Cp4.1LG08g09080 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g09080
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	ATP-dependent Clp protease proteolytic subunit
Location	Cp4.1LG08 : 7119804 .. 7124160 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACCCAAGAAAATCCGCGAAAGTCGTCATCTCTCCGCTTCTTCTTGGTTTCAGAGTTGAAGCAGAGCAGTGCTGTAAATCCATGGAGCTTCTTTCACGGTGTTCTACTCTTGTTCCTCACGCCTCCTCTCTTGGGCTTCCGAATTTTCATGGAAAATCTTCAGTTTTCTATCCCAAATGCAAATCCAGCCTCTCATTTCCTTCGTCTTCATCAGTCCTCAAAGCAACCGCTCTTAAACCCTCCAGAACCCTAGCTCCGCCCTGCTCCGTCCTTATGACGAATCCACAGACGCCGGATTCCGCCCGGACTGGCGCTGAGACTGATGCCATGGGACTGCTTCTCAGAGAGAGGATCGTTTTCTTGGGGAACAACATTGATGACTTTGTGGCCGATGCTATTATTAGCCAGCTCTTGCTCTTGGATGCTCAGGATTCTTCTAAGGATATCAGACTCTTCATTAATTCCTCCGGCGGCTCTCTGAGGTATGATTTTTTGTACAGTGTAGTGGGTGAAGATGTGGAATATGAGATTCAGGTTCATTTTTATTCTGCAATTCGAACAAAATATTCATAATATATAGCAATACTCGTGTAATGTAGAGTGAGTTATCATTAGAAATGCTTCTGAATGATGAAAATAATTTGAAATAAGCAAGAACCGATTGTTTGGGAGTTAGTTTTCCTTGTTACATGGAACTGAGCTGGTCCTCTTATTCCTTAGGTGGCTTGGTTGTTTGTAATGTGAGAACTAGAAACACCGTTCTCCTCTCAAAGCGGATGTGCTATGTTCATATTCTTGTGTGAAAAGAACGCCCTTAGAAGAGGCTTAATCAAGAGTCAAATTGGGATTGGCAACCTTTGGAGAAACTTAGATCCTAGAATTGACATCGGTAAAACAAAAGATTTCTTTGATCATATTGTTTTCTTGAAGAATGGCAATGGTCGGAGTCATTAACTTTGGACAAACACCTGGCTCGATCCTTCTCGTCTTAGCCACATTTTCCAAATATCTTCTCTATTTCGAATGCTGAAGACTTTCTTATTAGAGATTTTTGGTATGGGGCAGTCTAAACATGGAATTTTCAGCTCAGAAGGAGCCCGTGTGATAGAGAACCAGAGGTATGGTTGATCCTCATTCAAAAGATGAAAAGCAACCATCTAAATCTTAGTAAGGACAAATTTTGTTGGAATTTTTTAGATAATTGGCTTGTTTCCTTGCAAATCTGCTGATCTCCAGCTGATCAGTAGAGAAGGCAGGTTGGATAAACCCTATTTTCTCTTATTTGGAAAGTAAAAGACTTCGTTCTTCCTTTGGGCCATGGCTTACAAAAGTCCAAACACTTGTGATTTGGATTCGAAAGATGAACCTTTCCATGGCTTTATATAGCAATATATTGCACAAAAGATTTGCATGTGAAGGAACCCCATTTCCTATAAGGACCAATTTCCCAAATCATACTCTTTTGGGAAAAGGGCTAACACTCTTCCTAAGAGAGTAAGCACGCTGGCAAGATCAGAATTCCTTTTCAACAATTAAACATTCAGGTTTCTTGTTCTTTCCCTATGACATTTAGTGGCTGATGATAAAGTGTAGATGTGGTGGAAGTTTGACTATACCAAAGTTTCCCTAATTACTAAAGTATGGCCGTGATGCATCTATCATCAGTCTCTCCCTTTTCCTTTGTGGTACATTTTGAATGACTTGCTAGGAGTTGTGAAAAAGAGTTGAGAAGTAGGAGAGTTTAAGCATCTTAACACACCATTCGGAATTGTGCGTTTTCAAAACATCTATATGCTATTATTCTAATTGTATCAAGTTTTACTTTGAGCTAGATAAAACTTGGTGCTACACGAGTACAGATTTATCTTGAAATCAATTAATGTGTGTGTGTGTGTGTGTGTGTGTATGCATATAATGATGCAACCAATCACTTACAACTAGTTTCTGCATTGGAGTCAGAACTGAATAGTTCTTTTCAAACTTCAATGGGAAATTTTGCCTCCTTAAGATTTTTCCTTTCTTTGGTGAGGGGATATGCCTCTTGGGCCACCACTGGGGAAATTTTGATGTGCTTGGGTCTGTGTCTAGAGATGAATGTATTCGTCTAATCTACTTTTCAACATGAATGGGAAGATCAACAAACTATGGGAACACATACATATCTCCCTGATTGTTTATTTAATTTCTGGTTTATTCTCGTTTCCATGATTTGCAGGGTCTTTTTTGTACCTTGGGAAATCTTAGAGTAACTTAGTTTATATTTATGTGGCTTACAAATGACCTTTTCATGATCTCTTCTCCGCATCTTTGATTCACAACTAATTTTAATGGTAAACCTGTCAATCACCACCAAATCATCGTTTTTCAAAATGTATATTGGTATGTAACTACATAAGGATGCTCATGAGAGGCGTCAGCAGAAGAAACTATGTACTCTGCCTGGGTCCAGTTCATTTGTCAGCAAAGGTTATGTTTTAAGTTCCACATCGGTTTATCCTCATTTTGATTAAGAAACACACCTTCCAACTTCGTACTAATCCACATATATCCCAAGTTTGCGGTGTCTTCTTTCAACCAATCGCTTATTACCTCTCTTTCGTACTAGCAATGGAGAATAGATTTTATACAACATCTGACTCAAAGGTGTGAGATCCCCACATCGATTGGGGAGGAGAACGAACCATTCTATATAAGGGTGTGGAAACCTCTCCCTAACAGACGCGTTTTAGAAACCTTGAGGGGAAGCCTGAAAGGGAAAGCCCAAAGAGGACAGTATCTGTTAGCAGTGGGCTTGAACTATTACAAATGATATTAGAGCCAGACATCGGGCGATGTGCAAACAATGACGATGGGCCCTGAAGGGGGGTGAACACAAGATGGTGTGCAAGCAAGGACGCCTCAAAGGGGGTGGATTGGGGGTCCCACATCAGTTGGAGAAGGGAACGAATGCCAGCGAGGATGCTGGGCCCCGAAGGGGGGTGGATTGTGAGATCCCACGTCGGTTGGGGAAGAGAACGAAACATTCTTTATAAGGATATGGAAACTTCTCCCTAGAAGACGCGTTTTAAAAACTTTGAGGGGAAGCCCGAAAGGGAAATCCCAAAGAGGACAATATCTGCTAACGGTGGGCTTGGGCCGTTACAAAATTAGACTAAGGGCAGAAAGTTGGTTTTTTTTTCTCGTCTCCCAGGACTTAAAAGATTTTAGAAGTAGCAGTGTCATCTTTATAAGTATACGAATTCTCTTGACATTATTCAATTACATGCTCGAGATATCAACTGAATAGGCTTTTTAATATATATTTCTGTTTTCCTTCTTCTGTCTTGGGAATTTAGGCTGGGAGGACGTTCAGCTTTCAATGTGACTGCTGGGAATTTAGGTTAATATTTGTTGTTTGGTTGCTGTTCATTAACCGACTGATTTCTTTCTACTAATGTTGTTTTGATTAGTGCTACAATGGCTATCATCGACGTCTTACAGCTTGTGAGAGCTGATGTCTCCACAATTGCACTGGGCATTGCAGCTTCAACAGCTTCCATAATCCTCGGCGGTGGTACTAAAGGAAAGCGTTTCGCAATGCCTAATGCGCGTATTATGGTTCATCAACCCCTTGGAGGGGCGAGTGGCCAAGCAATAGATGTCGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACGTAATCAGAATTATCTCCAACTACACTGGCCATCCATTTGAGAAGGTCCAAAAAGATATCGATCGGGATCGTTATATGTCGCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAAGACACCATTATACCTCTCATGCAACTGCCAGAAAGAGTGAAGGCAACGTTAAATTATGAAGAAATTAGTAAAGATCCCAGAAAATTCTTGACACCAGACATCCCCGATGACGAGATATACTAGTTTCGGGTGTTTCGATGAACCGTTCTCTAGGCTTTTGAATTTCATGATTCACTTGTAGAATCTTACTTCAGCAAAGTCATGGTAAGTGGAAAATCGAAACTCGATGATGTGCTACTCAGCTTTTCGAGTATCGTTTTTGAGCTAAACGTCTCTACTTACTAGAAGTTAGAGGTCATGGGAATTTGGACTCCTTTTTCGTCCATGACATTTTCAAATGAGCATTCTGAGAAAAGAAAAATTGGCAGAGTTTATTTCATAGCTTTGTTTGATTAATTTCTTCTTCGTCCCAAACAGAACTGTTTAGTGTCAATAAACTGAAATTTCTTGTTGAACTTCATTCAGGGCTTCCATTTTATAGTTTGACTTAGAGGTCCCTATGTAACTCTAAAAGATATCTAATAAATTTATGAACTTCAATGTAAA

