Carg23564 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23564
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ATP-dependent Clp protease proteolytic subunit
Location	Cucurbita_argyrosperma_scaffold_235 : 51992 .. 56091 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTATTTCTGTATTTCTCACCCAACCAAATCCCCAAACTCATCGTCTATCAGCTTCTTCCTGGTTTCAGAGCTGAAGCAGAGCAGTGCTGCAAATCCATGGAGCTTCTTTCACGCTGTTCTACTCTGATTCCTCATGCCTCCTCTCTCGGCCTTCTCAATTCTCATGGAAAACCGTCAAATTTCTATCCAAAGCTCAAATCCAGTCTCTCTTTTCCTTCGGCTTCATCGGTTCTCAAAACAACCGCTCGTAAGCCCTCGAGAACCCTAGCTCCGTCCTGTTCTGTTCATATGACGGGTCCACAAACGCCGGATGCCGCTCAGAGAGGCGCCGAGACTGACGCCATGGGACTGCTTCTCAGGGAGAGGATTGTCTTCTTGGGGAACAGCATCGATGATTTTGTGGCTGATGCTATTATCAGTCAGCTTTTGCTCTTGGATGCGCAGGACTCTACTAAAGATATCAGACTTTTCATTAATTCCTCTGGCGGCTCTCTCAGGTATTCACGAGATGATTTTTTGTGCATAATGTAGTTGGTGAAGTATGGAATATGAAATTCGGGCTCATTTGTGTTCTTTCCAAACGATTTAGGTAATTTGATTTCTAGGAATATGCGATTTATGCCTAATTTCCATGCGGAAGGTGCTCATATGCTTTCCTTACTGCGCTGAATGCAAGAGTTAGCCTACATTACTTGATCTCTGCCTCTCGCAATTTCTATATTGTTTTATTCATCTGCATCACAAGCAGTTAGCCTACGAATGGGATCATTCATTCCAGTGATGAGTCGGGTCACTGAAAATTTAGGACTCGTTGTAGATCAATGAAATTGGAATGGAAAATTATTTTTAATATATAGCGATACTCATGTTATGCACCTGCTATCAATAGAAATGCTTATGAACTATGAAAGTTATATAAACATCCAACATTGAAATTGTTTGTACATAAAAAACTTTAAATTAGAAAGAACCGTGCAAGAGTGTTAGTCTACCTTGTTACGTGGAACTTTGCTGGTCCTCTTATTTCTTTTGGTGGCTTGAGAATTTGAAATGTAAGGACTAGAAACACCGCCTTCCTCTCAAAGTGGATGCTTGCGTGAAGAGAGTCCCCTTAGAAGAGGCTTAATCGAGTAAATATGCGATTGGCAATCTTTGTGATATTTAGGTTCTAGAGTTGACATGGATAAAATATGAGATTTCTTTGATCAGTGTCCTTTTAAAGAATGGCAATGGTCGGAGGACATTAATGAAATCTGCCAATCTCCAGCTGAATAGTAAAGAAGGCTGGTTAGATAAACCCTTTTTTCTTTGGTTTGGAAGGAGAACTCTCAGTTCTTCCTTTGGGATATGACTTACAAGAGCCTAAACACTTGTGATTGGATTCAAAAGATGATCCCTTCCATGGCTTTATCTCCTTCGCTTACCCTGCATATCTAATGAAGAAATCTTGGACCATCTTTGTATTCAATTAGCAACATGTTGCACAAAAGGTTTACATGTGATTCCGTGACGACTCCTGTTTTGGATAGGAACCAATTTCATGGACTAAATGAAATTATACAAATAGTTAAACCCATCCGAAGAGATTGCAACAGATTTCTGGAGTTGGATGAGAGAATTTAAGCGGTAGCTATTAAAAGGAAGCATATTTTTACACGAATAAAGAGCTATGAAACAATAGGCTTCTAGGACTTTAAGTGGAGAGTTTCTTTGTCTAAAAAATCCTCGAGTTCAATTCATTCCAAATCTTCCAAATAACCGGCCTCACAATGAATGACCAAATGATATTCCCTGTCAACTTGATGGATGATCCATCAGATGCAAATTTAGCCAATCAAGAACCCCATTTTATGAGGACCAATTTCCTAAATCAGTACTCCTTTGAAATAGGCGCTAACACCCCTCCTAAGTGAGTAAACATGTTGGCCAAATCAAAATTCTTTCCAACAATTTAACGTACCGGTTTCTTGTTCTTCTATGGCATTCTCAGTGGCAGATGATAAAGCATAGAGGTGGTGGAAGTTGAAGATACCAGAGGTTCCCTAACTACTAAAGTATTGTAGTAATGCATCTATTGCCGTCTCTCCCTTTTCCTTTGTGGCATCTTTTGAACGACGTGCTAGGGTCTTGATAGAGGTTAAATGTATTAACACACTGAATTCAGAATATACGGTTTCAAAACATCTACATATTATTATTCTATTTGTATCAAGTTTTACTTTGCTCTGGATAACACTTGGTTTATTCATTTAATGTGTTTATATCTAGAGACAAGTGTATTCATCTACTCGACTTTTCTACATGAATGGGACGGGCCTTTATGTACATTAGGAAATCTTCTAGAGTAATTTAACTTAGAATTCTGTGGCTTATGAATGACCTTTTCATGATCCTCTCTTTGCATCTTTGATGTGCAACTACTTACTAATGGTAAATCTATCATTCACCACCAAATCAGCTTTTTTCAAAATGTATATTGATATGTAACTACATAAGGATGCTCGTGGGAGGTGTAAGCAGAAGAAATTATGTACTCTACCTAGCCCATTTGTCAGAAAAGGTTATGTTTAATAAGTTCCACATCTATTAATCCTCATTTCGGTTAACGAACACACCTTTCTAACTTTGTCATAATCCAAACCCAGTCTCCCAGTTGTGTACCGAACAGATTCCTTTTCAGCCTAACGTCCCCCAAGTTCGGTCTTCTTTCAAGCAATCAAACCAGTTATCTTCCTAGATTGAGATCCTAAGCCCATTCCCTATCGTATAAAGCAAACCATTTCGGACAAACCTGTACATCTAGCAAGAACAGGCCAGGAGCAGAAGGAAGACTAGGATACGTGGTTTCATTTGTTTTGCGAGTTCCAGGACTTCAAATTTTAGAAGTAGGAGTGTTATATAATCATACTTATGAGTATAAAAATTCTTGTCATTATTTATTTGAAGCTGGAAATATCGATTATTAGGCGTTTTTACTATATATGTTTGTTTTTCCCTCTTCTGTCTTGGAAATTTAGGTTTAGGAGGACGTTCAACTTTCGATGAGTGGCACCTGATCTCATCCATTTTTGCATCATATTCATTATCATTCTGAAAGTCGATAGTCTTCTTAGTTAATATTTTCGTGTTTGGTTGTATTACATTACCCTTGCCTGATTTCCTTCTATTAATGTTGTTTTCATTAGTGCAACCATGGCTATCTACGATGTCGTACAGCTCGTGAGGGCCGATGTCTCTACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGCGGTGGCACTAAAGGAAAGCGTCTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGGCAAGCAATAGACGTGGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATTACAAGAATCATCTCCGAGTTCACTGGCCATCCATTCGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCCCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAGGACAGCATTATACCTCTCGTGCCAGTGCCAGAACGAGTGAAGGCAAGTTTAAATTATATAGAAATTAGCAAAGATCCCAAAAAATTCTTGTCACCAGATGTCCCCGACGACGAGATATACTAGTTTCAAGCGTTTCAATGTACCGTTTTCTAGGCTTTCGATTTATATGATTCACTTGTAGAATCCTATGTGTGAGCAAAGTCATGGTAAGCGGAAACCAGAAATATGCTGGAACTTGCTGAGCTCATCACCGTCGTCTCTACTTACCAGAAGTTAAAAAGGTATTGGGAATTTGGACTCTTTTTCTATCTATGACATTATCAAATGAGCATTCTTGAGAAAGGAAAACTTAGCATTGAATCATATTTTGTATTGGCAGTGTATATTTGTTGATTGATTCATGAATATCGTCATTTTTTTTAATCGTCATTTGGAGATACGGTGATTTAATCCTCTTATCTCTTAATCGAAGATATTTGTCTCAACCAATTTAATTATGTTCAGGTTCTTGACATCTTGATCGAAGAAATATATCTTAATTAATTTAATTTTG

