Lsi07G011300 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G011300
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	ATP-dependent Clp protease proteolytic subunit
Location	chr07 : 16740003 .. 16744302 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGGGGCATTAGTGCTATTTTGATAAATGCATGGGTGGATTATTGAAATTTCCAAATTTCCCAAACTTTTAGCAATCTGTATTTCTCACCCAACCAAATCCCCAAAGTCATCGTCTCTCCGATTCTTCCTGGTTTCAGAGCTGAAGCAGAGCAGTGCTGTAAATCCATGGAGCTTCTTTCACGCTGTTCTACTCTTATTCCTCACGCCTCCTCTCTCGGCCTCCCAAATTCTCATGGAAAACCATCAAATTTCTTCCCCAAGCTCAAATCCACTCTCTCCTTTTCTTCGGCTTCATCAGTCCTCAAAACAACCTCTCTTAAACCCTCGAGAACCCTAGCTCCACCGTGCTCCGTCCTTATGACGGCTCCACAGACGCCGGATGCCGCCCGTAGAGGCGCCGAGACTGACGCCATGGGCCTGCTTCTCAGGGAGAGGATCGTCTTCTTGGGGAACAGCATTGATGACTTTGTGGCCGATGCTATTATCAGTCAGCTCTTGCTCTTGGATGCTCAGGACTCTACTAAAGATATCAGACTCTTCATTAATTCCGCTGGCGGCTCTCTCAGGTATTCACGAGTTGATTTTTTGTGCATAATGTAGTTGGTAAAGATATGGAATATGTGATTAGGGCTCAGTTTTATTCTTTCCAAACGATTTAGGTAATTTAATTTCTATTAATATGCCTAATTTTCTTTAGAGTTTTATTCACCTGCATTGCAAACAGTTAGCCCACTCGTTGGTGCATTCATTCCCGTGACTATTCTGGTTCTAGAGTTGACATTGATAAAACAAGAGATTTCTTTGATCAGTGCCCTTTAAAAGAATGGCAATGGTTGGAGTTTTAAATTTAGGAGCAGGACAAACACCTGGCTTCATCCTTCCCGTCTAAGTTATATTTTCCAAACATTTTCTGAATTTCCAAATGCTAAAGATTTTTGGAATGGGGCAATCTGAACTTGGGATTTTCAGCTCAGAAGAAACCCCTTTGACTTGATAGAGAGCCATAAGAATGGTTGACATTTGTTCAAAAGATGGAAAGCAATCAGCTAAATCTTACTATCTTAGTAAAGATAAATTTTGTTGGAAGTTTGAAACCTTTGTCTTGTATCCACTTGCAAATCTTCCAACCTCCAGCTGAATTGTAGAGAAAGCAGGTTGGATGAACCCTTTTTATCTTCGGTTTGGGGAGGAAAAGACTTCGTTCTTCATTTGGACTATGGCTTACAAGAGCCTAAACACTTGTGATTGGATTAAAAAGAAGAACCCTTCCATGGCTTTATCTCCTTATGTTTGCCCTTTCTTTTCCTCTTTTTTTTGAAACGGAAACAGAACTTTTCATTGATATAATGAAAAGAGCAAAGGCTCCAATTACAATGAGACAAAACCAAATAAGCTAAGAAATTTAGAAACATAGGATCAGGAGGTGCATCCGGATATCTCAACTAGGTTGACACAGCCCTAGCACCCTCATCATTTTCCTATACAAAATACAAAAATTCAGAAAAAGCCAATATTCTTAGCTACTTGGTTACATAGAAATAATAAGAGCATTCCAATTGAGATAAATGTCCTAAATAGAATAATCTTCAAAGAGTTTGGACTGGGAGCTCCAAGAAGAAGCTAAGAGATGGGTTGAACCCCATCTGTCTAACCAATCCTTTGAACTATCATGGAAGACTCTCTAATTACGTTCAAACCAAATCTCAGAAATCAAGGCTTTGACTGCATTTGTCCATAATAACTGTGAGCTCTAGAAGAGTGAGAAGGACCAACCAAAAGATGAGAGATATTATCCGTAACTGTGTTGCCCAAAACCCATTGAAAACCAAAGCAAGAAAATAATTTCCACCAACAATTTCTGGAGAAAGAGCAATCAAATAACAAGTGATGCAAATCCTCTCCGTTTGCTGAACATAGAGGACAAATTGAGGGTGAAAGATATTTATTTCGAAGCTTATTTTGCAAAGTAAATGAACAATTGAGGGAACCAAAAGTTTAGCCAATCAAAAACTCCATTTTCTATAATGATCAATTTCCCAAATCTCCTTTGGAAAATGACTAACACTCCTCCTCCTAAGTGAGTGAGCATGTTGGCCAAATAAAAATCTTTTCAACAATTAAACATCCAGGCCTTCTTGTTCAATCCCTATGACATTCTCAGTGGCAGGTGATAAAGCATAGAGGTGGTGGAAGTTTAAGATACTAAAGGTTCCCTAATTACTAAAGTATGGTAGTAATGCATCTATTACCCGTCTCTCCCTTTTCATTTGTGGTATATTTTGAATAACTTGCTAGGAGTTATGAAAAAGAACTGAATTCAGAATGTAAAAACATCTACATATTATTATCTATTTGTATCAAGTTCTATGTTGCACTGGATAACACTTGGTCCCACACAGTATAATTTTATCTTGAAAGCATGTAATCTATATATATAATATGCAACCAATCTTTACATCTAATTTTTTGCATTTGAATGAGAACTGAATATTTCTTTTCATACTTCAATGGAGAAATGTAATGTGCTTGTCTATGGCTAGAGATGAGTGTATTCGTCTACTTTACTTTACTACATGAATGGGAAGATTAGCCAACTGTGAGAACTATACATATCTTCCCTGATTGTTAATTTATTTCTGTTTTATTCTTGTTTCGATGCTTTCCATGGCCTTCATGTACATAGGAAATCTTCTAGAGTAATTTAATTTAGATTTCTGTGGTTTATGGATCACCTTTTCATAATCTTCTCTTGGCATCTTTGATGTGCAACCAGTTTCTAATGGTAAATCTATCATTCACTACCAAACCATCATTTTTCGAAATGTATATTGATATGTAACTTAAGGATGCTCGTGAGACTTGAGAGGCGTCAACAGAAGAAACTACGTACTTTGCCTAACCCAGTTCATTTTTCAGAAAATGTTATGTTTTTAAGTTCCACGTCCACTTATCCTCATGTTGATTAAGGAACACACTTCCAACTATCTTGTAATCCAAACCCTGTCTTCCAATTGTCTATCAAACAGATTCCTTCCCGGTCCAATGGAGTAGATATTATGAAATACCTGACTCAAAGGTGGAATCAAACCAGTTATCTTCCTAGATTCTAAGCCCGTTTCCCATCTTATAAAGAAAACCCTTTCCCGATGAACCCATACATTTAGCTAGACCAGACCAGGGGCAAAAGGCAGACTAGCTTACGTAGTTTTATTTGTTCTCAGAGCACCAGGACTTAAAATTTTAGAAGTGGGAGTGCCATATTCATGACTCACGAGTATATGAATTCTCTTGTCATTGTTTATTTGAAGCTGGAAATATCGATTACTAGGCTTTTTAAATATATATATTTCTGTTTTTCCCTCTCTGGTCCTGAGAAAATTTAGGTTAGGAGGATATTCAGCTTTCTATGAGCGGCACCTGATCTCATTTAATTTTATTTTGAAAGTGGATGGTCTTCTTAGTTAATATTTGGTGTTTGGTTGCAGTACATTAACCTTGACTGATTTCCTTCTATTAATTTCGTTTTCATTAGTGCTACCATGGCTATCTACGATGTCGTACAGCTCGTGAGGGCTGATGTCTCCACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGTGGTGGCACTAAAGGAAAGCGTCTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGGCAAGCAATAGATGTGGAAATTCAAGCACGCGAAATCATGCATAACAAGAACAATGTTACAAGAATCATCTCCGAATTCACTGGCCATCCATTTGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCGCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATTGACAAAGATAGCATTATACCTCTCATGCCAGTGCCAGAAAGAGTGAAAGCAAGTTTAAATTATGAAGAAATTAGTAAAGATCCCAGAAAATTCTTGACACCAGATGTCCCTGACGACGAGATATATTAGTTTCTGGCGTTTCGGCAAACCTTTCTTTAGGCTTTTGATTTATATGATTTACATGTAGGATCTTATGTGTAAGCAAAGTCATGGTAGGTGGAAACTAGAAATATGCTGGAAATTGATGACCTAAACACCTTTAGAGTATCAACTTTTGGCAAATTGTCTCTACTTACCAGAAGTTAAAAGGTATTGGGTATTTGGACTCTTTTTTTGTCTATGACATTTCAAATGAGCATTCTGAGTAAGGAAAAATTGGCATTGAGTCATATTTTTTATTGGCAGTGTAT