mRNA sequence

CCACCCAAGAAAATCCGCGAAAGTCGTCATCTCTCCGCTTCTTCTTGGTTTCAGAGTTGAAGCAGAGCAGTGCTGTAAATCCATGGAGCTTCTTTCACGGTGTTCTACTCTTGTTCCTCACGCCTCCTCTCTTGGGCTTCCGAATTTTCATGGAAAATCTTCAGTTTTCTATCCCAAATGCAAATCCAGCCTCTCATTTCCTTCGTCTTCATCAGTCCTCAAAGCAACCGCTCTTAAACCCTCCAGAACCCTAGCTCCGCCCTGCTCCGTCCTTATGACGAATCCACAGACGCCGGATTCCGCCCGGACTGGCGCTGAGACTGATGCCATGGGACTGCTTCTCAGAGAGAGGATCGTTTTCTTGGGGAACAACATTGATGACTTTGTGGCCGATGCTATTATTAGCCAGCTCTTGCTCTTGGATGCTCAGGATTCTTCTAAGGATATCAGACTCTTCATTAATTCCTCCGGCGGCTCTCTGAGTGCTACAATGGCTATCATCGACGTCTTACAGCTTGTGAGAGCTGATGTCTCCACAATTGCACTGGGCATTGCAGCTTCAACAGCTTCCATAATCCTCGGCGGTGGTACTAAAGGAAAGCGTTTCGCAATGCCTAATGCGCGTATTATGGTTCATCAACCCCTTGGAGGGGCGAGTGGCCAAGCAATAGATGTCGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACGTAATCAGAATTATCTCCAACTACACTGGCCATCCATTTGAGAAGGTCCAAAAAGATATCGATCGGGATCGTTATATGTCGCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAAGACACCATTATACCTCTCATGCAACTGCCAGAAAGAGTGAAGGCAACGTTAAATTATGAAGAAATTAGTAAAGATCCCAGAAAATTCTTGACACCAGACATCCCCGATGACGAGATATACTAGTTTCGGGTGTTTCGATGAACCGTTCTCTAGGCTTTTGAATTTCATGATTCACTTGTAGAATCTTACTTCAGCAAAGTCATGGTAAGTGGAAAATCGAAACTCGATGATGTGCTACTCAGCTTTTCGAGTATCGTTTTTGAGCTAAACGTCTCTACTTACTAGAAGTTAGAGGTCATGGGAATTTGGACTCCTTTTTCGTCCATGACATTTTCAAATGAGCATTCTGAGAAAAGAAAAATTGGCAGAGTTTATTTCATAGCTTTGTTTGATTAATTTCTTCTTCGTCCCAAACAGAACTGTTTAGTGTCAATAAACTGAAATTTCTTGTTGAACTTCATTCAGGGCTTCCATTTTATAGTTTGACTTAGAGGTCCCTATGTAACTCTAAAAGATATCTAATAAATTTATGAACTTCAATGTAAA

