Cucsa.322370 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.322370
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	ATP-dependent Clp protease proteolytic subunit
Location	scaffold03080 : 2139753 .. 2143173 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTCCGTTTGACAAGTGAAGCAGAGCAGTGGCGTAAATCCATGGAGCTTCTTTCACGCTGTTCAACTCTCACTCCTCACGCCTCCTCTCTCGGCCTTCCCAATTCTCATGGAAAACCATCTAATTTCTTCCCCAAGCTCAAATCCACTCTCTCTTTTCCTTCGGCTTCATCAGTACTCAAAACAACCGCTCTTAAACCCTCCAGAACCCTACCTCCGCCGTGCTCCGTTATGACGGCTCCTCAGACGCCGGATGCCGCCCGGAGAGGCGCTGAAACTGACGCCATGGGATTGCTTCTCAGGGAGAGGATCGTCTTCTTGGGGAACAGCATTGATGATTTTGTAGCTGATGCTATTATCAGTCAGCTCTTACTCTTGGATGCCAAGGACTCTACTAAAGATATTAGACTCTTCATTAATTCCGCTGGCGGCTCTCTCAGGTATTCATGAGCTGATTTTTCGTGCATAACGCAGTAGATATGGAATATGTGATTTAGGCTTGTTTTTGTTCTTCCCAGACGATTTAGGTAACTTGATTTCTACGAATATGCGTTTTTTTGCCTAATTTTGTCGAGATTTTTCTTCACCTGCATCACAAACAGTTAGCCCACTATTTGGTGCATTCATTCATGTGATGACTCTCGTTCTAGAGTTGACATTAATAAACAACCAGCTAAAATAATGCTTAACCATTATCGAATAGATGGAAAAGAATCAGGTAAATCTTTGTAGAGATGCATTTTGTTTGAAGTTTGAAACCTTTGGCTCGTATCCACTTGCAAATCTTCTAACCTCCAGCTGAATAATATAAAAGGCAGATTGGAAGAACCCTTTTTATCTTCGGTTTCGGGAGGAAAAGACTTAGTTCTTCATTTGGACTATGGCTCACAAGAGGCTAAACACTTGTTGGATTAAAAAGAAGAACCCATCCATGGCCTTATCTCCGCCTGTTTGCTCTTCTAATCTAATGAAGAAACGCTCGACCATCTTTTATTTTATTGGGAATATGTTGCACAGAAGATTCACTTGCCATTTTATTTGTCTTGGGCTGGAAACAATTCTACTGATGAAATGAGATGATACATAAAGGTAAACTCATTCAAAAAATTTATCCAGTTGGATATAAAAGAATTTAAGCTGCATATATTAGAAGTATCCATACTTCAAGTAGGAAGCTTTATTTTTAAAAAAAAATTATTGAGTTCTTTTCATTCTAAATCTTCCAAATAACTGCCTTCAACCAATGGGTATTCTATGTTGACCTGAACAGATGATCTATCAGCTGCAAATTTAGCCAATAAAAAATCCCATTTTCTATAAGGGCCAATTTCTCAAATCAGTACTTCTTTGGGAAAGTGCCAACTCCTCCTTCTATGAGAGTAAGCATGTAGACCTAATCAAAGTTCTTTTGAACAAGTAAAAATCCAGGCCTTCTTGTTCATTCTCTATGAGATTCTCAGTGGAGGTGGTGGAAGTTGAAGATACCAAAGGTTCCCTAATTACTACAGTATGGTAGTAATGCATCTATCATCGTTTACCCGTCTCTCCCTTTTCATTTATGGTAAATTTTGAATAACTTGATAAGGGTTGTGAAAAAGAACTGAATTCAGAATGTATGTTGTCAAAATGTCTCATATTATTATCTATTTGTATCATGTTTTTCTTTGCATTTTTTAACACTTAGTCCTCACAGTATAAACTTATAATGAAATCATGTAATCTATATATGTAATATGCAACCAATCTAATTTTATGCATTGGAAACATTCTAGAGTAATTTAATTTAGATTTCTGTGCTTTTTGGATGACCTTTTGATTATCTTCTCTTCGCATCTTTGATGTGCAGCCACTTTCTTTTCTAATGATAAATCTATCATGCACTACAAAACCATAATTGTTCTAAATGTATACTGAAATGTAACTTAAGGATGCCCGTGAGACTTAAGAGTTGACAACTGAAGAAATTATGTGCTTTGCCTAACTCAGTTCATTTTTCAGAAAATGTTATGTTTTTCAGTTCCACAACCACTTATCCTCGTGTTGATAAGGAAAACACCTTCCAACTTTCTCGTATCTCAAACCCAGTTTTTCAATTGTCTATCAAACAGTACCTTCTCAGCCCATTGCCCCACAATTTCGTGCGTGTCAAGCAATCACTTACAATCTCTCCTTTTGTACTAGCAATGGAGTAGATATTGTGAAACACCTAACTCAAAGATGGAATTAAACCAGCTATCTTCCTAGATTCTAAGCTCATTTCCCATTTTATAAAGAAAACCCTGTTCCGACGAACCCATTCATCTAGCTAAATAGGGCCAAGGGCAAAACACAGATTTGCTTAAATAGTTTTATTTGTTTTTTGTATAGCAGAACTTAAAATTTTAGAAGCGGGAGTGTCATATTCACAACTTGTGAATATATGAATCCTCTTGTTATTTGAAGCCTGAATTATTGATTACTAGGCTTTTTAAATAAATAAGTATATTTTGTCTTCCCCTCTCGGTCTTGAGAATTTAGATTAAGAGGACAATCAGTGGTACCTGATCTCATCTAGTTTTGCATCATGTTCTTCGTCACTTTGAAAGTTTATATTTTTCTTAGTTATTTGGTGTTTTGTTGTAGGACATTAGCCTTGATTGACTTTCTTCTATTAATGGTGTTTTTGTTAGTTCTACCATGGCTATCTACGATGTCGTACAGCTTGTGAGGGCTGATGTCTCCACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTTGGCGGTGGCACCAAAGGAAAGCGTCTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGAGCGAGTGGGCTAGCATTGGATGTGGAAATTCAAGCACGCGAAATCATGCAGAACAAGGACAACGTTATAAGAATCATCTCTGAATTCACTGGCCATCCATTTGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCACCCATAGAGGCTGTAGAATATGGATTTATTGATGGAGTAATCGACCAAGACAGCATTATACCGCTCATGCCAGTGCCCGATAAAGTGAAAGGAAAATTCAATTATACAGAAGTTATGAAAGATCCCATGAAGTTCTTGACACCAGACGTTCCTGATGACGAGATATATTAGATTTGGGCGTTCTGGCAAACTTTTCTCTAGGGCTTTGATTTAAATGTTTTACATGTAGGATCTTATGTGTAAGCAAAGTCATGGTGGGTGGAAAGGGAAACCAGAATATGATGGAACTTGATGAGCTAATCATCTTTAGAGTTTCAACTTTTAGCGAAATGTCTCTACTTACCAGAAGTTAAAAAGGTACTTGGAGTTTGGACTCTTTTCTTTGGCTATGACATTCTTCAAATGAGCAAAATGAGGATGGAAAAATTGGTATCGATTTG