mRNA sequence

ATTTGGGGCATTAGTGCTATTTTGATAAATGCATGGGTGGATTATTGAAATTTCCAAATTTCCCAAACTTTTAGCAATCTGTATTTCTCACCCAACCAAATCCCCAAAGTCATCGTCTCTCCGATTCTTCCTGGTTTCAGAGCTGAAGCAGAGCAGTGCTGTAAATCCATGGAGCTTCTTTCACGCTGTTCTACTCTTATTCCTCACGCCTCCTCTCTCGGCCTCCCAAATTCTCATGGAAAACCATCAAATTTCTTCCCCAAGCTCAAATCCACTCTCTCCTTTTCTTCGGCTTCATCAGTCCTCAAAACAACCTCTCTTAAACCCTCGAGAACCCTAGCTCCACCGTGCTCCGTCCTTATGACGGCTCCACAGACGCCGGATGCCGCCCGTAGAGGCGCCGAGACTGACGCCATGGGCCTGCTTCTCAGGGAGAGGATCGTCTTCTTGGGGAACAGCATTGATGACTTTGTGGCCGATGCTATTATCAGTCAGCTCTTGCTCTTGGATGCTCAGGACTCTACTAAAGATATCAGACTCTTCATTAATTCCGCTGGCGGCTCTCTCAGTGCTACCATGGCTATCTACGATGTCGTACAGCTCGTGAGGGCTGATGTCTCCACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGTGGTGGCACTAAAGGAAAGCGTCTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGGCAAGCAATAGATGTGGAAATTCAAGCACGCGAAATCATGCATAACAAGAACAATGTTACAAGAATCATCTCCGAATTCACTGGCCATCCATTTGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCGCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATTGACAAAGATAGCATTATACCTCTCATGCCAGTGCCAGAAAGAGTGAAAGCAAGTTTAAATTATGAAGAAATTAGTAAAGATCCCAGAAAATTCTTGACACCAGATGTCCCTGACGACGAGATATATTAGTTTCTGGCGTTTCGGCAAACCTTTCTTTAGGCTTTTGATTTATATGATTTACATGTAGGATCTTATGTGTAAGCAAAGTCATGGTAGGTGGAAACTAGAAATATGCTGGAAATTGATGACCTAAACACCTTTAGAGTATCAACTTTTGGCAAATTGTCTCTACTTACCAGAAGTTAAAAGGTATTGGGTATTTGGACTCTTTTTTTGTCTATGACATTTCAAATGAGCATTCTGAGTAAGGAAAAATTGGCATTGAGTCATATTTTTTATTGGCAGTGTAT