Coding sequence (CDS)

ATGGAGCTTCTTTCACGGTGTTCTACTCTTGTTCCTCACGCCTCCTCTCTTGGGCTTCCGAATTTTCATGGAAAATCTTCAGTTTTCTATCCCAAATGCAAATCCAGCCTCTCATTTCCTTCGTCTTCATCAGTCCTCAAAGCAACCGCTCTTAAACCCTCCAGAACCCTAGCTCCGCCCTGCTCCGTCCTTATGACGAATCCACAGACGCCGGATTCCGCCCGGACTGGCGCTGAGACTGATGCCATGGGACTGCTTCTCAGAGAGAGGATCGTTTTCTTGGGGAACAACATTGATGACTTTGTGGCCGATGCTATTATTAGCCAGCTCTTGCTCTTGGATGCTCAGGATTCTTCTAAGGATATCAGACTCTTCATTAATTCCTCCGGCGGCTCTCTGAGTGCTACAATGGCTATCATCGACGTCTTACAGCTTGTGAGAGCTGATGTCTCCACAATTGCACTGGGCATTGCAGCTTCAACAGCTTCCATAATCCTCGGCGGTGGTACTAAAGGAAAGCGTTTCGCAATGCCTAATGCGCGTATTATGGTTCATCAACCCCTTGGAGGGGCGAGTGGCCAAGCAATAGATGTCGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACGTAATCAGAATTATCTCCAACTACACTGGCCATCCATTTGAGAAGGTCCAAAAAGATATCGATCGGGATCGTTATATGTCGCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAAGACACCATTATACCTCTCATGCAACTGCCAGAAAGAGTGAAGGCAACGTTAAATTATGAAGAAATTAGTAAAGATCCCAGAAAATTCTTGACACCAGACATCCCCGATGACGAGATATACTAG

Protein sequence

MELLSRCSTLVPHASSLGLPNFHGKSSVFYPKCKSSLSFPSSSSVLKATALKPSRTLAPPCSVLMTNPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSSKDIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDIPDDEIY

Homology

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BLAST of Cp4.1LG08g09080 vs. Swiss-Prot
Match: CLPP4_ARATH (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana GN=CLPP4 PE=1 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 2.2e-98
Identity = 205/305 (67.21%), Postives = 233/305 (76.39%), Query Frame = 1


Query: 1   MELLSRCSTLVPHASSLGLPNFHGKSSVFYPKCKSSLSFPSSSSVLKATALKPSRTLAPP 60
           M  LS  S+L P   SL     +  SS       SS SFP  +++     LKP++ ++PP
Sbjct: 1   MGTLSLSSSLKP---SLVSSRLNSSSSA------SSSSFPKPNNLY----LKPTKLISPP 60

Query: 61  CSVLMTNP-----------QTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQ 120
                 +P           QT +SA  GAE+D MGLLLRERIVFLG++IDDFVADAI+SQ
Sbjct: 61  LRTTSPSPLRFANASIEMSQTQESAIRGAESDVMGLLLRERIVFLGSSIDDFVADAIMSQ 120

Query: 121 LLLLDAQDSSKDIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGG 180
           LLLLDA+D  KDI+LFINS GGSLSATMAI DV+QLVRADVSTIALGIAASTASIILG G
Sbjct: 121 LLLLDAKDPKKDIKLFINSPGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAG 180

Query: 181 TKGKRFAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQK 240
           TKGKRFAMPN RIM+HQPLGGASGQAIDVEIQA+E+MHNKNNV  II+  T   FE+V K
Sbjct: 181 TKGKRFAMPNTRIMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLK 240

Query: 241 DIDRDRYMSPIEAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDIP 295
           DIDRDRYMSPIEAVEYGLIDGVID D+IIPL  +P+RVK  +NYEEISKDP KFLTP+IP
Sbjct: 241 DIDRDRYMSPIEAVEYGLIDGVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIP 292

[Close]

BLAST of Cp4.1LG08g09080 vs. Swiss-Prot
Match: CLPP1_SYNSC (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9605) GN=clpP1 PE=3 SV=2)

HSP 1 Score: 206.8 bits (525), Expect = 3.2e-52
Identity = 100/181 (55.25%), Postives = 136/181 (75.14%), Query Frame = 1


Query: 73  SARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSSKDIRLFINSSGGS 132
           S R     D    LLRERI+FLG  +DD VADA+++Q+L L+A+D  KDI+++INS GGS
Sbjct: 16  SGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYINSPGGS 75

Query: 133 LSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGAS 192
           ++A +AI D +Q V  DV TI  G+AAS  + +L GGTKGKR A+PNARIM+HQPLGGA 
Sbjct: 76  VTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQ 135

Query: 193 GQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVI 252
           GQA+D+EIQA+EI++ K  +  +++ +TG P +K+ +D DRD ++SP EAVEYGLID V+
Sbjct: 136 GQAVDIEIQAKEILYLKETLNGLMAEHTGQPLDKISEDTDRDYFLSPAEAVEYGLIDRVV 195

Query: 253 D 254
           D
Sbjct: 196 D 196

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BLAST of Cp4.1LG08g09080 vs. Swiss-Prot
Match: CLPP2_SYNS9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9902) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 7.0e-52
Identity = 99/181 (54.70%), Postives = 135/181 (74.59%), Query Frame = 1


Query: 73  SARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSSKDIRLFINSSGGS 132
           S R     D    LLRERI+FLG  +DD VADA+++Q+L L+A+D  KDI++++NS GGS
Sbjct: 16  SGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYVNSPGGS 75

Query: 133 LSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGAS 192
           ++A +AI D +Q V  DV TI  G+AAS  + +L GGTKGKR A+PNARIM+HQPLGGA 
Sbjct: 76  VTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQ 135