mRNA sequence

TCCTCCGTTTGACAAGTGAAGCAGAGCAGTGGCGTAAATCCATGGAGCTTCTTTCACGCTGTTCAACTCTCACTCCTCACGCCTCCTCTCTCGGCCTTCCCAATTCTCATGGAAAACCATCTAATTTCTTCCCCAAGCTCAAATCCACTCTCTCTTTTCCTTCGGCTTCATCAGTACTCAAAACAACCGCTCTTAAACCCTCCAGAACCCTACCTCCGCCGTGCTCCGTTATGACGGCTCCTCAGACGCCGGATGCCGCCCGGAGAGGCGCTGAAACTGACGCCATGGGATTGCTTCTCAGGGAGAGGATCGTCTTCTTGGGGAACAGCATTGATGATTTTGTAGCTGATGCTATTATCAGTCAGCTCTTACTCTTGGATGCCAAGGACTCTACTAAAGATATTAGACTCTTCATTAATTCCGCTGGCGGCTCTCTCAGTTCTACCATGGCTATCTACGATGTCGTACAGCTTGTGAGGGCTGATGTCTCCACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTTGGCGGTGGCACCAAAGGAAAGCGTCTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGAGCGAGTGGGCTAGCATTGGATGTGGAAATTCAAGCACGCGAAATCATGCAGAACAAGGACAACGTTATAAGAATCATCTCTGAATTCACTGGCCATCCATTTGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCACCCATAGAGGCTGTAGAATATGGATTTATTGATGGAGTAATCGACCAAGACAGCATTATACCGCTCATGCCAGTGCCCGATAAAGTGAAAGGAAAATTCAATTATACAGAAGTTATGAAAGATCCCATGAAGTTCTTGACACCAGACGTTCCTGATGACGAGATATATTAGATTTGGGCGTTCTGGCAAACTTTTCTCTAGGGCTTTGATTTAAATGTTTTACATGTAGGATCTTATGTGTAAGCAAAGTCATGGTGGGTGGAAAGGGAAACCAGAATATGATGGAACTTGATGAGCTAATCATCTTTAGAGTTTCAACTTTTAGCGAAATGTCTCTACTTACCAGAAGTTAAAAAGGTACTTGGAGTTTGGACTCTTTTCTTTGGCTATGACATTCTTCAAATGAGCAAAATGAGGATGGAAAAATTGGTATCGATTTG

Coding sequence (CDS)

ATGGAGCTTCTTTCACGCTGTTCAACTCTCACTCCTCACGCCTCCTCTCTCGGCCTTCCCAATTCTCATGGAAAACCATCTAATTTCTTCCCCAAGCTCAAATCCACTCTCTCTTTTCCTTCGGCTTCATCAGTACTCAAAACAACCGCTCTTAAACCCTCCAGAACCCTACCTCCGCCGTGCTCCGTTATGACGGCTCCTCAGACGCCGGATGCCGCCCGGAGAGGCGCTGAAACTGACGCCATGGGATTGCTTCTCAGGGAGAGGATCGTCTTCTTGGGGAACAGCATTGATGATTTTGTAGCTGATGCTATTATCAGTCAGCTCTTACTCTTGGATGCCAAGGACTCTACTAAAGATATTAGACTCTTCATTAATTCCGCTGGCGGCTCTCTCAGTTCTACCATGGCTATCTACGATGTCGTACAGCTTGTGAGGGCTGATGTCTCCACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTTGGCGGTGGCACCAAAGGAAAGCGTCTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGAGCGAGTGGGCTAGCATTGGATGTGGAAATTCAAGCACGCGAAATCATGCAGAACAAGGACAACGTTATAAGAATCATCTCTGAATTCACTGGCCATCCATTTGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCACCCATAGAGGCTGTAGAATATGGATTTATTGATGGAGTAATCGACCAAGACAGCATTATACCGCTCATGCCAGTGCCCGATAAAGTGAAAGGAAAATTCAATTATACAGAAGTTATGAAAGATCCCATGAAGTTCTTGACACCAGACGTTCCTGATGACGAGATATATTAG