mRNA sequence

TGTATTTCTGTATTTCTCACCCAACCAAATCCCCAAACTCATCGTCTATCAGCTTCTTCCTGGTTTCAGAGCTGAAGCAGAGCAGTGCTGCAAATCCATGGAGCTTCTTTCACGCTGTTCTACTCTGATTCCTCATGCCTCCTCTCTCGGCCTTCTCAATTCTCATGGAAAACCGTCAAATTTCTATCCAAAGCTCAAATCCAGTCTCTCTTTTCCTTCGGCTTCATCGGTTCTCAAAACAACCGCTCGTAAGCCCTCGAGAACCCTAGCTCCGTCCTGTTCTGTTCATATGACGGGTCCACAAACGCCGGATGCCGCTCAGAGAGGCGCCGAGACTGACGCCATGGGACTGCTTCTCAGGGAGAGGATTGTCTTCTTGGGGAACAGCATCGATGATTTTGTGGCTGATGCTATTATCAGTCAGCTTTTGCTCTTGGATGCGCAGGACTCTACTAAAGATATCAGACTTTTCATTAATTCCTCTGGCGGCTCTCTCAGTGCAACCATGGCTATCTACGATGTCGTACAGCTCGTGAGGGCCGATGTCTCTACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGCGGTGGCACTAAAGGAAAGCGTCTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGGCAAGCAATAGACGTGGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATTACAAGAATCATCTCCGAGTTCACTGGCCATCCATTCGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCCCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAGGACAGCATTATACCTCTCGTGCCAGTGCCAGAACGAGTGAAGGCAAGTTTAAATTATATAGAAATTAGCAAAGATCCCAAAAAATTCTTGTCACCAGATGTCCCCGACGACGAGATATACTAGTTTCAAGCGTTTCAATGTACCGTTTTCTAGGCTTTCGATTTATATGATTCACTTGTAGAATCCTATGTGTGAGCAAAGTCATGGTAAGCGGAAACCAGAAATATGCTGGAACTTGCTGAGCTCATCACCGTCGTCTCTACTTACCAGAAGTTAAAAAGGTATTGGGAATTTGGACTCTTTTTCTATCTATGACATTATCAAATGAGCATTCTTGAGAAAGGAAAACTTAGCATTGAATCATATTTTGTATTGGCAGTGTATATTTGTTGATTGATTCATGAATATCGTCATTTTTTTTAATCGTCATTTGGAGATACGGTGATTTAATCCTCTTATCTCTTAATCGAAGATATTTGTCTCAACCAATTTAATTATGTTCAGGTTCTTGACATCTTGATCGAAGAAATATATCTTAATTAATTTAATTTTG