Query: 193 GQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVI 252
           GQA+D+EIQA+EI+  K  +  +++ +TG P +K+ +D DRD ++SP EAVEYGLID V+
Sbjct: 136 GQAVDIEIQAKEILFLKETLNGLLAEHTGQPLDKISEDTDRDYFLSPAEAVEYGLIDRVV 195

Query: 253 D 254
           D
Sbjct: 196 D 196

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BLAST of Cp4.1LG08g09080 vs. Swiss-Prot
Match: CLPP3_SYNP6 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.6e-51
Identity = 102/185 (55.14%), Postives = 138/185 (74.59%), Query Frame = 1


Query: 73  SARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSSKDIRLFINSSGGS 132
           S R     D    LLRERIVFLG  +DD VAD+I++QLL L+A+D  KDI+L+INS GGS
Sbjct: 45  SGRGERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGS 104

Query: 133 LSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGAS 192
           ++A MAI D +Q V  DV+TI  G+AAS  + +L GG +GKR A+P+ARIM+HQPLGGA 
Sbjct: 105 VTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQ 164

Query: 193 GQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVI 252
           GQA+D+EIQAREI+++K+ +  +++ +TG P EK++ D DRD +MSP EA  YGLID V+
Sbjct: 165 GQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 224

Query: 253 DKDTI 258
            + T+
Sbjct: 225 TRPTM 229

[Close]

BLAST of Cp4.1LG08g09080 vs. Swiss-Prot
Match: CLPP2_SYNE7 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.6e-51
Identity = 102/185 (55.14%), Postives = 138/185 (74.59%), Query Frame = 1


Query: 73  SARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSSKDIRLFINSSGGS 132
           S R     D    LLRERIVFLG  +DD VAD+I++QLL L+A+D  KDI+L+INS GGS
Sbjct: 45  SGRGERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGS 104

Query: 133 LSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGAS 192
           ++A MAI D +Q V  DV+TI  G+AAS  + +L GG +GKR A+P+ARIM+HQPLGGA 
Sbjct: 105 VTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQ 164

Query: 193 GQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVI 252
           GQA+D+EIQAREI+++K+ +  +++ +TG P EK++ D DRD +MSP EA  YGLID V+
Sbjct: 165 GQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 224

Query: 253 DKDTI 258
            + T+
Sbjct: 225 TRPTM 229

[Close]

BLAST of Cp4.1LG08g09080 vs. TrEMBL
Match: A0A0A0L3S1_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G005040 PE=3 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 7.4e-133
Identity = 250/294 (85.03%), Postives = 271/294 (92.18%), Query Frame = 1


Query: 1   MELLSRCSTLVPHASSLGLPNFHGKSSVFYPKCKSSLSFPSSSSVLKATALKPSRTLAPP 60
           MELLSRCSTL PHASSLGLPN HGK S F+PK KS+LSFPS+SSVLK TALKPSRTL PP
Sbjct: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  CSVLMTNPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSSK 120
           CSV MT PQTPD+AR GAETDAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDA+DS+K
Sbjct: 61  CSV-MTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINS+GGSLS+TMAI DV+QLVRADVSTIALGIAASTASIILGGGTKGKR AMPNA
Sbjct: 121 DIRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASG A+DVEIQAREIM NK+NVIRIIS +TGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDIPDDEIY 295
           EAVEYG IDGVID+D+IIPLM +P++VK   NY E+ KDP KFLTPD+PDDEI+
Sbjct: 241 EAVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIF 293

[Close]

BLAST of Cp4.1LG08g09080 vs. TrEMBL
Match: A0A0D2R6I8_GOSRA (ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii GN=B456_004G175000 PE=3 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 9.7e-109
Identity = 225/298 (75.50%), Postives = 244/298 (81.88%), Query Frame = 1


Query: 1   MELLSRCSTLVPHASSLGLPNFHGKSSVFYPKCKSSLSFPSSSSVLKA---TALKPSRTL 60
           M LLS  S+L P  SSL L           PK K SL+FP+ S V  A   T L  S  L
Sbjct: 1   MGLLSLSSSLTPSFSSLHLK----------PKHKLSLTFPNPSFVCSAPTSTPLSSSLKL 60

Query: 61  APPCSVL-MTNPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ 120
            P  + L ++ PQ+P +A  GAE DAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ
Sbjct: 61  KPTANSLKLSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ 120

Query: 121 DSSKDIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFA 180
           D +KDIRLFINS GGSLSATMAI DV+QLVRADVST+ +GIAASTASIILGGGTKGKRFA
Sbjct: 121 DPTKDIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFA 180

Query: 181 MPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRY 240
           MPN RIM+HQPLGGASGQAIDVEIQAREIMHNKNNV RIIS  TG PFE+V KDIDRDRY
Sbjct: 181 MPNTRIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRY 240

Query: 241 MSPIEAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDIPDDEIY 295
           MSPIEAVEYG+IDGVID+D+IIPL  +PERVKA+LNYEEISKDPRKFLTPDIPDDEIY
Sbjct: 241 MSPIEAVEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of Cp4.1LG08g09080 vs. TrEMBL
Match: A0A061G8D9_THECC (ATP-dependent Clp protease proteolytic subunit OS=Theobroma cacao GN=TCM_016742 PE=3 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 1.1e-107
Identity = 220/294 (74.83%), Postives = 244/294 (82.99%), Query Frame = 1


Query: 1   MELLSRCSTLVPHASSLGLPNFHGKSSVFYPKCKSSLSFPSSSSVLKATALKPSRTLAPP 60
           M+LLS  S L P  SSL L   H K+S   P  K S    + + V  +  +K +    P 
Sbjct: 1   MDLLSLSSPLTPSLSSLQLKLKH-KTSFTSPNPKPSFLCLTPTPVSSSVKVKTT----PK 60