Protein sequence

MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPPCSVMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKDIRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIY*

Homology

[Close]

BLAST of Cucsa.322370 vs. Swiss-Prot
Match: CLPP4_ARATH (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana GN=CLPP4 PE=1 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.8e-100
Identity = 201/295 (68.14%), Postives = 228/295 (77.29%), Query Frame = 1


Query: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSA--SSVLKTTALKPSRTLP 60
           M  LS  S+L P   S  L +S    S+ FPK  +    P+   S  L+TT+  P R   
Sbjct: 1   MGTLSLSSSLKPSLVSSRLNSSSSASSSSFPKPNNLYLKPTKLISPPLRTTSPSPLRFAN 60

Query: 61  PPCSVMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDST 120
               +    QT ++A RGAE+D MGLLLRERIVFLG+SIDDFVADAI+SQLLLLDAKD  
Sbjct: 61  ASIEMS---QTQESAIRGAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPK 120

Query: 121 KDIRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPN 180
           KDI+LFINS GGSLS+TMAIYDVVQLVRADVSTIALGIAASTASIILG GTKGKR AMPN
Sbjct: 121 KDIKLFINSPGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPN 180

Query: 181 ARIMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSP 240
            RIM+HQPLGGASG A+DVEIQA+E+M NK+NV  II+  T   FE+V KDIDRDRYMSP
Sbjct: 181 TRIMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSP 240

Query: 241 IEAVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIY 294
           IEAVEYG IDGVID DSIIPL PVPD+VK + NY E+ KDPMKFLTP++PDDEIY
Sbjct: 241 IEAVEYGLIDGVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIPDDEIY 292

[Close]

BLAST of Cucsa.322370 vs. Swiss-Prot
Match: CLPP1_SYNSC (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9605) GN=clpP1 PE=3 SV=2)

HSP 1 Score: 208.0 bits (528), Expect = 1.4e-52
Identity = 101/187 (54.01%), Postives = 139/187 (74.33%), Query Frame = 1


Query: 67  PQTPDAARRGAET-DAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKDIRLFI 126
           P   + + RG    D    LLRERI+FLG  +DD VADA+++Q+L L+A+D  KDI+++I
Sbjct: 10  PTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYI 69

Query: 127 NSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQ 186
           NS GGS+++ +AIYD +Q V  DV TI  G+AAS  + +L GGTKGKRLA+PNARIM+HQ
Sbjct: 70  NSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQ 129

Query: 187 PLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYG 246
           PLGGA G A+D+EIQA+EI+  K+ +  +++E TG P +K+ +D DRD ++SP EAVEYG
Sbjct: 130 PLGGAQGQAVDIEIQAKEILYLKETLNGLMAEHTGQPLDKISEDTDRDYFLSPAEAVEYG 189

Query: 247 FIDGVID 253
            ID V+D
Sbjct: 190 LIDRVVD 196

[Close]

BLAST of Cucsa.322370 vs. Swiss-Prot
Match: CLPP2_SYNS9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9902) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.4e-52
Identity = 100/187 (53.48%), Postives = 139/187 (74.33%), Query Frame = 1


Query: 67  PQTPDAARRGAET-DAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKDIRLFI 126
           P   + + RG    D    LLRERI+FLG  +DD VADA+++Q+L L+A+D  KDI++++
Sbjct: 10  PTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYV 69

Query: 127 NSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQ 186
           NS GGS+++ +AIYD +Q V  DV TI  G+AAS  + +L GGTKGKRLA+PNARIM+HQ
Sbjct: 70  NSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQ 129

Query: 187 PLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYG 246
           PLGGA G A+D+EIQA+EI+  K+ +  +++E TG P +K+ +D DRD ++SP EAVEYG
Sbjct: 130 PLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLDKISEDTDRDYFLSPAEAVEYG 189

Query: 247 FIDGVID 253
            ID V+D
Sbjct: 190 LIDRVVD 196

[Close]

BLAST of Cucsa.322370 vs. Swiss-Prot
Match: CLPP1_PROMM (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (strain MIT 9313) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.2e-51
Identity = 102/195 (52.31%), Postives = 140/195 (71.79%), Query Frame = 1


Query: 59  PPCSVMTAPQTPDAARRGAET-DAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDS 118
           P  S    P   + + RG    D    LLRERI+FLG  +DD VADA+++Q+L L+A+D 
Sbjct: 19  PVSSPGILPTVVEQSGRGERAFDIYSRLLRERIIFLGTGVDDQVADALVAQMLFLEAEDP 78

Query: 119 TKDIRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMP 178
            KDI+++INS GGS+++ +AIYD +Q V  DV TI  G+AAS  + +L GGTKGKRLA+P
Sbjct: 79  EKDIQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLCGGTKGKRLALP 138

Query: 179 NARIMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMS 238
           NARIM+HQPLGGA G A+D+EIQA+EI+  K+ +  +++E TG P  K+ +D DRD ++S
Sbjct: 139 NARIMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLNKIAEDTDRDHFLS 198

Query: 239 PIEAVEYGFIDGVID 253
           P +AVEYG ID V+D
Sbjct: 199 PAKAVEYGLIDRVVD 213

[Close]

BLAST of Cucsa.322370 vs. Swiss-Prot
Match: CLPP1_SYNPX (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain WH8102) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 7.8e-51
Identity = 98/187 (52.41%), Postives = 138/187 (73.80%), Query Frame = 1