Coding sequence (CDS)

ATGGAGCTTCTTTCACGCTGTTCTACTCTGATTCCTCATGCCTCCTCTCTCGGCCTTCTCAATTCTCATGGAAAACCGTCAAATTTCTATCCAAAGCTCAAATCCAGTCTCTCTTTTCCTTCGGCTTCATCGGTTCTCAAAACAACCGCTCGTAAGCCCTCGAGAACCCTAGCTCCGTCCTGTTCTGTTCATATGACGGGTCCACAAACGCCGGATGCCGCTCAGAGAGGCGCCGAGACTGACGCCATGGGACTGCTTCTCAGGGAGAGGATTGTCTTCTTGGGGAACAGCATCGATGATTTTGTGGCTGATGCTATTATCAGTCAGCTTTTGCTCTTGGATGCGCAGGACTCTACTAAAGATATCAGACTTTTCATTAATTCCTCTGGCGGCTCTCTCAGTGCAACCATGGCTATCTACGATGTCGTACAGCTCGTGAGGGCCGATGTCTCTACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGCGGTGGCACTAAAGGAAAGCGTCTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGGCAAGCAATAGACGTGGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATTACAAGAATCATCTCCGAGTTCACTGGCCATCCATTCGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCCCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAGGACAGCATTATACCTCTCGTGCCAGTGCCAGAACGAGTGAAGGCAAGTTTAAATTATATAGAAATTAGCAAAGATCCCAAAAAATTCTTGTCACCAGATGTCCCCGACGACGAGATATACTAG

Protein sequence

MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSSLSFPSASSVLKTTARKPSRTLAPSCSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFLSPDVPDDEIY

Homology

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BLAST of Carg23564 vs. NCBI nr
Match: XP_022923515.1 (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 558.5 bits (1438), Expect = 1.3e-155
Identity = 293/294 (99.66%), Postives = 293/294 (99.66%), Query Frame = 0


Query: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSSLSFPSASSVLKTTARKPSRTLAPS 60
           MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSSLSFPSASSVLKTTARKPSRTLA S
Sbjct: 48  MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSSLSFPSASSVLKTTARKPSRTLATS 107

Query: 61  CSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
           CSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK
Sbjct: 108 CSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 167

Query: 121 DIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA
Sbjct: 168 DIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 227

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI
Sbjct: 228 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI 287

Query: 241 EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFLSPDVPDDEIY 295
           EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFLSPDVPDDEIY
Sbjct: 288 EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFLSPDVPDDEIY 341

[Close]

BLAST of Carg23564 vs. NCBI nr
Match: XP_023553095.1 (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 558.5 bits (1438), Expect = 1.3e-155
Identity = 292/294 (99.32%), Postives = 294/294 (100.00%), Query Frame = 0


Query: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSSLSFPSASSVLKTTARKPSRTLAPS 60
           MELLSRCSTLIPHASSLGLLNSHGKPSNF+PKLKSS+SFPSASSVLKTTARKPSRTLAPS
Sbjct: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFHPKLKSSVSFPSASSVLKTTARKPSRTLAPS 60

Query: 61  CSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
           CSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK
Sbjct: 61  CSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA
Sbjct: 121 DIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFLSPDVPDDEIY 295
           EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFLSPDVPDDEIY
Sbjct: 241 EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFLSPDVPDDEIY 294

[Close]

BLAST of Carg23564 vs. NCBI nr
Match: XP_022965370.1 (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 551.2 bits (1419), Expect = 2.1e-153
Identity = 289/294 (98.30%), Postives = 290/294 (98.64%), Query Frame = 0


Query: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSSLSFPSASSVLKTTARKPSRTLAPS 60
           MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKS LSFPSASSVLKTTARKPSRTLA S
Sbjct: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSGLSFPSASSVLKTTARKPSRTLATS 60

Query: 61  CSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
            SVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK
Sbjct: 61  SSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINSSGGSLSATMAIYDV+QLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA
Sbjct: 121 DIRLFINSSGGSLSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFLSPDVPDDEIY 295
           EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKF SPDVPDDEIY
Sbjct: 241 EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFFSPDVPDDEIY 294

[Close]

BLAST of Carg23564 vs. NCBI nr
Match: XP_008448589.1 (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucumis melo])

HSP 1 Score: 523.5 bits (1347), Expect = 4.7e-145
Identity = 275/294 (93.54%), Postives = 286/294 (97.28%), Query Frame = 0


Query: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSSLSFPSASSVLKTTARKPSRTLAPS 60
           MELLSRCSTLIP ASSLGL NSHGKPSNF+PKLKS+LSFPSASSVLKTTA KPSRTL P 
Sbjct: 1   MELLSRCSTLIPQASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  CSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
           CSV MT PQTPDA++RGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK
Sbjct: 61  CSV-MTAPQTPDASRRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINS+GGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA
Sbjct: 121 DIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASGQAIDVEIQAREIMHNKNN+TRIISEFTGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFLSPDVPDDEIY 295
           EAVEYGLIDGVID+DSIIPLVPVPERVKA+LNY E+SKDP+KFL+PDVPDDEIY
Sbjct: 241 EAVEYGLIDGVIDRDSIIPLVPVPERVKATLNYEEMSKDPRKFLTPDVPDDEIY 293