Query: 61  CSVLMTNPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSSK 120
           C + ++ PQ+P +A  GAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQD +K
Sbjct: 61  C-LQLSAPQSPATAMRGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPNK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINS GGSLSATMAI DV+QLVRADVST+ALGIAASTASIILGGGTKGKR AMPN 
Sbjct: 121 DIRLFINSPGGSLSATMAIYDVVQLVRADVSTVALGIAASTASIILGGGTKGKRLAMPNT 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIM+HQPLGGASGQAIDVEIQA+EIMHNKNNV RIIS +TG  FE+VQKDIDRDRYMSPI
Sbjct: 181 RIMIHQPLGGASGQAIDVEIQAQEIMHNKNNVTRIISGFTGRSFEQVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDIPDDEIY 295
           EAVEYG+IDGVID+D+IIPL  +PERVKA+LNYEEISKDPRKFLTPDIPDDEIY
Sbjct: 241 EAVEYGIIDGVIDRDSIIPLAPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of Cp4.1LG08g09080 vs. TrEMBL
Match: A0A0B0PZ48_GOSAR (ATP-dependent Clp protease proteolytic subunit OS=Gossypium arboreum GN=F383_15783 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 2.4e-107
Identity = 217/294 (73.81%), Postives = 241/294 (81.97%), Query Frame = 1


Query: 1   MELLSRCSTLVPHASSLGLPNFHGKSSVFYPKCKSSLSFPSSSSVLKATALKPSRTLAPP 60
           M LLS  S+L P   SL L   H K S+ +P    + S P+S  +  +  LKP+      
Sbjct: 1   MGLLSLSSSLTPSFPSLHLKPKH-KLSLTFPNPSFACSAPTSKPLSSSLKLKPTAN---- 60

Query: 61  CSVLMTNPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSSK 120
            S+  + PQ+P +A  GAE DAMGLLLRERIVFLGNNIDDF ADAIISQLLLLDAQD +K
Sbjct: 61  -SLKFSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFAADAIISQLLLLDAQDPTK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINS GGSLSATMAI DV+QLVRADVST+ +GIAASTASIILGGGTKGKRFAMPN 
Sbjct: 121 DIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFAMPNT 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIM+HQPLGGASGQAIDVEIQAREIMHNKNNV RIIS  TG PFE+V KDIDRDRYMSPI
Sbjct: 181 RIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDIPDDEIY 295
           EA+EYG+IDGVID+D+IIPL  +PERVKA+LNYEEISKDPRKFLTPDIPDDEIY
Sbjct: 241 EALEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of Cp4.1LG08g09080 vs. TrEMBL
Match: A0A059CBQ6_EUCGR (ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus grandis GN=EUGRSUZ_D00191 PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 3.2e-104
Identity = 206/269 (76.58%), Postives = 230/269 (85.50%), Query Frame = 1


Query: 34  KSSLSFP-------SSSSVLKATALKPSRTLAPPCS-VLMTNPQTPDSARTGAETDAMGL 93
           + S+S P       SS     A +LKP    AP  + VL   PQ P +A  GAE DAMGL
Sbjct: 77  RKSMSLPHAPPPPLSSLKTHLAPSLKPRPAAAPAAAAVLSAAPQDPATAMRGAEADAMGL 136

Query: 94  LLRERIVFLGNNIDDFVADAIISQLLLLDAQDSSKDIRLFINSSGGSLSATMAIIDVLQL 153
           LLRERIVFLG+ IDDFVADAIISQLLLLDAQD +KDIRLF+NS GGSLSATMAI DV+QL
Sbjct: 137 LLRERIVFLGSGIDDFVADAIISQLLLLDAQDHTKDIRLFVNSPGGSLSATMAIYDVVQL 196

Query: 154 VRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGASGQAIDVEIQAREI 213
           VRADVST+ALGI+ASTASIILGGGTKGKR AMPN RIM+HQPLGGASGQAIDVEIQA+E+
Sbjct: 197 VRADVSTVALGISASTASIILGGGTKGKRLAMPNTRIMIHQPLGGASGQAIDVEIQAKEV 256

Query: 214 MHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVIDKDTIIPLMQLPE 273
           MHNK+NV RIIS++TG PFE+V+KDIDRDRYMSPIEAVEYG+IDGVID+D+IIPLM +PE
Sbjct: 257 MHNKSNVTRIISSFTGRPFEQVEKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIPLMPVPE 316

Query: 274 RVKATLNYEEISKDPRKFLTPDIPDDEIY 295
           RVK+TLNYEEISKDPRKFLTPDIPDDEIY
Sbjct: 317 RVKSTLNYEEISKDPRKFLTPDIPDDEIY 345

[Close]

BLAST of Cp4.1LG08g09080 vs. TAIR10
Match: AT5G45390.1 (AT5G45390.1 CLP protease P4)

HSP 1 Score: 360.1 bits (923), Expect = 1.3e-99
Identity = 205/305 (67.21%), Postives = 233/305 (76.39%), Query Frame = 1


Query: 1   MELLSRCSTLVPHASSLGLPNFHGKSSVFYPKCKSSLSFPSSSSVLKATALKPSRTLAPP 60
           M  LS  S+L P   SL     +  SS       SS SFP  +++     LKP++ ++PP
Sbjct: 1   MGTLSLSSSLKP---SLVSSRLNSSSSA------SSSSFPKPNNLY----LKPTKLISPP 60

Query: 61  CSVLMTNP-----------QTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQ 120
                 +P           QT +SA  GAE+D MGLLLRERIVFLG++IDDFVADAI+SQ
Sbjct: 61  LRTTSPSPLRFANASIEMSQTQESAIRGAESDVMGLLLRERIVFLGSSIDDFVADAIMSQ 120

Query: 121 LLLLDAQDSSKDIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGG 180
           LLLLDA+D  KDI+LFINS GGSLSATMAI DV+QLVRADVSTIALGIAASTASIILG G
Sbjct: 121 LLLLDAKDPKKDIKLFINSPGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAG 180

Query: 181 TKGKRFAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQK 240
           TKGKRFAMPN RIM+HQPLGGASGQAIDVEIQA+E+MHNKNNV  II+  T   FE+V K
Sbjct: 181 TKGKRFAMPNTRIMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLK 240

Query: 241 DIDRDRYMSPIEAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDIP 295
           DIDRDRYMSPIEAVEYGLIDGVID D+IIPL  +P+RVK  +NYEEISKDP KFLTP+IP
Sbjct: 241 DIDRDRYMSPIEAVEYGLIDGVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIP 292

