.1 (AT1G66670.1 CLP protease proteolytic subunit 3)

HSP 1 Score: 198.0 bits (502), Expect = 8.3e-51
Identity = 112/241 (46.47%), Postives = 153/241 (63.49%), Query Frame = 1


Query: 19  LLNSHGKPSNF------YPKLKSGLSFPSASSVLKTTARKPSRTLATSSSVHMTGPQTPD 78
           LLN  GK  NF       PK        S+ S+ K   +  S     SS    +  Q+P 
Sbjct: 18  LLNP-GKNLNFPIRNHRIPKTSKPFCVRSSMSLSKPPRQTLSSNWDVSSFSIDSVAQSPS 77

Query: 79  AAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGS 138
                 E D   +LLR+RIVFLG+ +DD  AD +ISQLLLLDA+DS +DI LFINS GGS
Sbjct: 78  RLPSFEELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGS 137

Query: 139 LSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQPLGGAS 198
           ++A M IYD ++  +ADVST+ LG+AAS  + +L  G+KGKR  MPN+++M+HQPLG A 
Sbjct: 138 ITAGMGIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAG 197

Query: 199 GQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVI 254
           G+A ++ I+ RE+M++K  + +I S  TG P  +++ D DRD +++P EA EYGLID VI
Sbjct: 198 GKATEMSIRIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVI 257

[Close]

BLAST of CmaCh16G012180 vs. TAIR10
Match: AT1G02560.1 (AT1G02560.1 nuclear encoded CLP protease 5)

HSP 1 Score: 179.5 bits (454), Expect = 3.0e-45
Identity = 87/167 (52.10%), Postives = 124/167 (74.25%), Query Frame = 1


Query: 86  LLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGSLSATMAIYDVIQL 145
           L + RI+  G ++DD +A+ I++QLL LDA D TKDI +++NS GGS++A MAI+D ++ 
Sbjct: 119 LFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRH 178

Query: 146 VRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQPLGGASGQAIDVEIQAREI 205
           +R DVST+ +G+AAS  + +L  GTKGKR ++PN+RIM+HQPLGGA G   D++IQA E+
Sbjct: 179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM 238

Query: 206 MHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVI 253
           +H+K N+   ++  TG   EK+ +D DRD +MS  EA EYGLIDGVI
Sbjct: 239 LHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 285

[Close]

BLAST of CmaCh16G012180 vs. TAIR10
Match: AT1G11750.2 (AT1G11750.2 CLP protease proteolytic subunit 6)

HSP 1 Score: 158.7 bits (400), Expect = 5.5e-39
Identity = 92/245 (37.55%), Postives = 136/245 (55.51%), Query Frame = 1


Query: 27  SNFYPKLKSGLSFPSASSVLKTTARKPSR------TLATSSSVHM----------TGPQT 86
           S +   LK+GLS   + S +K   + PS        +  SS+V+             P  
Sbjct: 44  SPYGDSLKAGLSSNVSGSPIKIDNKAPSSLPLPILNILKSSTVYFIFGVIEAKKGNPPVM 103

Query: 87  PDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFINSSG 146
           P     G   D   +L R RI+F+G  I+  VA  +ISQL+ L + D   DI +++N  G
Sbjct: 104 PSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDILMYLNCPG 163

Query: 147 GSLSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQPLGG 206
           GS  + +AIYD +  ++  V T+A G+AAS  +++L GG KG R AMPN R+M+HQP  G
Sbjct: 164 GSTYSVLAIYDCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVMIHQPQTG 223

Query: 207 ASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDG 256
             G   DV  Q  E +  +  I R+ + FTG P EKVQ+  +RDR++S  EA+E+GLIDG
Sbjct: 224 CGGHVEDVRRQVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEALEFGLIDG 283

[Close]

BLAST of CmaCh16G012180 vs. TAIR10
Match: AT5G23140.1 (AT5G23140.1 nuclear-encoded CLP protease P7)

HSP 1 Score: 156.4 bits (394), Expect = 2.8e-38
Identity = 81/215 (37.67%), Postives = 136/215 (63.26%), Query Frame = 1


Query: 41  SASSVLKTTARKPSRTLATSSSVHMTGPQTPDAAQRGAET-DAMGLLLRERIVFLGNSID 100
           S + +L +T    + ++AT    +   P   + + RG    D    LL+ERI+ +   I+
Sbjct: 7   SGAKMLSSTPSSMATSIATGRRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPIN 66