[Close]

BLAST of Carg23564 vs. NCBI nr
Match: XP_022145352.1 (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Momordica charantia])

HSP 1 Score: 521.2 bits (1341), Expect = 2.3e-144
Identity = 274/294 (93.20%), Postives = 280/294 (95.24%), Query Frame = 0


Query: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSSLSFPSASSVLKTTARKPSRTLAPS 60
           MELLSRCSTLIPHASSL L NSH KPSNFYPKLKSSLSFPSA SVLK TA KPSRTLA  
Sbjct: 1   MELLSRCSTLIPHASSLSLPNSHPKPSNFYPKLKSSLSFPSACSVLKATALKPSRTLASP 60

Query: 61  CSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
           CSV MT PQTPD A+RGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK
Sbjct: 61  CSVLMTAPQTPDVARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINS GGSLSATMAIYDVVQLVRADVSTI LGIAASTASIILGGGTKGKRLAMPNA
Sbjct: 121 DIRLFINSPGGSLSATMAIYDVVQLVRADVSTIGLGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASGQAIDVEIQAREIMHNKNN+TRIISEFTGHPF+KVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFDKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFLSPDVPDDEIY 295
           EAVEYGLIDGVIDKDSIIPL+PVPERVKASLNY EISKDP+KFL+PDVPDDEIY
Sbjct: 241 EAVEYGLIDGVIDKDSIIPLMPVPERVKASLNYEEISKDPRKFLTPDVPDDEIY 294

[Close]

BLAST of Carg23564 vs. TAIR10
Match: AT5G45390.1 (CLP protease P4)

HSP 1 Score: 360.1 bits (923), Expect = 1.3e-99
Identity = 190/242 (78.51%), Postives = 211/242 (87.19%), Query Frame = 0


Query: 53  PSRTLAPSCSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLL 112
           PS     + S+ M+  QT ++A RGAE+D MGLLLRERIVFLG+SIDDFVADAI+SQLLL
Sbjct: 53  PSPLRFANASIEMS--QTQESAIRGAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLL 112

Query: 113 LDAQDSTKDIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKG 172
           LDA+D  KDI+LFINS GGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILG GTKG
Sbjct: 113 LDAKDPKKDIKLFINSPGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKG 172

Query: 173 KRLAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDID 232
           KR AMPN RIM+HQPLGGASGQAIDVEIQA+E+MHNKNN+T II+  T   FE+V KDID
Sbjct: 173 KRFAMPNTRIMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDID 232

Query: 233 RDRYMSPIEAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFLSPDVPDDE 292
           RDRYMSPIEAVEYGLIDGVID DSIIPL PVP+RVK  +NY EISKDP KFL+P++PDDE
Sbjct: 233 RDRYMSPIEAVEYGLIDGVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIPDDE 292

Query: 293 IY 295
           IY
Sbjct: 293 IY 292

[Close]

BLAST of Carg23564 vs. TAIR10
Match: AT1G66670.1 (CLP protease proteolytic subunit 3)

HSP 1 Score: 198.0 bits (502), Expect = 8.3e-51
Identity = 106/224 (47.32%), Postives = 152/224 (67.86%), Query Frame = 0


Query: 34  KSSLSFPSASSVLKTTARKPSRTLAPSCSVHM----TGPQTPDAAQRGAETDAMGLLLRE 93
           K+S  F   SS+  + ++ P +TL+ +  V      +  Q+P       E D   +LLR+
Sbjct: 36  KTSKPFCVRSSM--SLSKPPRQTLSSNWDVSSFSIDSVAQSPSRLPSFEELDTTNMLLRQ 95

Query: 94  RIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGSLSATMAIYDVVQLVRAD 153
           RIVFLG+ +DD  AD +ISQLLLLDA+DS +DI LFINS GGS++A M IYD ++  +AD
Sbjct: 96  RIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIYDAMKQCKAD 155

Query: 154 VSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNK 213
           VST+ LG+AAS  + +L  G+KGKR  MPN+++M+HQPLG A G+A ++ I+ RE+M++K
Sbjct: 156 VSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMSIRIREMMYHK 215

Query: 214 NNITRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVID 254
             + +I S  TG P  +++ D DRD +++P EA EYGLID VID
Sbjct: 216 IKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVID 257

[Close]

BLAST of Carg23564 vs. TAIR10
Match: AT1G02560.1 (nuclear encoded CLP protease 5)

HSP 1 Score: 179.5 bits (454), Expect = 3.0e-45
Identity = 87/167 (52.10%), Postives = 124/167 (74.25%), Query Frame = 0


Query: 86  LLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGSLSATMAIYDVVQL 145
           L + RI+  G ++DD +A+ I++QLL LDA D TKDI +++NS GGS++A MAI+D ++ 
Sbjct: 119 LFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRH 178

Query: 146 VRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQPLGGASGQAIDVEIQAREI 205
           +R DVST+ +G+AAS  + +L  GTKGKR ++PN+RIM+HQPLGGA G   D++IQA E+
Sbjct: 179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM 238