[Close]

BLAST of Cp4.1LG08g09080 vs. TAIR10
Match: AT1G66670.1 (AT1G66670.1 CLP protease proteolytic subunit 3)

HSP 1 Score: 193.7 bits (491), Expect = 1.6e-49
Identity = 106/227 (46.70%), Postives = 150/227 (66.08%), Query Frame = 1


Query: 31  PKCKSSLSFPSSSSVLKATALKPSRTLAPPCSV----LMTNPQTPDSARTGAETDAMGLL 90
           PK        SS S+ K     P +TL+    V    + +  Q+P    +  E D   +L
Sbjct: 35  PKTSKPFCVRSSMSLSKP----PRQTLSSNWDVSSFSIDSVAQSPSRLPSFEELDTTNML 94

Query: 91  LRERIVFLGNNIDDFVADAIISQLLLLDAQDSSKDIRLFINSSGGSLSATMAIIDVLQLV 150
           LR+RIVFLG+ +DD  AD +ISQLLLLDA+DS +DI LFINS GGS++A M I D ++  
Sbjct: 95  LRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIYDAMKQC 154

Query: 151 RADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGASGQAIDVEIQAREIM 210
           +ADVST+ LG+AAS  + +L  G+KGKR+ MPN+++M+HQPLG A G+A ++ I+ RE+M
Sbjct: 155 KADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMSIRIREMM 214

Query: 211 HNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVID 254
           ++K  + +I S  TG P  +++ D DRD +++P EA EYGLID VID
Sbjct: 215 YHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVID 257

[Close]

BLAST of Cp4.1LG08g09080 vs. TAIR10
Match: AT1G02560.1 (AT1G02560.1 nuclear encoded CLP protease 5)

HSP 1 Score: 176.8 bits (447), Expect = 2.0e-44
Identity = 86/167 (51.50%), Postives = 124/167 (74.25%), Query Frame = 1


Query: 86  LLRERIVFLGNNIDDFVADAIISQLLLLDAQDSSKDIRLFINSSGGSLSATMAIIDVLQL 145
           L + RI+  G  +DD +A+ I++QLL LDA D +KDI +++NS GGS++A MAI D ++ 
Sbjct: 119 LFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRH 178

Query: 146 VRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGASGQAIDVEIQAREI 205
           +R DVST+ +G+AAS  + +L  GTKGKR+++PN+RIM+HQPLGGA G   D++IQA E+
Sbjct: 179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM 238

Query: 206 MHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVI 253
           +H+K N+   ++ +TG   EK+ +D DRD +MS  EA EYGLIDGVI
Sbjct: 239 LHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 285

[Close]

BLAST of Cp4.1LG08g09080 vs. TAIR10
Match: AT1G11750.2 (AT1G11750.2 CLP protease proteolytic subunit 6)

HSP 1 Score: 151.4 bits (381), Expect = 8.9e-37
Identity = 86/238 (36.13%), Postives = 131/238 (55.04%), Query Frame = 1


Query: 34  KSSLSFPSSSSVLKATALKPSRTLAPPCSVLMTN----------------PQTPDSARTG 93
           K+ LS   S S +K     PS    P  ++L ++                P  P     G
Sbjct: 51  KAGLSSNVSGSPIKIDNKAPSSLPLPILNILKSSTVYFIFGVIEAKKGNPPVMPSVMTPG 110

Query: 94  AETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSSKDIRLFINSSGGSLSATM 153
              D   +L R RI+F+G  I+  VA  +ISQL+ L + D   DI +++N  GGS  + +
Sbjct: 111 GPLDLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVL 170

Query: 154 AIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGASGQAID 213
           AI D +  ++  V T+A G+AAS  +++L GG KG R+AMPN R+M+HQP  G  G   D
Sbjct: 171 AIYDCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVED 230

Query: 214 VEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVIDKD 256
           V  Q  E +  +  + R+ + +TG P EKVQ+  +RDR++S  EA+E+GLIDG+++ +
Sbjct: 231 VRRQVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEALEFGLIDGLLETE 288

[Close]

BLAST of Cp4.1LG08g09080 vs. TAIR10
Match: AT5G23140.1 (AT5G23140.1 nuclear-encoded CLP protease P7)

HSP 1 Score: 150.6 bits (379), Expect = 1.5e-36
Identity = 75/182 (41.21%), Postives = 121/182 (66.48%), Query Frame = 1


Query: 73  SARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSSKDIRLFINSSGGS 132
           S+R     D    LL+ERI+ +   I+D  +  +++QLL L++++ SK I +++NS GG 
Sbjct: 40  SSRGERAYDIFSRLLKERIICINGPINDDTSHVVVAQLLYLESENPSKPIHMYLNSPGGH 99

Query: 133 LSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGAS 192
           ++A +AI D +Q +R+ +STI LG AAS AS++L  G KG+R ++PNA +M+HQP GG S
Sbjct: 100 VTAGLAIYDTMQYIRSPISTICLGQAASMASLLLAAGAKGQRRSLPNATVMIHQPSGGYS 159

Query: 193 GQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVI 252
           GQA D+ I  ++I+   + +  +   +TG P + V  ++DRD +M+P EA  +G+ID VI
Sbjct: 160 GQAKDITIHTKQIVRVWDALNELYVKHTGQPLDVVANNMDRDHFMTPEEAKAFGIIDEVI 219

Query: 253 DK 255
           D+
Sbjct: 220 DE 221

[Close]

BLAST of Cp4.1LG08g09080 vs. NCBI nr
Match: gi|659095454|ref|XP_008448589.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucumis melo])

HSP 1 Score: 503.1 bits (1294), Expect = 3.4e-139
Identity = 262/294 (89.12%), Postives = 279/294 (94.90%), Query Frame = 1