Query: 67  PQTPDAARRGAET-DAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKDIRLFI 126
           P   + + RG    D    LLRERI+FLG  +DD VADA+++Q+L L+A+D  KDI+++I
Sbjct: 27  PTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYI 86

Query: 127 NSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQ 186
           NS GGS+++ +AIYD +Q V  DV TI  G+AAS  + +L GG KGKRLA+PNARIM+HQ
Sbjct: 87  NSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGCKGKRLALPNARIMIHQ 146

Query: 187 PLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYG 246
           PLGGA G A+D+EIQA+EI+  K+ +  ++++ TG P +K+ +D DRD ++SP EAV+YG
Sbjct: 147 PLGGAQGQAVDIEIQAKEILFLKETLNGLMADHTGQPLDKIAEDTDRDYFLSPAEAVQYG 206

Query: 247 FIDGVID 253
            ID V+D
Sbjct: 207 LIDRVVD 213

[Close]

BLAST of Cucsa.322370 vs. TrEMBL
Match: A0A0A0L3S1_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G005040 PE=3 SV=1)

HSP 1 Score: 571.6 bits (1472), Expect = 5.4e-160
Identity = 292/293 (99.66%), Postives = 293/293 (100.00%), Query Frame = 1


Query: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60
           MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP
Sbjct: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  CSVMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKD 120
           CSVMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKD
Sbjct: 61  CSVMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKD 120

Query: 121 IRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNAR 180
           IRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNAR
Sbjct: 121 IRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNAR 180

Query: 181 IMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIE 240
           IMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIE
Sbjct: 181 IMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIE 240

Query: 241 AVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIY 294
           AVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEI+
Sbjct: 241 AVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIF 293

[Close]

BLAST of Cucsa.322370 vs. TrEMBL
Match: A0A061G8D9_THECC (ATP-dependent Clp protease proteolytic subunit OS=Theobroma cacao GN=TCM_016742 PE=3 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 8.2e-108
Identity = 213/293 (72.70%), Postives = 237/293 (80.89%), Query Frame = 1


Query: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60
           M+LLS  S LTP  SSL L   H K S   P  K +    + + V  +  +K +    P 
Sbjct: 1   MDLLSLSSPLTPSLSSLQLKLKH-KTSFTSPNPKPSFLCLTPTPVSSSVKVKTT----PK 60

Query: 61  CSVMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKD 120
           C  ++APQ+P  A RGAETDAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDA+D  KD
Sbjct: 61  CLQLSAPQSPATAMRGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPNKD 120

Query: 121 IRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNAR 180
           IRLFINS GGSLS+TMAIYDVVQLVRADVST+ALGIAASTASIILGGGTKGKRLAMPN R
Sbjct: 121 IRLFINSPGGSLSATMAIYDVVQLVRADVSTVALGIAASTASIILGGGTKGKRLAMPNTR 180

Query: 181 IMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIE 240
           IM+HQPLGGASG A+DVEIQA+EIM NK+NV RIIS FTG  FE+VQKDIDRDRYMSPIE
Sbjct: 181 IMIHQPLGGASGQAIDVEIQAQEIMHNKNNVTRIISGFTGRSFEQVQKDIDRDRYMSPIE 240

Query: 241 AVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIY 294
           AVEYG IDGVID+DSIIPL PVP++VK   NY E+ KDP KFLTPD+PDDEIY
Sbjct: 241 AVEYGIIDGVIDRDSIIPLAPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of Cucsa.322370 vs. TrEMBL
Match: A0A0D2R6I8_GOSRA (ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii GN=B456_004G175000 PE=3 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 9.1e-107
Identity = 211/293 (72.01%), Postives = 235/293 (80.20%), Query Frame = 1


Query: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60
           M LLS  S+LTP  SSL L   H K S  FP      S P+++ +  +  LKP+      
Sbjct: 1   MGLLSLSSSLTPSFSSLHLKPKH-KLSLTFPNPSFVCSAPTSTPLSSSLKLKPTAN---- 60

Query: 61  CSVMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKD 120
              ++APQ+P  A RGAE DAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDA+D TKD
Sbjct: 61  SLKLSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPTKD 120

Query: 121 IRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNAR 180
           IRLFINS GGSLS+TMAIYDVVQLVRADVST+ +GIAASTASIILGGGTKGKR AMPN R
Sbjct: 121 IRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFAMPNTR 180

Query: 181 IMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIE 240
           IM+HQPLGGASG A+DVEIQAREIM NK+NV RIIS  TG PFE+V KDIDRDRYMSPIE
Sbjct: 181 IMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRYMSPIE 240

Query: 241 AVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIY 294
           AVEYG IDGVID+DSIIPL PVP++VK   NY E+ KDP KFLTPD+PDDEIY
Sbjct: 241 AVEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of Cucsa.322370 vs. TrEMBL
Match: M5X1H0_PRUPE (ATP-dependent Clp protease proteolytic subunit OS=Prunus persica GN=PRUPE_ppa009315mg PE=3 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 4.5e-106
Identity = 210/298 (70.47%), Postives = 238/298 (79.87%), Query Frame = 1


Query: 1   MELLSRCSTLTPHASSLGLPNS-HGKPSNFFPKLKSTLSFPSASSVL----KTTALKPSR 60
           M++LS  S +  H S+  L +S   KP + FP   S+  FP+  S+     K T    S+
Sbjct: 1   MDVLSISSPIFLHTSTSKLSHSSRSKPISHFPSSSSS-KFPTIKSLSVQTPKPTFTSKSQ 60