Coding sequence (CDS)

ATGGAGCTTCTTTCACGCTGTTCTACTCTTATTCCTCACGCCTCCTCTCTCGGCCTCCCAAATTCTCATGGAAAACCATCAAATTTCTTCCCCAAGCTCAAATCCACTCTCTCCTTTTCTTCGGCTTCATCAGTCCTCAAAACAACCTCTCTTAAACCCTCGAGAACCCTAGCTCCACCGTGCTCCGTCCTTATGACGGCTCCACAGACGCCGGATGCCGCCCGTAGAGGCGCCGAGACTGACGCCATGGGCCTGCTTCTCAGGGAGAGGATCGTCTTCTTGGGGAACAGCATTGATGACTTTGTGGCCGATGCTATTATCAGTCAGCTCTTGCTCTTGGATGCTCAGGACTCTACTAAAGATATCAGACTCTTCATTAATTCCGCTGGCGGCTCTCTCAGTGCTACCATGGCTATCTACGATGTCGTACAGCTCGTGAGGGCTGATGTCTCCACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGTGGTGGCACTAAAGGAAAGCGTCTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGGCAAGCAATAGATGTGGAAATTCAAGCACGCGAAATCATGCATAACAAGAACAATGTTACAAGAATCATCTCCGAATTCACTGGCCATCCATTTGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCGCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATTGACAAAGATAGCATTATACCTCTCATGCCAGTGCCAGAAAGAGTGAAAGCAAGTTTAAATTATGAAGAAATTAGTAAAGATCCCAGAAAATTCTTGACACCAGATGTCCCTGACGACGAGATATATTAG

Protein sequence

MELLSRCSTLIPHASSLGLPNSHGKPSNFFPKLKSTLSFSSASSVLKTTSLKPSRTLAPPCSVLMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVIDKDSIIPLMPVPERVKASLNYEEISKDPRKFLTPDVPDDEIY

Homology

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BLAST of Lsi07G011300 vs. Swiss-Prot
Match: CLPP4_ARATH (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana GN=CLPP4 PE=1 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 4.3e-102
Identity = 208/305 (68.20%), Postives = 233/305 (76.39%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLPNSHGKPSNFFPKLKSTLSFSSASSVLKTTSLKPSRTLAPP 60
           M  LS  S+L P   S  L +S    S+ FPK  +               LKP++ ++PP
Sbjct: 1   MGTLSLSSSLKPSLVSSRLNSSSSASSSSFPKPNNLY-------------LKPTKLISPP 60

Query: 61  CSVLMTAP-----------QTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQ 120
                 +P           QT ++A RGAE+D MGLLLRERIVFLG+SIDDFVADAI+SQ
Sbjct: 61  LRTTSPSPLRFANASIEMSQTQESAIRGAESDVMGLLLRERIVFLGSSIDDFVADAIMSQ 120

Query: 121 LLLLDAQDSTKDIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGG 180
           LLLLDA+D  KDI+LFINS GGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILG G
Sbjct: 121 LLLLDAKDPKKDIKLFINSPGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAG 180

Query: 181 TKGKRLAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQK 240
           TKGKR AMPN RIM+HQPLGGASGQAIDVEIQA+E+MHNKNNVT II+  T   FE+V K
Sbjct: 181 TKGKRFAMPNTRIMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLK 240

Query: 241 DIDRDRYMSPIEAVEYGLIDGVIDKDSIIPLMPVPERVKASLNYEEISKDPRKFLTPDVP 295
           DIDRDRYMSPIEAVEYGLIDGVID DSIIPL PVP+RVK  +NYEEISKDP KFLTP++P
Sbjct: 241 DIDRDRYMSPIEAVEYGLIDGVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIP 292

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BLAST of Lsi07G011300 vs. Swiss-Prot
Match: CLPP1_SYNSC (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9605) GN=clpP1 PE=3 SV=2)

HSP 1 Score: 212.2 bits (539), Expect = 7.5e-54
Identity = 106/195 (54.36%), Postives = 143/195 (73.33%), Query Frame = 1


Query: 60  PCSVLMTAPQTPDAARRGAET-DAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDS 119
           P S     P   + + RG    D    LLRERI+FLG  +DD VADA+++Q+L L+A+D 
Sbjct: 2   PVSAPGPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDP 61

Query: 120 TKDIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMP 179
            KDI+++INS GGS++A +AIYD +Q V  DV TI  G+AAS  + +L GGTKGKRLA+P
Sbjct: 62  EKDIQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALP 121

Query: 180 NARIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMS 239
           NARIM+HQPLGGA GQA+D+EIQA+EI++ K  +  +++E TG P +K+ +D DRD ++S
Sbjct: 122 NARIMIHQPLGGAQGQAVDIEIQAKEILYLKETLNGLMAEHTGQPLDKISEDTDRDYFLS 181

Query: 240 PIEAVEYGLIDGVID 254
           P EAVEYGLID V+D
Sbjct: 182 PAEAVEYGLIDRVVD 196

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BLAST of Lsi07G011300 vs. Swiss-Prot
Match: CLPP2_SYNS9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9902) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.7e-53
Identity = 105/195 (53.85%), Postives = 142/195 (72.82%), Query Frame = 1


Query: 60  PCSVLMTAPQTPDAARRGAET-DAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDS 119
           P S     P   + + RG    D    LLRERI+FLG  +DD VADA+++Q+L L+A+D 
Sbjct: 2   PISAPGPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDP 61

Query: 120 TKDIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMP 179
            KDI++++NS GGS++A +AIYD +Q V  DV TI  G+AAS  + +L GGTKGKRLA+P
Sbjct: 62  EKDIQIYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALP 121

Query: 180 NARIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMS 239
           NARIM+HQPLGGA GQA+D+EIQA+EI+  K  +  +++E TG P +K+ +D DRD ++S
Sbjct: 122 NARIMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLDKISEDTDRDYFLS 181

Query: 240 PIEAVEYGLIDGVID 254
           P EAVEYGLID V+D
Sbjct: 182 PAEAVEYGLIDRVVD 196

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BLAST of Lsi07G011300 vs. Swiss-Prot
Match: CLPP1_PROMM (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (strain MIT 9313) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.1e-52
Identity = 103/187 (55.08%), Postives = 139/187 (74.33%), Query Frame = 1


Query: 68  PQTPDAARRGAET-DAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFI 127
           P   + + RG    D    LLRERI+FLG  +DD VADA+++Q+L L+A+D  KDI+++I
Sbjct: 27  PTVVEQSGRGERAFDIYSRLLRERIIFLGTGVDDQVADALVAQMLFLEAEDPEKDIQIYI 86

Query: 128 NSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQ 187
           NS GGS++A +AIYD +Q V  DV TI  G+AAS  + +L GGTKGKRLA+PNARIM+HQ
Sbjct: 87  NSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLCGGTKGKRLALPNARIMIHQ 146

Query: 188 PLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYG 247
           PLGGA GQA+D+EIQA+EI+  K  +  +++E TG P  K+ +D DRD ++SP +AVEYG
Sbjct: 147 PLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLNKIAEDTDRDHFLSPAKAVEYG 206

Query: 248 LIDGVID 254
           LID V+D
Sbjct: 207 LIDRVVD 213

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BLAST of Lsi07G011300 vs. Swiss-Prot
Match: CLPP3_SYNP6 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.4e-52
Identity = 103/191 (53.93%), Postives = 143/191 (74.87%), Query Frame = 1


Query: 68  PQTPDAARRGAET-DAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFI 127
           P   + + RG    D    LLRERIVFLG  +DD VAD+I++QLL L+A+D  KDI+L+I
Sbjct: 39  PTVVEQSGRGERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYI 98

Query: 128 NSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQ 187
           NS GGS++A MAIYD +Q V  DV+TI  G+AAS  + +L GG +GKR+A+P+ARIM+HQ
Sbjct: 99  NSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQ 158

Query: 188 PLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYG 247
           PLGGA GQA+D+EIQAREI+++K+ +  ++++ TG P EK++ D DRD +MSP EA  YG
Sbjct: 159 PLGGAQGQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYG 218

Query: 248 LIDGVIDKDSI 258
           LID V+ + ++
Sbjct: 219 LIDQVLTRPTM 229

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BLAST of Lsi07G011300 vs. TrEMBL
Match: A0A0A0L3S1_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G005040 PE=3 SV=1)

HSP 1 Score: 515.4 bits (1326), Expect = 4.6e-143
Identity = 270/294 (91.84%), Postives = 280/294 (95.24%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLPNSHGKPSNFFPKLKSTLSFSSASSVLKTTSLKPSRTLAPP 60
           MELLSRCSTL PHASSLGLPNSHGKPSNFFPKLKSTLSF SASSVLKTT+LKPSRTL PP
Sbjct: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  CSVLMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
           CSV MTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDA+DSTK
Sbjct: 61  CSV-MTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTK 120

Query: 121 DIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINSAGGSLS+TMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA
Sbjct: 121 DIRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASG A+DVEIQAREIM NK+NV RIISEFTGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLMPVPERVKASLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYG IDGVID+DSIIPLMPVP++VK   NY E+ KDP KFLTPDVPDDEI+
Sbjct: 241 EAVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIF 293

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BLAST of Lsi07G011300 vs. TrEMBL
Match: A0A061G8D9_THECC (ATP-dependent Clp protease proteolytic subunit OS=Theobroma cacao GN=TCM_016742 PE=3 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 4.2e-112
Identity = 228/294 (77.55%), Postives = 247/294 (84.01%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLPNSHGKPSNFFPKLKSTLSFSSASSVLKTTSLKPSRTLAPP 60
           M+LLS  S L P  SSL L   H K S   P  K +    + + V  +  +K +    P 
Sbjct: 1   MDLLSLSSPLTPSLSSLQLKLKH-KTSFTSPNPKPSFLCLTPTPVSSSVKVKTT----PK 60

Query: 61  CSVLMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
           C + ++APQ+P  A RGAETDAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDAQD  K
Sbjct: 61  C-LQLSAPQSPATAMRGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPNK 120

Query: 121 DIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINS GGSLSATMAIYDVVQLVRADVST+ALGIAASTASIILGGGTKGKRLAMPN 
Sbjct: 121 DIRLFINSPGGSLSATMAIYDVVQLVRADVSTVALGIAASTASIILGGGTKGKRLAMPNT 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIM+HQPLGGASGQAIDVEIQA+EIMHNKNNVTRIIS FTG  FE+VQKDIDRDRYMSPI
Sbjct: 181 RIMIHQPLGGASGQAIDVEIQAQEIMHNKNNVTRIISGFTGRSFEQVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLMPVPERVKASLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYG+IDGVID+DSIIPL PVPERVKASLNYEEISKDPRKFLTPD+PDDEIY
Sbjct: 241 EAVEYGIIDGVIDRDSIIPLAPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

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BLAST of Lsi07G011300 vs. TrEMBL
Match: A0A0D2R6I8_GOSRA (ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii GN=B456_004G175000 PE=3 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 5.5e-112
Identity = 226/294 (76.87%), Postives = 245/294 (83.33%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLPNSHGKPSNFFPKLKSTLSFSSASSVLKTTSLKPSRTLAPP 60
           M LLS  S+L P  SSL L   H K S  FP      S  +++ +  +  LKP+      
Sbjct: 1   MGLLSLSSSLTPSFSSLHLKPKH-KLSLTFPNPSFVCSAPTSTPLSSSLKLKPTAN---- 60