Query: 1   MELLSRCSTLVPHASSLGLPNFHGKSSVFYPKCKSSLSFPSSSSVLKATALKPSRTLAPP 60
           MELLSRCSTL+P ASSLGLPN HGK S F+PK KS+LSFPS+SSVLK TALKPSRTL PP
Sbjct: 1   MELLSRCSTLIPQASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  CSVLMTNPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSSK 120
           CSV MT PQTPD++R GAETDAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDAQDS+K
Sbjct: 61  CSV-MTAPQTPDASRRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINS+GGSLSATMAI DV+QLVRADVSTIALGIAASTASIILGGGTKGKR AMPNA
Sbjct: 121 DIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASGQAIDVEIQAREIMHNKNNV RIIS +TGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDIPDDEIY 295
           EAVEYGLIDGVID+D+IIPL+ +PERVKATLNYEE+SKDPRKFLTPD+PDDEIY
Sbjct: 241 EAVEYGLIDGVIDRDSIIPLVPVPERVKATLNYEEMSKDPRKFLTPDVPDDEIY 293

[Close]

BLAST of Cp4.1LG08g09080 vs. NCBI nr
Match: gi|449456777|ref|XP_004146125.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucumis sativus])

HSP 1 Score: 481.5 bits (1238), Expect = 1.1e-132
Identity = 250/294 (85.03%), Postives = 271/294 (92.18%), Query Frame = 1


Query: 1   MELLSRCSTLVPHASSLGLPNFHGKSSVFYPKCKSSLSFPSSSSVLKATALKPSRTLAPP 60
           MELLSRCSTL PHASSLGLPN HGK S F+PK KS+LSFPS+SSVLK TALKPSRTL PP
Sbjct: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  CSVLMTNPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSSK 120
           CSV MT PQTPD+AR GAETDAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDA+DS+K
Sbjct: 61  CSV-MTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINS+GGSLS+TMAI DV+QLVRADVSTIALGIAASTASIILGGGTKGKR AMPNA
Sbjct: 121 DIRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASG A+DVEIQAREIM NK+NVIRIIS +TGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDIPDDEIY 295
           EAVEYG IDGVID+D+IIPLM +P++VK   NY E+ KDP KFLTPD+PDDEI+
Sbjct: 241 EAVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIF 293

[Close]

BLAST of Cp4.1LG08g09080 vs. NCBI nr
Match: gi|823151327|ref|XP_012475491.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Gossypium raimondii])

HSP 1 Score: 401.4 bits (1030), Expect = 1.4e-108
Identity = 225/298 (75.50%), Postives = 244/298 (81.88%), Query Frame = 1


Query: 1   MELLSRCSTLVPHASSLGLPNFHGKSSVFYPKCKSSLSFPSSSSVLKA---TALKPSRTL 60
           M LLS  S+L P  SSL L           PK K SL+FP+ S V  A   T L  S  L
Sbjct: 1   MGLLSLSSSLTPSFSSLHLK----------PKHKLSLTFPNPSFVCSAPTSTPLSSSLKL 60

Query: 61  APPCSVL-MTNPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ 120
            P  + L ++ PQ+P +A  GAE DAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ
Sbjct: 61  KPTANSLKLSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ 120

Query: 121 DSSKDIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFA 180
           D +KDIRLFINS GGSLSATMAI DV+QLVRADVST+ +GIAASTASIILGGGTKGKRFA
Sbjct: 121 DPTKDIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFA 180

Query: 181 MPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRY 240
           MPN RIM+HQPLGGASGQAIDVEIQAREIMHNKNNV RIIS  TG PFE+V KDIDRDRY
Sbjct: 181 MPNTRIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRY 240

Query: 241 MSPIEAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDIPDDEIY 295
           MSPIEAVEYG+IDGVID+D+IIPL  +PERVKA+LNYEEISKDPRKFLTPDIPDDEIY
Sbjct: 241 MSPIEAVEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of Cp4.1LG08g09080 vs. NCBI nr
Match: gi|590680694|ref|XP_007040931.1| (ATP-dependent Clp protease proteolytic subunit 4 [Theobroma cacao])

HSP 1 Score: 397.9 bits (1021), Expect = 1.5e-107
Identity = 220/294 (74.83%), Postives = 244/294 (82.99%), Query Frame = 1


Query: 1   MELLSRCSTLVPHASSLGLPNFHGKSSVFYPKCKSSLSFPSSSSVLKATALKPSRTLAPP 60
           M+LLS  S L P  SSL L   H K+S   P  K S    + + V  +  +K +    P 
Sbjct: 1   MDLLSLSSPLTPSLSSLQLKLKH-KTSFTSPNPKPSFLCLTPTPVSSSVKVKTT----PK 60

Query: 61  CSVLMTNPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSSK 120
           C + ++ PQ+P +A  GAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQD +K
Sbjct: 61  C-LQLSAPQSPATAMRGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPNK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINS GGSLSATMAI DV+QLVRADVST+ALGIAASTASIILGGGTKGKR AMPN 
Sbjct: 121 DIRLFINSPGGSLSATMAIYDVVQLVRADVSTVALGIAASTASIILGGGTKGKRLAMPNT 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIM+HQPLGGASGQAIDVEIQA+EIMHNKNNV RIIS +TG  FE+VQKDIDRDRYMSPI
Sbjct: 181 RIMIHQPLGGASGQAIDVEIQAQEIMHNKNNVTRIISGFTGRSFEQVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDIPDDEIY 295
           EAVEYG+IDGVID+D+IIPL  +PERVKA+LNYEEISKDPRKFLTPDIPDDEIY
Sbjct: 241 EAVEYGIIDGVIDRDSIIPLAPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of Cp4.1LG08g09080 vs. NCBI nr
Match: gi|728849303|gb|KHG28746.1| (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic -like protein [Gossypium arboreum])

HSP 1 Score: 396.7 bits (1018), Expect = 3.4e-107
Identity = 217/294 (73.81%), Postives = 241/294 (81.97%), Query Frame = 1


Query: 1   MELLSRCSTLVPHASSLGLPNFHGKSSVFYPKCKSSLSFPSSSSVLKATALKPSRTLAPP 60
           M LLS  S+L P   SL L   H K S+ +P    + S P+S  +  +  LKP+      
Sbjct: 1   MGLLSLSSSLTPSFPSLHLKPKH-KLSLTFPNPSFACSAPTSKPLSSSLKLKPTAN---- 60