Query: 61  TLPPPCSVMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAK 120
            L     + +APQTP  A RG E DA+GLLLRERIVFLG+SIDDFVADAIISQLLLLDA+
Sbjct: 61  ALDGSLLISSAPQTPATAMRGTEGDALGLLLRERIVFLGSSIDDFVADAIISQLLLLDAQ 120

Query: 121 DSTKDIRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLA 180
           DS KDI+LFINS GGSLS+TMAIYDVVQLVRADV T+ALGIAASTASIILGGGTKGKR A
Sbjct: 121 DSKKDIKLFINSTGGSLSATMAIYDVVQLVRADVCTVALGIAASTASIILGGGTKGKRFA 180

Query: 181 MPNARIMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRY 240
           MPN RIM+HQPLGGASG A+DVEIQARE+M NK+NV RI+S  TG PFE+VQKDIDRDRY
Sbjct: 181 MPNTRIMIHQPLGGASGQAIDVEIQAREVMHNKNNVTRILSNSTGRPFEQVQKDIDRDRY 240

Query: 241 MSPIEAVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIY 294
           MSPIEAVEYG IDGVID DSIIPL+PVPDKVK + +Y E+ KDPMKFLTPDVPDDEIY
Sbjct: 241 MSPIEAVEYGIIDGVIDGDSIIPLVPVPDKVKPRMSYEEISKDPMKFLTPDVPDDEIY 297

[Close]

BLAST of Cucsa.322370 vs. TrEMBL
Match: A0A0B0PZ48_GOSAR (ATP-dependent Clp protease proteolytic subunit OS=Gossypium arboreum GN=F383_15783 PE=3 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 5.0e-105
Identity = 208/293 (70.99%), Postives = 231/293 (78.84%), Query Frame = 1


Query: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60
           M LLS  S+LTP   SL L   H K S  FP      S P++  +  +  LKP+      
Sbjct: 1   MGLLSLSSSLTPSFPSLHLKPKH-KLSLTFPNPSFACSAPTSKPLSSSLKLKPTAN---- 60

Query: 61  CSVMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKD 120
               +APQ+P  A RGAE DAMGLLLRERIVFLGN+IDDF ADAIISQLLLLDA+D TKD
Sbjct: 61  SLKFSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFAADAIISQLLLLDAQDPTKD 120

Query: 121 IRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNAR 180
           IRLFINS GGSLS+TMAIYDVVQLVRADVST+ +GIAASTASIILGGGTKGKR AMPN R
Sbjct: 121 IRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFAMPNTR 180

Query: 181 IMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIE 240
           IM+HQPLGGASG A+DVEIQAREIM NK+NV RIIS  TG PFE+V KDIDRDRYMSPIE
Sbjct: 181 IMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRYMSPIE 240

Query: 241 AVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIY 294
           A+EYG IDGVID+DSIIPL PVP++VK   NY E+ KDP KFLTPD+PDDEIY
Sbjct: 241 ALEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of Cucsa.322370 vs. TAIR10
Match: AT5G45390.1 (AT5G45390.1 CLP protease P4)

HSP 1 Score: 367.1 bits (941), Expect = 1.0e-101
Identity = 201/295 (68.14%), Postives = 228/295 (77.29%), Query Frame = 1


Query: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSA--SSVLKTTALKPSRTLP 60
           M  LS  S+L P   S  L +S    S+ FPK  +    P+   S  L+TT+  P R   
Sbjct: 1   MGTLSLSSSLKPSLVSSRLNSSSSASSSSFPKPNNLYLKPTKLISPPLRTTSPSPLRFAN 60

Query: 61  PPCSVMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDST 120
               +    QT ++A RGAE+D MGLLLRERIVFLG+SIDDFVADAI+SQLLLLDAKD  
Sbjct: 61  ASIEMS---QTQESAIRGAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPK 120

Query: 121 KDIRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPN 180
           KDI+LFINS GGSLS+TMAIYDVVQLVRADVSTIALGIAASTASIILG GTKGKR AMPN
Sbjct: 121 KDIKLFINSPGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPN 180

Query: 181 ARIMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSP 240
            RIM+HQPLGGASG A+DVEIQA+E+M NK+NV  II+  T   FE+V KDIDRDRYMSP
Sbjct: 181 TRIMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSP 240

Query: 241 IEAVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIY 294
           IEAVEYG IDGVID DSIIPL PVPD+VK + NY E+ KDPMKFLTP++PDDEIY
Sbjct: 241 IEAVEYGLIDGVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIPDDEIY 292

[Close]

BLAST of Cucsa.322370 vs. TAIR10
Match: AT1G66670.1 (AT1G66670.1 CLP protease proteolytic subunit 3)

HSP 1 Score: 199.9 bits (507), Expect = 2.2e-51
Identity = 98/203 (48.28%), Postives = 138/203 (67.98%), Query Frame = 1


Query: 62  SVMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKDI 121
           S+ +  Q+P       E D   +LLR+RIVFLG+ +DD  AD +ISQLLLLDA+DS +DI
Sbjct: 67  SIDSVAQSPSRLPSFEELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDI 126

Query: 122 RLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARI 181
            LFINS GGS+++ M IYD ++  +ADVST+ LG+AAS  + +L  G+KGKR  MPN+++
Sbjct: 127 TLFINSPGGSITAGMGIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKV 186

Query: 182 MVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIEA 241
           M+HQPLG A G A ++ I+ RE+M +K  + +I S  TG P  +++ D DRD +++P EA
Sbjct: 187 MIHQPLGTAGGKATEMSIRIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEA 246