Query: 206 MHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVI 253
           +H+K N+   ++  TG   EK+ +D DRD +MS  EA EYGLIDGVI
Sbjct: 239 LHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 285

[Close]

BLAST of Carg23564 vs. TAIR10
Match: AT1G11750.2 (CLP protease proteolytic subunit 6)

HSP 1 Score: 156.4 bits (394), Expect = 2.8e-38
Identity = 89/245 (36.33%), Postives = 133/245 (54.29%), Query Frame = 0


Query: 27  SNFYPKLKSSLSFPSASSVLKTTARKPSRTLAPSCSVHMTG----------------PQT 86
           S +   LK+ LS   + S +K   + PS    P  ++  +                 P  
Sbjct: 44  SPYGDSLKAGLSSNVSGSPIKIDNKAPSSLPLPILNILKSSTVYFIFGVIEAKKGNPPVM 103

Query: 87  PDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFINSSG 146
           P     G   D   +L R RI+F+G  I+  VA  +ISQL+ L + D   DI +++N  G
Sbjct: 104 PSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDILMYLNCPG 163

Query: 147 GSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQPLGG 206
           GS  + +AIYD +  ++  V T+A G+AAS  +++L GG KG R AMPN R+M+HQP  G
Sbjct: 164 GSTYSVLAIYDCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVMIHQPQTG 223

Query: 207 ASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDG 256
             G   DV  Q  E +  +  I R+ + FTG P EKVQ+  +RDR++S  EA+E+GLIDG
Sbjct: 224 CGGHVEDVRRQVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEALEFGLIDG 283

[Close]

BLAST of Carg23564 vs. TAIR10
Match: AT5G23140.1 (nuclear-encoded CLP protease P7)

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-37
Identity = 80/215 (37.21%), Postives = 135/215 (62.79%), Query Frame = 0


Query: 41  SASSVLKTTARKPSRTLAPSCSVHMTGPQTPDAAQRGAET-DAMGLLLRERIVFLGNSID 100
           S + +L +T    + ++A     +   P   + + RG    D    LL+ERI+ +   I+
Sbjct: 7   SGAKMLSSTPSSMATSIATGRRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPIN 66

Query: 101 DFVADAIISQLLLLDAQDSTKDIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAA 160
           D  +  +++QLL L++++ +K I +++NS GG ++A +AIYD +Q +R+ +STI LG AA
Sbjct: 67  DDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPISTICLGQAA 126

Query: 161 STASIILGGGTKGKRLAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEF 220
           S AS++L  G KG+R ++PNA +M+HQP GG SGQA D+ I  ++I+   + +  +  + 
Sbjct: 127 SMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAKDITIHTKQIVRVWDALNELYVKH 186

Query: 221 TGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVIDK 255
           TG P + V  ++DRD +M+P EA  +G+ID VID+
Sbjct: 187 TGQPLDVVANNMDRDHFMTPEEAKAFGIIDEVIDE 221

[Close]

BLAST of Carg23564 vs. Swiss-Prot
Match: sp|Q94B60|CLPP4_ARATH (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPP4 PE=1 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 2.3e-98
Identity = 190/242 (78.51%), Postives = 211/242 (87.19%), Query Frame = 0


Query: 53  PSRTLAPSCSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLL 112
           PS     + S+ M+  QT ++A RGAE+D MGLLLRERIVFLG+SIDDFVADAI+SQLLL
Sbjct: 53  PSPLRFANASIEMS--QTQESAIRGAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLL 112

Query: 113 LDAQDSTKDIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKG 172
           LDA+D  KDI+LFINS GGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILG GTKG
Sbjct: 113 LDAKDPKKDIKLFINSPGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKG 172

Query: 173 KRLAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDID 232
           KR AMPN RIM+HQPLGGASGQAIDVEIQA+E+MHNKNN+T II+  T   FE+V KDID
Sbjct: 173 KRFAMPNTRIMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDID 232

Query: 233 RDRYMSPIEAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFLSPDVPDDE 292
           RDRYMSPIEAVEYGLIDGVID DSIIPL PVP+RVK  +NY EISKDP KFL+P++PDDE
Sbjct: 233 RDRYMSPIEAVEYGLIDGVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIPDDE 292

Query: 293 IY 295
           IY
Sbjct: 293 IY 292

[Close]

BLAST of Carg23564 vs. Swiss-Prot
Match: sp|Q3ANI8|CLPP1_SYNSC (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9605) OX=110662 GN=clpP1 PE=3 SV=2)

HSP 1 Score: 212.6 bits (540), Expect = 5.8e-54
Identity = 104/187 (55.61%), Postives = 141/187 (75.40%), Query Frame = 0


Query: 68  PQTPDAAQRGAET-DAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFI 127
           P   + + RG    D    LLRERI+FLG  +DD VADA+++Q+L L+A+D  KDI+++I
Sbjct: 10  PTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYI 69

Query: 128 NSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQ 187
           NS GGS++A +AIYD +Q V  DV TI  G+AAS  + +L GGTKGKRLA+PNARIM+HQ
Sbjct: 70  NSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQ 129

Query: 188 PLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYG 247
           PLGGA GQA+D+EIQA+EI++ K  +  +++E TG P +K+ +D DRD ++SP EAVEYG
Sbjct: 130 PLGGAQGQAVDIEIQAKEILYLKETLNGLMAEHTGQPLDKISEDTDRDYFLSPAEAVEYG 189