Query: 61  CSVLMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
            S+ ++APQ+P  A RGAE DAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDAQD TK
Sbjct: 61  -SLKLSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPTK 120

Query: 121 DIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINS GGSLSATMAIYDVVQLVRADVST+ +GIAASTASIILGGGTKGKR AMPN 
Sbjct: 121 DIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFAMPNT 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIM+HQPLGGASGQAIDVEIQAREIMHNKNNVTRIIS  TG PFE+V KDIDRDRYMSPI
Sbjct: 181 RIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLMPVPERVKASLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYG+IDGVID+DSIIPL PVPERVKASLNYEEISKDPRKFLTPD+PDDEIY
Sbjct: 241 EAVEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of Lsi07G011300 vs. TrEMBL
Match: A0A0B0PZ48_GOSAR (ATP-dependent Clp protease proteolytic subunit OS=Gossypium arboreum GN=F383_15783 PE=3 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 3.0e-110
Identity = 223/294 (75.85%), Postives = 241/294 (81.97%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLPNSHGKPSNFFPKLKSTLSFSSASSVLKTTSLKPSRTLAPP 60
           M LLS  S+L P   SL L   H K S  FP      S  ++  +  +  LKP+      
Sbjct: 1   MGLLSLSSSLTPSFPSLHLKPKH-KLSLTFPNPSFACSAPTSKPLSSSLKLKPTAN---- 60

Query: 61  CSVLMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
            S+  +APQ+P  A RGAE DAMGLLLRERIVFLGN+IDDF ADAIISQLLLLDAQD TK
Sbjct: 61  -SLKFSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFAADAIISQLLLLDAQDPTK 120

Query: 121 DIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINS GGSLSATMAIYDVVQLVRADVST+ +GIAASTASIILGGGTKGKR AMPN 
Sbjct: 121 DIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFAMPNT 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIM+HQPLGGASGQAIDVEIQAREIMHNKNNVTRIIS  TG PFE+V KDIDRDRYMSPI
Sbjct: 181 RIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLMPVPERVKASLNYEEISKDPRKFLTPDVPDDEIY 295
           EA+EYG+IDGVID+DSIIPL PVPERVKASLNYEEISKDPRKFLTPD+PDDEIY
Sbjct: 241 EALEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of Lsi07G011300 vs. TrEMBL
Match: W9RI69_9ROSA (ATP-dependent Clp protease proteolytic subunit OS=Morus notabilis GN=L484_025970 PE=3 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 1.1e-109
Identity = 225/298 (75.50%), Postives = 250/298 (83.89%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLPNS-HGKP-SNFFP--KLKSTLSFSSASSVLKTTSLKPSRT 60
           M++LS  S +     S  LPNS   KP S+  P   LK+  + S A     T+S KP ++
Sbjct: 1   MDVLSLSSPI----PSFKLPNSSRPKPISSHLPISSLKTKRASSFAKCFQSTSSSKP-QS 60

Query: 61  LAPPCSVLMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQ 120
           L  P  +L ++PQTPD A R AE+DAMGLLLRERIVFLG+SIDDF+ADAIISQLLLLDAQ
Sbjct: 61  LLTPSLLLASSPQTPDTAMRSAESDAMGLLLRERIVFLGSSIDDFIADAIISQLLLLDAQ 120

Query: 121 DSTKDIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLA 180
           DSTKDI+LFINS GGSLSATMAIYDVVQLVRADVST+ALGIAASTAS+ILGGGTKGKR A
Sbjct: 121 DSTKDIKLFINSTGGSLSATMAIYDVVQLVRADVSTVALGIAASTASVILGGGTKGKRFA 180

Query: 181 MPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRY 240
           MPN RIM+HQPLGGASGQAIDVEIQAREIMHNKNNVT II+  TG  FE+VQKDIDRDRY
Sbjct: 181 MPNTRIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTSIIAHCTGRTFEQVQKDIDRDRY 240

Query: 241 MSPIEAVEYGLIDGVIDKDSIIPLMPVPERVKASLNYEEISKDPRKFLTPDVPDDEIY 295
           MSPIEAVEYGL+DGVID+DSIIPL+PVPERVKA + YEEISKDPRKFLTPDVPDDEIY
Sbjct: 241 MSPIEAVEYGLLDGVIDRDSIIPLVPVPERVKARITYEEISKDPRKFLTPDVPDDEIY 293

[Close]

BLAST of Lsi07G011300 vs. TAIR10
Match: AT5G45390.1 (AT5G45390.1 CLP protease P4)

HSP 1 Score: 372.5 bits (955), Expect = 2.4e-103
Identity = 208/305 (68.20%), Postives = 233/305 (76.39%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLPNSHGKPSNFFPKLKSTLSFSSASSVLKTTSLKPSRTLAPP 60
           M  LS  S+L P   S  L +S    S+ FPK  +               LKP++ ++PP
Sbjct: 1   MGTLSLSSSLKPSLVSSRLNSSSSASSSSFPKPNNLY-------------LKPTKLISPP 60

Query: 61  CSVLMTAP-----------QTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQ 120
                 +P           QT ++A RGAE+D MGLLLRERIVFLG+SIDDFVADAI+SQ
Sbjct: 61  LRTTSPSPLRFANASIEMSQTQESAIRGAESDVMGLLLRERIVFLGSSIDDFVADAIMSQ 120

Query: 121 LLLLDAQDSTKDIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGG 180
           LLLLDA+D  KDI+LFINS GGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILG G
Sbjct: 121 LLLLDAKDPKKDIKLFINSPGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAG 180

Query: 181 TKGKRLAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQK 240
           TKGKR AMPN RIM+HQPLGGASGQAIDVEIQA+E+MHNKNNVT II+  T   FE+V K
Sbjct: 181 TKGKRFAMPNTRIMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLK 240