Query: 242 VEYGFIDGVIDQDSIIPLMPVPD 265
            EYG ID VID      + P+ D
Sbjct: 247 KEYGLIDAVIDDGKPGLIAPIGD 269

[Close]

BLAST of Cucsa.322370 vs. TAIR10
Match: AT1G02560.1 (AT1G02560.1 nuclear encoded CLP protease 5)

HSP 1 Score: 174.9 bits (442), Expect = 7.5e-44
Identity = 84/167 (50.30%), Postives = 122/167 (73.05%), Query Frame = 1


Query: 85  LLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKDIRLFINSAGGSLSSTMAIYDVVQL 144
           L + RI+  G ++DD +A+ I++QLL LDA D TKDI +++NS GGS+++ MAI+D ++ 
Sbjct: 119 LFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRH 178

Query: 145 VRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQPLGGASGLALDVEIQAREI 204
           +R DVST+ +G+AAS  + +L  GTKGKR ++PN+RIM+HQPLGGA G   D++IQA E+
Sbjct: 179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM 238

Query: 205 MQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYGFIDGVI 252
           + +K N+   ++  TG   EK+ +D DRD +MS  EA EYG IDGVI
Sbjct: 239 LHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 285

[Close]

BLAST of Cucsa.322370 vs. TAIR10
Match: AT1G11750.2 (AT1G11750.2 CLP protease proteolytic subunit 6)

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-40
Identity = 95/253 (37.55%), Postives = 142/253 (56.13%), Query Frame = 1


Query: 11  TPHASSL--GLP-NSHGKPSNFFPKLKSTLSFPSASSVLKTTA------LKPSRTLPPPC 70
           +P+  SL  GL  N  G P     K  S+L  P  + +  +T       ++  +  PP  
Sbjct: 44  SPYGDSLKAGLSSNVSGSPIKIDNKAPSSLPLPILNILKSSTVYFIFGVIEAKKGNPP-- 103

Query: 71  SVMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKDI 130
            VM +  TP     G   D   +L R RI+F+G  I+  VA  +ISQL+ L + D   DI
Sbjct: 104 -VMPSVMTP-----GGPLDLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDI 163

Query: 131 RLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARI 190
            +++N  GGS  S +AIYD +  ++  V T+A G+AAS  +++L GG KG R AMPN R+
Sbjct: 164 LMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRV 223

Query: 191 MVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIEA 250
           M+HQP  G  G   DV  Q  E ++ +  + R+ + FTG P EKVQ+  +RDR++S  EA
Sbjct: 224 MIHQPQTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEA 283

Query: 251 VEYGFIDGVIDQD 255
           +E+G IDG+++ +
Sbjct: 284 LEFGLIDGLLETE 288

[Close]

BLAST of Cucsa.322370 vs. TAIR10
Match: AT5G23140.1 (AT5G23140.1 nuclear-encoded CLP protease P7)

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-37
Identity = 80/201 (39.80%), Postives = 128/201 (63.68%), Query Frame = 1


Query: 67  PQTPDAARRGAET-DAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKDIRLFI 126
           P   + + RG    D    LL+ERI+ +   I+D  +  +++QLL L++++ +K I +++
Sbjct: 34  PMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTSHVVVAQLLYLESENPSKPIHMYL 93

Query: 127 NSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQ 186
           NS GG +++ +AIYD +Q +R+ +STI LG AAS AS++L  G KG+R ++PNA +M+HQ
Sbjct: 94  NSPGGHVTAGLAIYDTMQYIRSPISTICLGQAASMASLLLAAGAKGQRRSLPNATVMIHQ 153

Query: 187 PLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYG 246
           P GG SG A D+ I  ++I++  D +  +  + TG P + V  ++DRD +M+P EA  +G
Sbjct: 154 PSGGYSGQAKDITIHTKQIVRVWDALNELYVKHTGQPLDVVANNMDRDHFMTPEEAKAFG 213

Query: 247 FIDGVIDQDSIIPLMPVPDKV 267
            ID VID+    PL  V D V
Sbjct: 214 IIDEVIDER---PLELVKDAV 231

[Close]

BLAST of Cucsa.322370 vs. NCBI nr
Match: gi|449456777|ref|XP_004146125.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucumis sativus])

HSP 1 Score: 571.6 bits (1472), Expect = 7.8e-160
Identity = 292/293 (99.66%), Postives = 293/293 (100.00%), Query Frame = 1


Query: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60
           MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP
Sbjct: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  CSVMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKD 120
           CSVMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKD
Sbjct: 61  CSVMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKD 120

Query: 121 IRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNAR 180
           IRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNAR
Sbjct: 121 IRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNAR 180

Query: 181 IMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIE 240
           IMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIE
Sbjct: 181 IMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIE 240

Query: 241 AVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIY 294
           AVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEI+
Sbjct: 241 AVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIF 293

[Close]

BLAST of Cucsa.322370 vs. NCBI nr
Match: gi|659095454|ref|XP_008448589.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucumis melo])

HSP 1 Score: 531.9 bits (1369), Expect = 6.8e-148
Identity = 271/293 (92.49%), Postives = 281/293 (95.90%), Query Frame = 1


Query: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60
           MELLSRCSTL P ASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP
Sbjct: 1   MELLSRCSTLIPQASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  CSVMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKD 120
           CSVMTAPQTPDA+RRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDA+DSTKD
Sbjct: 61  CSVMTAPQTPDASRRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKD 120