Query: 248 LIDGVID 254
           LID V+D
Sbjct: 190 LIDRVVD 196

[Close]

BLAST of Carg23564 vs. Swiss-Prot
Match: sp|Q3B0U1|CLPP2_SYNS9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpP2 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.3e-53
Identity = 103/187 (55.08%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 68  PQTPDAAQRGAET-DAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFI 127
           P   + + RG    D    LLRERI+FLG  +DD VADA+++Q+L L+A+D  KDI++++
Sbjct: 10  PTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYV 69

Query: 128 NSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQ 187
           NS GGS++A +AIYD +Q V  DV TI  G+AAS  + +L GGTKGKRLA+PNARIM+HQ
Sbjct: 70  NSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQ 129

Query: 188 PLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYG 247
           PLGGA GQA+D+EIQA+EI+  K  +  +++E TG P +K+ +D DRD ++SP EAVEYG
Sbjct: 130 PLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLDKISEDTDRDYFLSPAEAVEYG 189

Query: 248 LIDGVID 254
           LID V+D
Sbjct: 190 LIDRVVD 196

[Close]

BLAST of Carg23564 vs. Swiss-Prot
Match: sp|Q7V992|CLPP1_PROMM (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (strain MIT 9313) OX=74547 GN=clpP1 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 8.4e-53
Identity = 103/187 (55.08%), Postives = 139/187 (74.33%), Query Frame = 0


Query: 68  PQTPDAAQRGAET-DAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFI 127
           P   + + RG    D    LLRERI+FLG  +DD VADA+++Q+L L+A+D  KDI+++I
Sbjct: 27  PTVVEQSGRGERAFDIYSRLLRERIIFLGTGVDDQVADALVAQMLFLEAEDPEKDIQIYI 86

Query: 128 NSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQ 187
           NS GGS++A +AIYD +Q V  DV TI  G+AAS  + +L GGTKGKRLA+PNARIM+HQ
Sbjct: 87  NSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLCGGTKGKRLALPNARIMIHQ 146

Query: 188 PLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYG 247
           PLGGA GQA+D+EIQA+EI+  K  +  +++E TG P  K+ +D DRD ++SP +AVEYG
Sbjct: 147 PLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLNKIAEDTDRDHFLSPAKAVEYG 206

Query: 248 LIDGVID 254
           LID V+D
Sbjct: 207 LIDRVVD 213

[Close]

BLAST of Carg23564 vs. Swiss-Prot
Match: sp|O34125|CLPP2_SYNE7 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN=clpP2 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.4e-52
Identity = 103/191 (53.93%), Postives = 143/191 (74.87%), Query Frame = 0


Query: 68  PQTPDAAQRGAET-DAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFI 127
           P   + + RG    D    LLRERIVFLG  +DD VAD+I++QLL L+A+D  KDI+L+I
Sbjct: 39  PTVVEQSGRGERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYI 98

Query: 128 NSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQ 187
           NS GGS++A MAIYD +Q V  DV+TI  G+AAS  + +L GG +GKR+A+P+ARIM+HQ
Sbjct: 99  NSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQ 158

Query: 188 PLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYG 247
           PLGGA GQA+D+EIQAREI+++K+ +  ++++ TG P EK++ D DRD +MSP EA  YG
Sbjct: 159 PLGGAQGQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYG 218

Query: 248 LIDGVIDKDSI 258
           LID V+ + ++
Sbjct: 219 LIDQVLTRPTM 229

[Close]

BLAST of Carg23564 vs. TrEMBL
Match: tr|A0A1S3BJF4|A0A1S3BJF4_CUCME (ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103490719 PE=3 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 3.1e-145
Identity = 275/294 (93.54%), Postives = 286/294 (97.28%), Query Frame = 0


Query: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSSLSFPSASSVLKTTARKPSRTLAPS 60
           MELLSRCSTLIP ASSLGL NSHGKPSNF+PKLKS+LSFPSASSVLKTTA KPSRTL P 
Sbjct: 1   MELLSRCSTLIPQASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  CSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
           CSV MT PQTPDA++RGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK
Sbjct: 61  CSV-MTAPQTPDASRRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINS+GGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA
Sbjct: 121 DIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASGQAIDVEIQAREIMHNKNN+TRIISEFTGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFLSPDVPDDEIY 295
           EAVEYGLIDGVID+DSIIPLVPVPERVKA+LNY E+SKDP+KFL+PDVPDDEIY
Sbjct: 241 EAVEYGLIDGVIDRDSIIPLVPVPERVKATLNYEEMSKDPRKFLTPDVPDDEIY 293

[Close]

BLAST of Carg23564 vs. TrEMBL
Match: tr|A0A0A0L3S1|A0A0A0L3S1_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus OX=3659 GN=Csa_3G005040 PE=3 SV=1)

HSP 1 Score: 500.4 bits (1287), Expect = 2.8e-138
Identity = 261/294 (88.78%), Postives = 277/294 (94.22%), Query Frame = 0