Query: 101 DFVADAIISQLLLLDAQDSTKDIRLFINSSGGSLSATMAIYDVIQLVRADVSTIALGIAA 160
           D  +  +++QLL L++++ +K I +++NS GG ++A +AIYD +Q +R+ +STI LG AA
Sbjct: 67  DDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPISTICLGQAA 126

Query: 161 STASIILGGGTKGKRLAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEF 220
           S AS++L  G KG+R ++PNA +M+HQP GG SGQA D+ I  ++I+   + +  +  + 
Sbjct: 127 SMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAKDITIHTKQIVRVWDALNELYVKH 186

Query: 221 TGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVIDK 255
           TG P + V  ++DRD +M+P EA  +G+ID VID+
Sbjct: 187 TGQPLDVVANNMDRDHFMTPEEAKAFGIIDEVIDE 221

[Close]

BLAST of CmaCh16G012180 vs. NCBI nr
Match: gi|659095454|ref|XP_008448589.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucumis melo])

HSP 1 Score: 513.1 bits (1320), Expect = 3.3e-142
Identity = 271/294 (92.18%), Postives = 282/294 (95.92%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSGLSFPSASSVLKTTARKPSRTLATS 60
           MELLSRCSTLIP ASSLGL NSHGKPSNF+PKLKS LSFPSASSVLKTTA KPSRTL   
Sbjct: 1   MELLSRCSTLIPQASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  SSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
            SV MT PQTPDA++RGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK
Sbjct: 61  CSV-MTAPQTPDASRRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINS+GGSLSATMAIYDV+QLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA
Sbjct: 121 DIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASGQAIDVEIQAREIMHNKNN+TRIISEFTGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFFSPDVPDDEIY 295
           EAVEYGLIDGVID+DSIIPLVPVPERVKA+LNY E+SKDP+KF +PDVPDDEIY
Sbjct: 241 EAVEYGLIDGVIDRDSIIPLVPVPERVKATLNYEEMSKDPRKFLTPDVPDDEIY 293

[Close]

BLAST of CmaCh16G012180 vs. NCBI nr
Match: gi|449456777|ref|XP_004146125.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucumis sativus])

HSP 1 Score: 490.0 bits (1260), Expect = 3.0e-135
Identity = 257/294 (87.41%), Postives = 273/294 (92.86%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSGLSFPSASSVLKTTARKPSRTLATS 60
           MELLSRCSTL PHASSLGL NSHGKPSNF+PKLKS LSFPSASSVLKTTA KPSRTL   
Sbjct: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  SSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
            SV MT PQTPDAA+RGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDA+DSTK
Sbjct: 61  CSV-MTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINS+GGSLS+TMAIYDV+QLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA
Sbjct: 121 DIRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASG A+DVEIQAREIM NK+N+ RIISEFTGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFFSPDVPDDEIY 295
           EAVEYG IDGVID+DSIIPL+PVP++VK   NY E+ KDP KF +PDVPDDEI+
Sbjct: 241 EAVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIF 293

[Close]

BLAST of CmaCh16G012180 vs. NCBI nr
Match: gi|590680694|ref|XP_007040931.1| (ATP-dependent Clp protease proteolytic subunit 4 [Theobroma cacao])

HSP 1 Score: 404.1 bits (1037), Expect = 2.1e-109
Identity = 221/294 (75.17%), Postives = 240/294 (81.63%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSGLSFPSASSVLKTTARKPSRTLATS 60
           M+LLS  S L P  SSL L   H K S   P  K     PS   +  T      +   T 
Sbjct: 1   MDLLSLSSPLTPSLSSLQLKLKH-KTSFTSPNPK-----PSFLCLTPTPVSSSVKVKTTP 60

Query: 61  SSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
             + ++ PQ+P  A RGAETDAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDAQD  K
Sbjct: 61  KCLQLSAPQSPATAMRGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPNK 120

Query: 121 DIRLFINSSGGSLSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINS GGSLSATMAIYDV+QLVRADVST+ALGIAASTASIILGGGTKGKRLAMPN 
Sbjct: 121 DIRLFINSPGGSLSATMAIYDVVQLVRADVSTVALGIAASTASIILGGGTKGKRLAMPNT 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIM+HQPLGGASGQAIDVEIQA+EIMHNKNN+TRIIS FTG  FE+VQKDIDRDRYMSPI
Sbjct: 181 RIMIHQPLGGASGQAIDVEIQAQEIMHNKNNVTRIISGFTGRSFEQVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFFSPDVPDDEIY 295
           EAVEYG+IDGVID+DSIIPL PVPERVKASLNY EISKDP+KF +PD+PDDEIY
Sbjct: 241 EAVEYGIIDGVIDRDSIIPLAPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of CmaCh16G012180 vs. NCBI nr
Match: gi|823151327|ref|XP_012475491.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Gossypium raimondii])

HSP 1 Score: 403.3 bits (1035), Expect = 3.7e-109
Identity = 219/294 (74.49%), Postives = 244/294 (82.99%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSGLSFPSASSVLKTTARKPSRTLATS 60
           M LLS  S+L P  SSL L   H K S  +P      S P+++ +  +   KP     T+
Sbjct: 1   MGLLSLSSSLTPSFSSLHLKPKH-KLSLTFPNPSFVCSAPTSTPLSSSLKLKP-----TA 60

Query: 61  SSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
           +S+ ++ PQ+P  A RGAE DAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDAQD TK
Sbjct: 61  NSLKLSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPTK 120

Query: 121 DIRLFINSSGGSLSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINS GGSLSATMAIYDV+QLVRADVST+ +GIAASTASIILGGGTKGKR AMPN 
Sbjct: 121 DIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFAMPNT 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIM+HQPLGGASGQAIDVEIQAREIMHNKNN+TRIIS  TG PFE+V KDIDRDRYMSPI
Sbjct: 181 RIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFFSPDVPDDEIY 295
           EAVEYG+IDGVID+DSIIPL PVPERVKASLNY EISKDP+KF +PD+PDDEIY
Sbjct: 241 EAVEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of CmaCh16G012180 vs. NCBI nr
Match: gi|728849303|gb|KHG28746.1| (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic -like protein [Gossypium arboreum])

HSP 1 Score: 398.7 bits (1023), Expect = 9.0e-108
Identity = 216/294 (73.47%), Postives = 240/294 (81.63%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSGLSFPSASSVLKTTARKPSRTLATS 60
           M LLS  S+L P   SL L   H K S  +P      S P++  +  +   KP     T+
Sbjct: 1   MGLLSLSSSLTPSFPSLHLKPKH-KLSLTFPNPSFACSAPTSKPLSSSLKLKP-----TA 60

Query: 61  SSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
           +S+  + PQ+P  A RGAE DAMGLLLRERIVFLGN+IDDF ADAIISQLLLLDAQD TK
Sbjct: 61  NSLKFSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFAADAIISQLLLLDAQDPTK 120

Query: 121 DIRLFINSSGGSLSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINS GGSLSATMAIYDV+QLVRADVST+ +GIAASTASIILGGGTKGKR AMPN 
Sbjct: 121 DIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFAMPNT 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIM+HQPLGGASGQAIDVEIQAREIMHNKNN+TRIIS  TG PFE+V KDIDRDRYMSPI
Sbjct: 181 RIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFFSPDVPDDEIY 295
           EA+EYG+IDGVID+DSIIPL PVPERVKASLNY EISKDP+KF +PD+PDDEIY
Sbjct: 241 EALEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

The following BLAST results are available for this feature:

BLAST of CmaCh16G012180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLPP4_ARATH	4.1e-100	68.77	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis t...	[more]
CLPP1_SYNSC	5.7e-54	55.61	ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC...	[more]
CLPP2_SYNS9	1.3e-53	55.08	ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC...	[more]
CLPP1_PROMM	8.3e-53	55.08	ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (str...	[more]
CLPP2_SYNE7	1.8e-52	53.93	ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (str...	[more]

BLAST of CmaCh16G012180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3S1_CUCSA	2.1e-135	87.41	ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G00504...	[more]
A0A061G8D9_THECC	1.5e-109	75.17	ATP-dependent Clp protease proteolytic subunit OS=Theobroma cacao GN=TCM_016742 ...	[more]
A0A0D2R6I8_GOSRA	2.6e-109	74.49	ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii GN=B456_00...	[more]
A0A0B0PZ48_GOSAR	6.3e-108	73.47	ATP-dependent Clp protease proteolytic subunit OS=Gossypium arboreum GN=F383_157...	[more]
W9RI69_9ROSA	2.0e-106	72.48	ATP-dependent Clp protease proteolytic subunit OS=Morus notabilis GN=L484_025970...	[more]