Query: 121 IRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNAR 180
           IRLFINSAGGSLS+TMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNAR
Sbjct: 121 IRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNAR 180

Query: 181 IMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIE 240
           IMVHQPLGGASG A+DVEIQAREIM NK+NV RIISEFTGHPFEKVQKDIDRDRYMSPIE
Sbjct: 181 IMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPIE 240

Query: 241 AVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIY 294
           AVEYG IDGVID+DSIIPL+PVP++VK   NY E+ KDP KFLTPDVPDDEIY
Sbjct: 241 AVEYGLIDGVIDRDSIIPLVPVPERVKATLNYEEMSKDPRKFLTPDVPDDEIY 293

[Close]

BLAST of Cucsa.322370 vs. NCBI nr
Match: gi|590680694|ref|XP_007040931.1| (ATP-dependent Clp protease proteolytic subunit 4 [Theobroma cacao])

HSP 1 Score: 398.3 bits (1022), Expect = 1.2e-107
Identity = 213/293 (72.70%), Postives = 237/293 (80.89%), Query Frame = 1


Query: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60
           M+LLS  S LTP  SSL L   H K S   P  K +    + + V  +  +K +    P 
Sbjct: 1   MDLLSLSSPLTPSLSSLQLKLKH-KTSFTSPNPKPSFLCLTPTPVSSSVKVKTT----PK 60

Query: 61  CSVMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKD 120
           C  ++APQ+P  A RGAETDAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDA+D  KD
Sbjct: 61  CLQLSAPQSPATAMRGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPNKD 120

Query: 121 IRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNAR 180
           IRLFINS GGSLS+TMAIYDVVQLVRADVST+ALGIAASTASIILGGGTKGKRLAMPN R
Sbjct: 121 IRLFINSPGGSLSATMAIYDVVQLVRADVSTVALGIAASTASIILGGGTKGKRLAMPNTR 180

Query: 181 IMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIE 240
           IM+HQPLGGASG A+DVEIQA+EIM NK+NV RIIS FTG  FE+VQKDIDRDRYMSPIE
Sbjct: 181 IMIHQPLGGASGQAIDVEIQAQEIMHNKNNVTRIISGFTGRSFEQVQKDIDRDRYMSPIE 240

Query: 241 AVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIY 294
           AVEYG IDGVID+DSIIPL PVP++VK   NY E+ KDP KFLTPD+PDDEIY
Sbjct: 241 AVEYGIIDGVIDRDSIIPLAPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of Cucsa.322370 vs. NCBI nr
Match: gi|645238434|ref|XP_008225677.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Prunus mume])

HSP 1 Score: 396.7 bits (1018), Expect = 3.4e-107
Identity = 213/298 (71.48%), Postives = 239/298 (80.20%), Query Frame = 1


Query: 1   MELLSRCSTLTPHASSLGLPNS-HGKPSNFFPKLKSTLSFPSASSVL----KTTALKPSR 60
           M++LS  S +  H  +  L +S   KP + FP   S+  FP+  S+     K T    S+
Sbjct: 1   MDVLSISSPIFLHTPTSKLSHSSRSKPISHFPS--SSSKFPTIKSLSVQTPKPTFTSKSQ 60

Query: 61  TLPPPCSVMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAK 120
            L     + +APQTP  A RGAE DAMGLLLRERIVFLG+SIDDFVADAIISQLLLLDA+
Sbjct: 61  ALDGSLLISSAPQTPATAMRGAEGDAMGLLLRERIVFLGSSIDDFVADAIISQLLLLDAQ 120

Query: 121 DSTKDIRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLA 180
           DS KDI+LFINS GGSLS+TMAIYDVVQLVRADVST+ALGIAASTASIILGGGTKGKR A
Sbjct: 121 DSKKDIKLFINSTGGSLSATMAIYDVVQLVRADVSTVALGIAASTASIILGGGTKGKRFA 180

Query: 181 MPNARIMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRY 240
           MPN RIM+HQPLGGASG A+DVEIQARE+M NK+NV RI+S  TG PFE+VQKDIDRDRY
Sbjct: 181 MPNTRIMIHQPLGGASGQAIDVEIQAREVMHNKNNVTRILSNSTGRPFEQVQKDIDRDRY 240

Query: 241 MSPIEAVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIY 294
           MSPIEAVEYG IDGVID DSIIPL+PVPDKVK + NY E+ KDPMKFLTPDVPDDEIY
Sbjct: 241 MSPIEAVEYGIIDGVIDGDSIIPLVPVPDKVKPRMNYEEISKDPMKFLTPDVPDDEIY 296

[Close]

BLAST of Cucsa.322370 vs. NCBI nr
Match: gi|823151327|ref|XP_012475491.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Gossypium raimondii])

HSP 1 Score: 394.8 bits (1013), Expect = 1.3e-106
Identity = 211/293 (72.01%), Postives = 235/293 (80.20%), Query Frame = 1


Query: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60
           M LLS  S+LTP  SSL L   H K S  FP      S P+++ +  +  LKP+      
Sbjct: 1   MGLLSLSSSLTPSFSSLHLKPKH-KLSLTFPNPSFVCSAPTSTPLSSSLKLKPTAN---- 60

Query: 61  CSVMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKD 120
              ++APQ+P  A RGAE DAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDA+D TKD
Sbjct: 61  SLKLSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPTKD 120

Query: 121 IRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNAR 180
           IRLFINS GGSLS+TMAIYDVVQLVRADVST+ +GIAASTASIILGGGTKGKR AMPN R
Sbjct: 121 IRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFAMPNTR 180