Query: 241 DIDRDRYMSPIEAVEYGLIDGVIDKDSIIPLMPVPERVKASLNYEEISKDPRKFLTPDVP 295
           DIDRDRYMSPIEAVEYGLIDGVID DSIIPL PVP+RVK  +NYEEISKDP KFLTP++P
Sbjct: 241 DIDRDRYMSPIEAVEYGLIDGVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIP 292

[Close]

BLAST of Lsi07G011300 vs. TAIR10
Match: AT1G66670.1 (AT1G66670.1 CLP protease proteolytic subunit 3)

HSP 1 Score: 196.4 bits (498), Expect = 2.4e-50
Identity = 110/240 (45.83%), Postives = 153/240 (63.75%), Query Frame = 1


Query: 24  GKPSNF------FPKLKSTLSFSSASSVLKTTSLKPSRTLAPPCSV----LMTAPQTPDA 83
           GK  NF       PK        S+ S+ K     P +TL+    V    + +  Q+P  
Sbjct: 22  GKNLNFPIRNHRIPKTSKPFCVRSSMSLSKP----PRQTLSSNWDVSSFSIDSVAQSPSR 81

Query: 84  ARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFINSAGGSL 143
                E D   +LLR+RIVFLG+ +DD  AD +ISQLLLLDA+DS +DI LFINS GGS+
Sbjct: 82  LPSFEELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSI 141

Query: 144 SATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQPLGGASG 203
           +A M IYD ++  +ADVST+ LG+AAS  + +L  G+KGKR  MPN+++M+HQPLG A G
Sbjct: 142 TAGMGIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGG 201

Query: 204 QAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVID 254
           +A ++ I+ RE+M++K  + +I S  TG P  +++ D DRD +++P EA EYGLID VID
Sbjct: 202 KATEMSIRIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVID 257

[Close]

BLAST of Lsi07G011300 vs. TAIR10
Match: AT1G02560.1 (AT1G02560.1 nuclear encoded CLP protease 5)

HSP 1 Score: 179.1 bits (453), Expect = 4.0e-45
Identity = 87/167 (52.10%), Postives = 124/167 (74.25%), Query Frame = 1


Query: 86  LLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFINSAGGSLSATMAIYDVVQL 145
           L + RI+  G ++DD +A+ I++QLL LDA D TKDI +++NS GGS++A MAI+D ++ 
Sbjct: 119 LFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRH 178

Query: 146 VRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQPLGGASGQAIDVEIQAREI 205
           +R DVST+ +G+AAS  + +L  GTKGKR ++PN+RIM+HQPLGGA G   D++IQA E+
Sbjct: 179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM 238

Query: 206 MHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVI 253
           +H+K N+   ++  TG   EK+ +D DRD +MS  EA EYGLIDGVI
Sbjct: 239 LHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 285

[Close]

BLAST of Lsi07G011300 vs. TAIR10
Match: AT1G11750.2 (AT1G11750.2 CLP protease proteolytic subunit 6)

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-38
Identity = 89/245 (36.33%), Postives = 136/245 (55.51%), Query Frame = 1


Query: 27  SNFFPKLKSTLSFSSASSVLKTTSLKPSRTLAPPCSVLMTA----------------PQT 86
           S +   LK+ LS + + S +K  +  PS    P  ++L ++                P  
Sbjct: 44  SPYGDSLKAGLSSNVSGSPIKIDNKAPSSLPLPILNILKSSTVYFIFGVIEAKKGNPPVM 103

Query: 87  PDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFINSAG 146
           P     G   D   +L R RI+F+G  I+  VA  +ISQL+ L + D   DI +++N  G
Sbjct: 104 PSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDILMYLNCPG 163

Query: 147 GSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQPLGG 206
           GS  + +AIYD +  ++  V T+A G+AAS  +++L GG KG R AMPN R+M+HQP  G
Sbjct: 164 GSTYSVLAIYDCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVMIHQPQTG 223

Query: 207 ASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDG 256
             G   DV  Q  E +  +  + R+ + FTG P EKVQ+  +RDR++S  EA+E+GLIDG
Sbjct: 224 CGGHVEDVRRQVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEALEFGLIDG 283

[Close]

BLAST of Lsi07G011300 vs. TAIR10
Match: AT5G23140.1 (AT5G23140.1 nuclear-encoded CLP protease P7)

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-36
Identity = 80/215 (37.21%), Postives = 134/215 (62.33%), Query Frame = 1


Query: 41  SASSVLKTTSLKPSRTLAPPCSVLMTAPQTPDAARRGAET-DAMGLLLRERIVFLGNSID 100
           S + +L +T    + ++A         P   + + RG    D    LL+ERI+ +   I+
Sbjct: 7   SGAKMLSSTPSSMATSIATGRRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPIN 66

Query: 101 DFVADAIISQLLLLDAQDSTKDIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAA 160
           D  +  +++QLL L++++ +K I +++NS GG ++A +AIYD +Q +R+ +STI LG AA
Sbjct: 67  DDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPISTICLGQAA 126

Query: 161 STASIILGGGTKGKRLAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEF 220
           S AS++L  G KG+R ++PNA +M+HQP GG SGQA D+ I  ++I+   + +  +  + 
Sbjct: 127 SMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAKDITIHTKQIVRVWDALNELYVKH 186

Query: 221 TGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVIDK 255
           TG P + V  ++DRD +M+P EA  +G+ID VID+
Sbjct: 187 TGQPLDVVANNMDRDHFMTPEEAKAFGIIDEVIDE 221

[Close]

BLAST of Lsi07G011300 vs. NCBI nr
Match: gi|659095454|ref|XP_008448589.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucumis melo])