BLAST of CmaCh16G012180 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45390.1	2.3e-101	68.77	CLP protease P4	[more]
AT1G66670.1	8.3e-51	46.47	CLP protease proteolytic subunit 3	[more]
AT1G02560.1	3.0e-45	52.10	nuclear encoded CLP protease 5	[more]
AT1G11750.2	5.5e-39	37.55	CLP protease proteolytic subunit 6	[more]
AT5G23140.1	2.8e-38	37.67	nuclear-encoded CLP protease P7	[more]

BLAST of CmaCh16G012180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095454\|ref\|XP_008448589.1\|	3.3e-142	92.18	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucu...	[more]
gi\|449456777\|ref\|XP_004146125.1\|	3.0e-135	87.41	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucu...	[more]
gi\|590680694\|ref\|XP_007040931.1\|	2.1e-109	75.17	ATP-dependent Clp protease proteolytic subunit 4 [Theobroma cacao]	[more]
gi\|823151327\|ref\|XP_012475491.1\|	3.7e-109	74.49	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Goss...	[more]
gi\|728849303\|gb\|KHG28746.1\|	9.0e-108	73.47	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic -like protein [G...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001907	ClpP
IPR023562	ClpP/TepA

Vocabulary: **Molecular Function**
Term	Definition
GO:0004252	serine-type endopeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0006508	proteolysis
biological_process	GO:0048510	regulation of timing of transition from vegetative to reproductive phase
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009840	chloroplastic endopeptidase Clp complex
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004252	serine-type endopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G012180.1	CmaCh16G012180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 152..169 score: 2.8E-41coord: 121..141 score: 2.8E-41coord: 173..192 score: 2.8E-41coord: 81..96 score: 2.8E-41coord: 230..249 score: 2.8
IPR001907	ATP-dependent Clp protease proteolytic subunit	HAMAP	MF_00444	ClpP	coord: 66..255 score: 36
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 2..294 score: 3.9E
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 80..254 score: 2.0
None	No IPR available	PANTHER	PTHR10381:SF24	SUBFAMILY NOT NAMED	coord: 2..294 score: 3.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G012180	Cucsa.322370	Cucumber (Gy14) v1	cgycmaB0887
CmaCh16G012180	Cla008866	Watermelon (97103) v1	cmawmB292
CmaCh16G012180	Csa3G005040	Cucumber (Chinese Long) v2	cmacuB326
CmaCh16G012180	MELO3C013793	Melon (DHL92) v3.5.1	cmameB291
CmaCh16G012180	ClCG10G001000	Watermelon (Charleston Gray)	cmawcgB284
CmaCh16G012180	CSPI03G01000	Wild cucumber (PI 183967)	cmacpiB332
CmaCh16G012180	CmoCh06G006060	Cucurbita moschata (Rifu)	cmacmoB344
CmaCh16G012180	CmoCh16G012620	Cucurbita moschata (Rifu)	cmacmoB323
CmaCh16G012180	Lsi07G011300	Bottle gourd (USVL1VR-Ls)	cmalsiB324
CmaCh16G012180	Cp4.1LG14g10100	Cucurbita pepo (Zucchini)	cmacpeB345
CmaCh16G012180	Cp4.1LG08g09080	Cucurbita pepo (Zucchini)	cmacpeB363
CmaCh16G012180	MELO3C013793.2	Melon (DHL92) v3.6.1	cmamedB342
CmaCh16G012180	CsaV3_3G001040	Cucumber (Chinese Long) v3	cmacucB0380
CmaCh16G012180	Cla97C10G185620	Watermelon (97103) v2	cmawmbB337
CmaCh16G012180	BhiUN179G3	Wax gourd	cmawgoB0450
CmaCh16G012180	CsGy3G000950	Cucumber (Gy14) v2	cgybcmaB339
CmaCh16G012180	Carg23564	Silver-seed gourd	carcmaB1453
CmaCh16G012180	Carg16286	Silver-seed gourd	carcmaB0956

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G012180	Cucurbita maxima (Rimu)	cmacmaB357