Query: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSSLSFPSASSVLKTTARKPSRTLAPS 60
           MELLSRCSTL PHASSLGL NSHGKPSNF+PKLKS+LSFPSASSVLKTTA KPSRTL P 
Sbjct: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  CSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
           CSV MT PQTPDAA+RGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDA+DSTK
Sbjct: 61  CSV-MTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINS+GGSLS+TMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA
Sbjct: 121 DIRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASG A+DVEIQAREIM NK+N+ RIISEFTGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFLSPDVPDDEIY 295
           EAVEYG IDGVID+DSIIPL+PVP++VK   NY E+ KDP KFL+PDVPDDEI+
Sbjct: 241 EAVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIF 293

[Close]

BLAST of Carg23564 vs. TrEMBL
Match: tr|A0A0D2R6I8|A0A0D2R6I8_GOSRA (ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii OX=29730 GN=B456_004G175000 PE=3 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 5.6e-110
Identity = 225/298 (75.50%), Postives = 244/298 (81.88%), Query Frame = 0


Query: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSSLSFPSASSVLKTTARKP---SRTL 60
           M LLS  S+L P  SSL L           PK K SL+FP+ S V       P   S  L
Sbjct: 1   MGLLSLSSSLTPSFSSLHL----------KPKHKLSLTFPNPSFVCSAPTSTPLSSSLKL 60

Query: 61  APSC-SVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQ 120
            P+  S+ ++ PQ+P  A RGAE DAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDAQ
Sbjct: 61  KPTANSLKLSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ 120

Query: 121 DSTKDIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLA 180
           D TKDIRLFINS GGSLSATMAIYDVVQLVRADVST+ +GIAASTASIILGGGTKGKR A
Sbjct: 121 DPTKDIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFA 180

Query: 181 MPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRY 240
           MPN RIM+HQPLGGASGQAIDVEIQAREIMHNKNN+TRIIS  TG PFE+V KDIDRDRY
Sbjct: 181 MPNTRIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRY 240

Query: 241 MSPIEAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFLSPDVPDDEIY 295
           MSPIEAVEYG+IDGVID+DSIIPL PVPERVKASLNY EISKDP+KFL+PD+PDDEIY
Sbjct: 241 MSPIEAVEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of Carg23564 vs. TrEMBL
Match: tr|A0A1U8IV12|A0A1U8IV12_GOSHI (ATP-dependent Clp protease proteolytic subunit OS=Gossypium hirsutum OX=3635 GN=LOC107900718 PE=3 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 2.1e-109
Identity = 224/298 (75.17%), Postives = 243/298 (81.54%), Query Frame = 0


Query: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSSLSFPSASSVLKTTARKP---SRTL 60
           M LLS  S+L P   SL L           PK K SL+FP+ S V       P   S  L
Sbjct: 1   MGLLSLSSSLTPSFPSLHL----------KPKHKLSLTFPNPSFVCSAPTSTPLSSSLKL 60

Query: 61  APSC-SVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQ 120
            P+  S+ ++ PQ+P  A RGAE DAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDAQ
Sbjct: 61  KPTANSLKLSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ 120

Query: 121 DSTKDIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLA 180
           D TKDIRLFINS GGSLSATMAIYDVVQLVRADVST+ +GIAASTASIILGGGTKGKR A
Sbjct: 121 DPTKDIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFA 180

Query: 181 MPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRY 240
           MPN RIM+HQPLGGASGQAIDVEIQAREIMHNKNN+TRIIS  TG PFE+V KDIDRDRY
Sbjct: 181 MPNTRIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRY 240

Query: 241 MSPIEAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFLSPDVPDDEIY 295
           MSPIEAVEYG+IDGVID+DSIIPL PVPERVKASLNY EISKDP+KFL+PD+PDDEIY
Sbjct: 241 MSPIEAVEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of Carg23564 vs. TrEMBL
Match: tr|A0A2P5RSP6|A0A2P5RSP6_GOSBA (ATP-dependent Clp protease proteolytic subunit OS=Gossypium barbadense OX=3634 GN=GOBAR_DD13246 PE=3 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 2.1e-109
Identity = 224/298 (75.17%), Postives = 243/298 (81.54%), Query Frame = 0


Query: 1   MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSSLSFPSASSVLKTTARKP---SRTL 60
           M LLS  S+L P   SL L           PK K SL+FP+ S V       P   S  L
Sbjct: 1   MGLLSLSSSLTPSFPSLHL----------KPKHKLSLTFPNPSFVCSAPTSTPLSSSLKL 60

Query: 61  APSC-SVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQ 120
            P+  S+ ++ PQ+P  A RGAE DAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDAQ
Sbjct: 61  KPTANSLKLSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ 120

Query: 121 DSTKDIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLA 180
           D TKDIRLFINS GGSLSATMAIYDVVQLVRADVST+ +GIAASTASIILGGGTKGKR A
Sbjct: 121 DPTKDIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFA 180

Query: 181 MPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRY 240
           MPN RIM+HQPLGGASGQAIDVEIQAREIMHNKNN+TRIIS  TG PFE+V KDIDRDRY
Sbjct: 181 MPNTRIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRY 240

Query: 241 MSPIEAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFLSPDVPDDEIY 295
           MSPIEAVEYG+IDGVID+DSIIPL PVPERVKASLNY EISKDP+KFL+PD+PDDEIY
Sbjct: 241 MSPIEAVEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

The following BLAST results are available for this feature:

BLAST of Carg23564 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923515.1	1.3e-155	99.66	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Cucurbita ...	[more]
XP_023553095.1	1.3e-155	99.32	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Cucurbita ...	[more]
XP_022965370.1	2.1e-153	98.30	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Cucurbita ...	[more]
XP_008448589.1	4.7e-145	93.54	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucu...	[more]
XP_022145352.1	2.3e-144	93.20	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Momordica chara...	[more]

BLAST of Carg23564 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45390.1	1.3e-99	78.51	CLP protease P4	[more]
AT1G66670.1	8.3e-51	47.32	CLP protease proteolytic subunit 3	[more]
AT1G02560.1	3.0e-45	52.10	nuclear encoded CLP protease 5	[more]
AT1G11750.2	2.8e-38	36.33	CLP protease proteolytic subunit 6	[more]
AT5G23140.1	1.4e-37	37.21	nuclear-encoded CLP protease P7	[more]

BLAST of Carg23564 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94B60\|CLPP4_ARATH	2.3e-98	78.51	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis t...	[more]
sp\|Q3ANI8\|CLPP1_SYNSC	5.8e-54	55.61	ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC...	[more]
sp\|Q3B0U1\|CLPP2_SYNS9	1.3e-53	55.08	ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC...	[more]
sp\|Q7V992\|CLPP1_PROMM	8.4e-53	55.08	ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (str...	[more]
sp\|O34125\|CLPP2_SYNE7	1.4e-52	53.93	ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (str...	[more]

BLAST of Carg23564 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BJF4\|A0A1S3BJF4_CUCME	3.1e-145	93.54	ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A0A0L3S1\|A0A0A0L3S1_CUCSA	2.8e-138	88.78	ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus OX=3659 GN=Csa...	[more]
tr\|A0A0D2R6I8\|A0A0D2R6I8_GOSRA	5.6e-110	75.50	ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii OX=29730 G...	[more]
tr\|A0A1U8IV12\|A0A1U8IV12_GOSHI	2.1e-109	75.17	ATP-dependent Clp protease proteolytic subunit OS=Gossypium hirsutum OX=3635 GN=...	[more]
tr\|A0A2P5RSP6\|A0A2P5RSP6_GOSBA	2.1e-109	75.17	ATP-dependent Clp protease proteolytic subunit OS=Gossypium barbadense OX=3634 G...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Molecular Function**
Term	Definition
GO:0004252	serine-type endopeptidase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR029045	ClpP/crotonase-like_dom_sf
IPR033135	ClpP_His_AS
IPR023562	ClpP/TepA
IPR001907	ClpP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004252	serine-type endopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23564-RA	Carg23564-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 152..169 score: 50.56 coord: 121..141 score: 55.0 coord: 173..192 score: 57.75 coord: 81..96 score: 46.88 coord: 230..249 score: 56.38
IPR001907	ATP-dependent Clp protease proteolytic subunit	HAMAP	MF_00444	ClpP	coord: 66..255 score: 36.681
IPR001907	ATP-dependent Clp protease proteolytic subunit	CDD	cd07017	S14_ClpP_2	coord: 81..251 e-value: 7.56036E-95 score: 279.326
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 80..254 e-value: 1.8E-71 score: 239.7
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 28..294
None	No IPR available	GENE3D	G3DSA:3.90.226.10		coord: 41..257 e-value: 4.5E-65 score: 221.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..75
None	No IPR available	PANTHER	PTHR10381:SF24	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 4, CHLOROPLASTIC	coord: 28..294
IPR033135	ClpP, histidine active site	PROSITE	PS00382	CLP_PROTEASE_HIS	coord: 174..187
IPR029045	ClpP/crotonase-like domain superfamily	SUPERFAMILY	SSF52096	ClpP/crotonase	coord: 80..257

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23564	Cla008866	Watermelon (97103) v1	carwmB1049
Carg23564	Csa3G005040	Cucumber (Chinese Long) v2	carcuB1064
Carg23564	MELO3C013793	Melon (DHL92) v3.5.1	carmeB1017
Carg23564	ClCG10G001000	Watermelon (Charleston Gray)	carwcgB1021
Carg23564	CSPI03G01000	Wild cucumber (PI 183967)	carcpiB1085
Carg23564	Cucsa.322370	Cucumber (Gy14) v1	carcgyB1164
Carg23564	CmaCh06G006000	Cucurbita maxima (Rimu)	carcmaB1454
Carg23564	CmaCh16G012180	Cucurbita maxima (Rimu)	carcmaB1453
Carg23564	CmoCh06G006060	Cucurbita moschata (Rifu)	carcmoB1409
Carg23564	CmoCh16G012620	Cucurbita moschata (Rifu)	carcmoB1407
Carg23564	Lsi07G011300	Bottle gourd (USVL1VR-Ls)	carlsiB958
Carg23564	Cp4.1LG14g10100	Cucurbita pepo (Zucchini)	carcpeB1461
Carg23564	Cp4.1LG08g09080	Cucurbita pepo (Zucchini)	carcpeB1463
Carg23564	CsGy3G000950	Cucumber (Gy14) v2	carcgybB1033
Carg23564	MELO3C013793.2	Melon (DHL92) v3.6.1	carmedB1029
Carg23564	CsaV3_3G001040	Cucumber (Chinese Long) v3	carcucB1097
Carg23564	Cla97C10G185620	Watermelon (97103) v2	carwmbB1107

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23564	Carg16286	Silver-seed gourd	carcarB575

The following block(s) are covering this gene:

None