HSP 1 Score: 540.0 bits (1390), Expect = 2.5e-150
Identity = 284/294 (96.60%), Postives = 290/294 (98.64%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLPNSHGKPSNFFPKLKSTLSFSSASSVLKTTSLKPSRTLAPP 60
           MELLSRCSTLIP ASSLGLPNSHGKPSNFFPKLKSTLSF SASSVLKTT+LKPSRTL PP
Sbjct: 1   MELLSRCSTLIPQASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  CSVLMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
           CSV MTAPQTPDA+RRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK
Sbjct: 61  CSV-MTAPQTPDASRRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120

Query: 121 DIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA
Sbjct: 121 DIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLMPVPERVKASLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYGLIDGVID+DSIIPL+PVPERVKA+LNYEE+SKDPRKFLTPDVPDDEIY
Sbjct: 241 EAVEYGLIDGVIDRDSIIPLVPVPERVKATLNYEEMSKDPRKFLTPDVPDDEIY 293

[Close]

BLAST of Lsi07G011300 vs. NCBI nr
Match: gi|449456777|ref|XP_004146125.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucumis sativus])

HSP 1 Score: 515.4 bits (1326), Expect = 6.6e-143
Identity = 270/294 (91.84%), Postives = 280/294 (95.24%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLPNSHGKPSNFFPKLKSTLSFSSASSVLKTTSLKPSRTLAPP 60
           MELLSRCSTL PHASSLGLPNSHGKPSNFFPKLKSTLSF SASSVLKTT+LKPSRTL PP
Sbjct: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  CSVLMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
           CSV MTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDA+DSTK
Sbjct: 61  CSV-MTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTK 120

Query: 121 DIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINSAGGSLS+TMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA
Sbjct: 121 DIRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASG A+DVEIQAREIM NK+NV RIISEFTGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLMPVPERVKASLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYG IDGVID+DSIIPLMPVP++VK   NY E+ KDP KFLTPDVPDDEI+
Sbjct: 241 EAVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIF 293

[Close]

BLAST of Lsi07G011300 vs. NCBI nr
Match: gi|590680694|ref|XP_007040931.1| (ATP-dependent Clp protease proteolytic subunit 4 [Theobroma cacao])

HSP 1 Score: 412.5 bits (1059), Expect = 6.0e-112
Identity = 228/294 (77.55%), Postives = 247/294 (84.01%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLPNSHGKPSNFFPKLKSTLSFSSASSVLKTTSLKPSRTLAPP 60
           M+LLS  S L P  SSL L   H K S   P  K +    + + V  +  +K +    P 
Sbjct: 1   MDLLSLSSPLTPSLSSLQLKLKH-KTSFTSPNPKPSFLCLTPTPVSSSVKVKTT----PK 60

Query: 61  CSVLMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
           C + ++APQ+P  A RGAETDAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDAQD  K
Sbjct: 61  C-LQLSAPQSPATAMRGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPNK 120

Query: 121 DIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINS GGSLSATMAIYDVVQLVRADVST+ALGIAASTASIILGGGTKGKRLAMPN 
Sbjct: 121 DIRLFINSPGGSLSATMAIYDVVQLVRADVSTVALGIAASTASIILGGGTKGKRLAMPNT 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIM+HQPLGGASGQAIDVEIQA+EIMHNKNNVTRIIS FTG  FE+VQKDIDRDRYMSPI
Sbjct: 181 RIMIHQPLGGASGQAIDVEIQAQEIMHNKNNVTRIISGFTGRSFEQVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLMPVPERVKASLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYG+IDGVID+DSIIPL PVPERVKASLNYEEISKDPRKFLTPD+PDDEIY
Sbjct: 241 EAVEYGIIDGVIDRDSIIPLAPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of Lsi07G011300 vs. NCBI nr
Match: gi|823151327|ref|XP_012475491.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Gossypium raimondii])

HSP 1 Score: 412.1 bits (1058), Expect = 7.9e-112
Identity = 226/294 (76.87%), Postives = 245/294 (83.33%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLPNSHGKPSNFFPKLKSTLSFSSASSVLKTTSLKPSRTLAPP 60
           M LLS  S+L P  SSL L   H K S  FP      S  +++ +  +  LKP+      
Sbjct: 1   MGLLSLSSSLTPSFSSLHLKPKH-KLSLTFPNPSFVCSAPTSTPLSSSLKLKPTAN---- 60

Query: 61  CSVLMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
            S+ ++APQ+P  A RGAE DAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDAQD TK
Sbjct: 61  -SLKLSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPTK 120

Query: 121 DIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINS GGSLSATMAIYDVVQLVRADVST+ +GIAASTASIILGGGTKGKR AMPN 
Sbjct: 121 DIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFAMPNT 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIM+HQPLGGASGQAIDVEIQAREIMHNKNNVTRIIS  TG PFE+V KDIDRDRYMSPI
Sbjct: 181 RIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLMPVPERVKASLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYG+IDGVID+DSIIPL PVPERVKASLNYEEISKDPRKFLTPD+PDDEIY
Sbjct: 241 EAVEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of Lsi07G011300 vs. NCBI nr
Match: gi|728849303|gb|KHG28746.1| (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic -like protein [Gossypium arboreum])

HSP 1 Score: 406.4 bits (1043), Expect = 4.3e-110
Identity = 223/294 (75.85%), Postives = 241/294 (81.97%), Query Frame = 1


Query: 1   MELLSRCSTLIPHASSLGLPNSHGKPSNFFPKLKSTLSFSSASSVLKTTSLKPSRTLAPP 60
           M LLS  S+L P   SL L   H K S  FP      S  ++  +  +  LKP+      
Sbjct: 1   MGLLSLSSSLTPSFPSLHLKPKH-KLSLTFPNPSFACSAPTSKPLSSSLKLKPTAN---- 60

Query: 61  CSVLMTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120
            S+  +APQ+P  A RGAE DAMGLLLRERIVFLGN+IDDF ADAIISQLLLLDAQD TK
Sbjct: 61  -SLKFSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFAADAIISQLLLLDAQDPTK 120

Query: 121 DIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180
           DIRLFINS GGSLSATMAIYDVVQLVRADVST+ +GIAASTASIILGGGTKGKR AMPN 
Sbjct: 121 DIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFAMPNT 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPI 240
           RIM+HQPLGGASGQAIDVEIQAREIMHNKNNVTRIIS  TG PFE+V KDIDRDRYMSPI
Sbjct: 181 RIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDSIIPLMPVPERVKASLNYEEISKDPRKFLTPDVPDDEIY 295
           EA+EYG+IDGVID+DSIIPL PVPERVKASLNYEEISKDPRKFLTPD+PDDEIY
Sbjct: 241 EALEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

The following BLAST results are available for this feature:

BLAST of Lsi07G011300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLPP4_ARATH	4.3e-102	68.20	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis t...	[more]
CLPP1_SYNSC	7.5e-54	54.36	ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC...	[more]
CLPP2_SYNS9	1.7e-53	53.85	ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC...	[more]
CLPP1_PROMM	1.1e-52	55.08	ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (str...	[more]
CLPP3_SYNP6	2.4e-52	53.93	ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain AT...	[more]

BLAST of Lsi07G011300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3S1_CUCSA	4.6e-143	91.84	ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G00504...	[more]
A0A061G8D9_THECC	4.2e-112	77.55	ATP-dependent Clp protease proteolytic subunit OS=Theobroma cacao GN=TCM_016742 ...	[more]
A0A0D2R6I8_GOSRA	5.5e-112	76.87	ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii GN=B456_00...	[more]
A0A0B0PZ48_GOSAR	3.0e-110	75.85	ATP-dependent Clp protease proteolytic subunit OS=Gossypium arboreum GN=F383_157...	[more]
W9RI69_9ROSA	1.1e-109	75.50	ATP-dependent Clp protease proteolytic subunit OS=Morus notabilis GN=L484_025970...	[more]

BLAST of Lsi07G011300 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45390.1	2.4e-103	68.20	CLP protease P4	[more]
AT1G66670.1	2.4e-50	45.83	CLP protease proteolytic subunit 3	[more]
AT1G02560.1	4.0e-45	52.10	nuclear encoded CLP protease 5	[more]
AT1G11750.2	1.6e-38	36.33	CLP protease proteolytic subunit 6	[more]
AT5G23140.1	1.2e-36	37.21	nuclear-encoded CLP protease P7	[more]

BLAST of Lsi07G011300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095454\|ref\|XP_008448589.1\|	2.5e-150	96.60	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucu...	[more]
gi\|449456777\|ref\|XP_004146125.1\|	6.6e-143	91.84	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucu...	[more]
gi\|590680694\|ref\|XP_007040931.1\|	6.0e-112	77.55	ATP-dependent Clp protease proteolytic subunit 4 [Theobroma cacao]	[more]
gi\|823151327\|ref\|XP_012475491.1\|	7.9e-112	76.87	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Goss...	[more]
gi\|728849303\|gb\|KHG28746.1\|	4.3e-110	75.85	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic -like protein [G...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Molecular Function**
Term	Definition
GO:0004252	serine-type endopeptidase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR023562	ClpP/TepA
IPR001907	ClpP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0048510	regulation of timing of transition from vegetative to reproductive phase
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009840	chloroplastic endopeptidase Clp complex
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0004252	serine-type endopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G011300.1	Lsi07G011300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 152..169 score: 2.9E-41coord: 173..192 score: 2.9E-41coord: 121..141 score: 2.9E-41coord: 81..96 score: 2.9E-41coord: 230..249 score: 2.9
IPR001907	ATP-dependent Clp protease proteolytic subunit	HAMAP	MF_00444	ClpP	coord: 66..255 score: 36
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 8..294 score: 8.5E
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 80..254 score: 2.9
None	No IPR available	PANTHER	PTHR10381:SF24	SUBFAMILY NOT NAMED	coord: 8..294 score: 8.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G011300	Csa3G005040	Cucumber (Chinese Long) v2	culsiB228
Lsi07G011300	CSPI03G01000	Wild cucumber (PI 183967)	cpilsiB227
Lsi07G011300	Cucsa.322370	Cucumber (Gy14) v1	cgylsiB530
Lsi07G011300	CmaCh16G012180	Cucurbita maxima (Rimu)	cmalsiB324
Lsi07G011300	CmaCh06G006000	Cucurbita maxima (Rimu)	cmalsiB772
Lsi07G011300	CmoCh06G006060	Cucurbita moschata (Rifu)	cmolsiB763
Lsi07G011300	CmoCh16G012620	Cucurbita moschata (Rifu)	cmolsiB313
Lsi07G011300	Cla008866	Watermelon (97103) v1	lsiwmB429
Lsi07G011300	MELO3C013793	Melon (DHL92) v3.5.1	lsimeB446
Lsi07G011300	ClCG10G001000	Watermelon (Charleston Gray)	lsiwcgB389
Lsi07G011300	MELO3C013793.2	Melon (DHL92) v3.6.1	lsimedB462
Lsi07G011300	Cla97C10G185620	Watermelon (97103) v2	lsiwmbB395
Lsi07G011300	BhiUN179G3	Wax gourd	lsiwgoB575
Lsi07G011300	Cp4.1LG08g09080	Cucurbita pepo (Zucchini)	cpelsiB725
Lsi07G011300	Cp4.1LG14g10100	Cucurbita pepo (Zucchini)	cpelsiB183
Lsi07G011300	CsGy3G000950	Cucumber (Gy14) v2	cgyblsiB217
Lsi07G011300	Carg16286	Silver-seed gourd	carlsiB621
Lsi07G011300	Carg23564	Silver-seed gourd	carlsiB958
Lsi07G011300	CsaV3_3G001040	Cucumber (Chinese Long) v3	cuclsiB250

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None