Query: 61  CSVLMTNPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSSK 120
            S+  + PQ+P +A  GAE DAMGLLLRERIVFLGNNIDDF ADAIISQLLLLDAQD +K
Sbjct: 61  -SLKFSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFAADAIISQLLLLDAQDPTK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINS GGSLSATMAI DV+QLVRADVST+ +GIAASTASIILGGGTKGKRFAMPN 
Sbjct: 121 DIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFAMPNT 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIM+HQPLGGASGQAIDVEIQAREIMHNKNNV RIIS  TG PFE+V KDIDRDRYMSPI
Sbjct: 181 RIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDIPDDEIY 295
           EA+EYG+IDGVID+D+IIPL  +PERVKA+LNYEEISKDPRKFLTPDIPDDEIY
Sbjct: 241 EALEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g09080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLPP4_ARATH	2.2e-98	67.21	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis t...	[more]
CLPP1_SYNSC	3.2e-52	55.25	ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC...	[more]
CLPP2_SYNS9	7.0e-52	54.70	ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC...	[more]
CLPP3_SYNP6	1.6e-51	55.14	ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain AT...	[more]
CLPP2_SYNE7	1.6e-51	55.14	ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (str...	[more]

BLAST of Cp4.1LG08g09080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3S1_CUCSA	7.4e-133	85.03	ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G00504...	[more]
A0A0D2R6I8_GOSRA	9.7e-109	75.50	ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii GN=B456_00...	[more]
A0A061G8D9_THECC	1.1e-107	74.83	ATP-dependent Clp protease proteolytic subunit OS=Theobroma cacao GN=TCM_016742 ...	[more]
A0A0B0PZ48_GOSAR	2.4e-107	73.81	ATP-dependent Clp protease proteolytic subunit OS=Gossypium arboreum GN=F383_157...	[more]
A0A059CBQ6_EUCGR	3.2e-104	76.58	ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus grandis GN=EUGRSUZ_...	[more]

BLAST of Cp4.1LG08g09080 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45390.1	1.3e-99	67.21	CLP protease P4	[more]
AT1G66670.1	1.6e-49	46.70	CLP protease proteolytic subunit 3	[more]
AT1G02560.1	2.0e-44	51.50	nuclear encoded CLP protease 5	[more]
AT1G11750.2	8.9e-37	36.13	CLP protease proteolytic subunit 6	[more]
AT5G23140.1	1.5e-36	41.21	nuclear-encoded CLP protease P7	[more]

BLAST of Cp4.1LG08g09080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095454\|ref\|XP_008448589.1\|	3.4e-139	89.12	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucu...	[more]
gi\|449456777\|ref\|XP_004146125.1\|	1.1e-132	85.03	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucu...	[more]
gi\|823151327\|ref\|XP_012475491.1\|	1.4e-108	75.50	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Goss...	[more]
gi\|590680694\|ref\|XP_007040931.1\|	1.5e-107	74.83	ATP-dependent Clp protease proteolytic subunit 4 [Theobroma cacao]	[more]
gi\|728849303\|gb\|KHG28746.1\|	3.4e-107	73.81	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic -like protein [G...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Molecular Function**
Term	Definition
GO:0004252	serine-type endopeptidase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR023562	ClpP/TepA
IPR001907	ClpP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0006508	proteolysis
biological_process	GO:0048510	regulation of timing of transition from vegetative to reproductive phase
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009840	chloroplastic endopeptidase Clp complex
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004252	serine-type endopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g09080.1	Cp4.1LG08g09080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 152..169 score: 3.6E-40coord: 121..141 score: 3.6E-40coord: 173..192 score: 3.6E-40coord: 81..96 score: 3.6E-40coord: 230..249 score: 3.6
IPR001907	ATP-dependent Clp protease proteolytic subunit	HAMAP	MF_00444	ClpP	coord: 66..255 score: 36
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 8..294 score: 2.6E
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 80..254 score: 2.4
None	No IPR available	PANTHER	PTHR10381:SF24	SUBFAMILY NOT NAMED	coord: 8..294 score: 2.6E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g09080	Cucsa.322370	Cucumber (Gy14) v1	cgycpeB0854
Cp4.1LG08g09080	CmaCh16G012180	Cucurbita maxima (Rimu)	cmacpeB363
Cp4.1LG08g09080	CmoCh16G012620	Cucurbita moschata (Rifu)	cmocpeB327
Cp4.1LG08g09080	CmoCh06G006060	Cucurbita moschata (Rifu)	cmocpeB797
Cp4.1LG08g09080	Cla008866	Watermelon (97103) v1	cpewmB829
Cp4.1LG08g09080	Csa3G005040	Cucumber (Chinese Long) v2	cpecuB863
Cp4.1LG08g09080	MELO3C013793	Melon (DHL92) v3.5.1	cpemeB808
Cp4.1LG08g09080	ClCG10G001000	Watermelon (Charleston Gray)	cpewcgB772
Cp4.1LG08g09080	CSPI03G01000	Wild cucumber (PI 183967)	cpecpiB865
Cp4.1LG08g09080	Lsi07G011300	Bottle gourd (USVL1VR-Ls)	cpelsiB725
Cp4.1LG08g09080	MELO3C013793.2	Melon (DHL92) v3.6.1	cpemedB952
Cp4.1LG08g09080	CsaV3_3G001040	Cucumber (Chinese Long) v3	cpecucB1059
Cp4.1LG08g09080	BhiUN179G3	Wax gourd	cpewgoB1137
Cp4.1LG08g09080	CsGy3G000950	Cucumber (Gy14) v2	cgybcpeB456
Cp4.1LG08g09080	Carg23564	Silver-seed gourd	carcpeB1463
Cp4.1LG08g09080	Carg16286	Silver-seed gourd	carcpeB0957

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG08g09080	Cp4.1LG14g10100	Cucurbita pepo (Zucchini)	cpecpeB249

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g09080	Cucurbita maxima (Rimu)	cmacpeB852