Query: 181 IMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIE 240
           IM+HQPLGGASG A+DVEIQAREIM NK+NV RIIS  TG PFE+V KDIDRDRYMSPIE
Sbjct: 181 IMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRYMSPIE 240

Query: 241 AVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIY 294
           AVEYG IDGVID+DSIIPL PVP++VK   NY E+ KDP KFLTPD+PDDEIY
Sbjct: 241 AVEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

The following BLAST results are available for this feature:

BLAST of Cucsa.322370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLPP4_ARATH	1.8e-100	68.14	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis t...	[more]
CLPP1_SYNSC	1.4e-52	54.01	ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC...	[more]
CLPP2_SYNS9	2.4e-52	53.48	ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC...	[more]
CLPP1_PROMM	1.2e-51	52.31	ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (str...	[more]
CLPP1_SYNPX	7.8e-51	52.41	ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain WH...	[more]

BLAST of Cucsa.322370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3S1_CUCSA	5.4e-160	99.66	ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G00504...	[more]
A0A061G8D9_THECC	8.2e-108	72.70	ATP-dependent Clp protease proteolytic subunit OS=Theobroma cacao GN=TCM_016742 ...	[more]
A0A0D2R6I8_GOSRA	9.1e-107	72.01	ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii GN=B456_00...	[more]
M5X1H0_PRUPE	4.5e-106	70.47	ATP-dependent Clp protease proteolytic subunit OS=Prunus persica GN=PRUPE_ppa009...	[more]
A0A0B0PZ48_GOSAR	5.0e-105	70.99	ATP-dependent Clp protease proteolytic subunit OS=Gossypium arboreum GN=F383_157...	[more]

BLAST of Cucsa.322370 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45390.1	1.0e-101	68.14	CLP protease P4	[more]
AT1G66670.1	2.2e-51	48.28	CLP protease proteolytic subunit 3	[more]
AT1G02560.1	7.5e-44	50.30	nuclear encoded CLP protease 5	[more]
AT1G11750.2	1.3e-40	37.55	CLP protease proteolytic subunit 6	[more]
AT5G23140.1	1.0e-37	39.80	nuclear-encoded CLP protease P7	[more]

BLAST of Cucsa.322370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456777\|ref\|XP_004146125.1\|	7.8e-160	99.66	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucu...	[more]
gi\|659095454\|ref\|XP_008448589.1\|	6.8e-148	92.49	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucu...	[more]
gi\|590680694\|ref\|XP_007040931.1\|	1.2e-107	72.70	ATP-dependent Clp protease proteolytic subunit 4 [Theobroma cacao]	[more]
gi\|645238434\|ref\|XP_008225677.1\|	3.4e-107	71.48	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Prun...	[more]
gi\|823151327\|ref\|XP_012475491.1\|	1.3e-106	72.01	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Goss...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001907	ClpP
IPR023562	ClpP/TepA

Vocabulary: **Molecular Function**
Term	Definition
GO:0004252	serine-type endopeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0006508	proteolysis
biological_process	GO:0048510	regulation of timing of transition from vegetative to reproductive phase
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009840	chloroplastic endopeptidase Clp complex
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004252	serine-type endopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.322370.1	Cucsa.322370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 172..191 score: 1.6E-40coord: 229..248 score: 1.6E-40coord: 120..140 score: 1.6E-40coord: 80..95 score: 1.6E-40coord: 151..168 score: 1.6
IPR001907	ATP-dependent Clp protease proteolytic subunit	HAMAP	MF_00444	ClpP	coord: 65..254 score: 36
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 8..293 score: 6.4E
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 79..253 score: 4.3
None	No IPR available	PANTHER	PTHR10381:SF24	SUBFAMILY NOT NAMED	coord: 8..293 score: 6.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.322370	Cla008866	Watermelon (97103) v1	cgywmB583
Cucsa.322370	Csa3G005040	Cucumber (Chinese Long) v2	cgycuB458
Cucsa.322370	MELO3C013793	Melon (DHL92) v3.5.1	cgymeB532
Cucsa.322370	ClCG10G001000	Watermelon (Charleston Gray)	cgywcgB556
Cucsa.322370	CSPI03G01000	Wild cucumber (PI 183967)	cgycpiB484
Cucsa.322370	CmaCh16G012180	Cucurbita maxima (Rimu)	cgycmaB0887
Cucsa.322370	CmoCh06G006060	Cucurbita moschata (Rifu)	cgycmoB0896
Cucsa.322370	CmoCh16G012620	Cucurbita moschata (Rifu)	cgycmoB0885
Cucsa.322370	Lsi07G011300	Bottle gourd (USVL1VR-Ls)	cgylsiB530
Cucsa.322370	Cp4.1LG14g10100	Cucurbita pepo (Zucchini)	cgycpeB0845
Cucsa.322370	Cp4.1LG08g09080	Cucurbita pepo (Zucchini)	cgycpeB0854
Cucsa.322370	MELO3C013793.2	Melon (DHL92) v3.6.1	cgymedB533
Cucsa.322370	CsaV3_3G001040	Cucumber (Chinese Long) v3	cgycucB499
Cucsa.322370	Cla97C10G185620	Watermelon (97103) v2	cgywmbB562
Cucsa.322370	BhiUN179G3	Wax gourd	cgywgoB655
Cucsa.322370	Carg16286	Silver-seed gourd	carcgyB0759
Cucsa.322370	Carg23564	Silver-seed gourd	carcgyB1164

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.322370	Cucurbita maxima (Rimu)	cgycmaB0899