Carg16286 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16286
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ATP-dependent Clp protease proteolytic subunit
Location	Cucurbita_argyrosperma_scaffold_077 : 523433 .. 527226 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTTCTTTCACGGTGTTCTACTCTTGTTCCTCACGCCTCCTCTCTCAGTCTTCCGAATTCTCATGGAAAATCTTCGGTTTTCTATCCCAAACGCAAATCCAGCCTCTCATTTCCTTCGTCTTCATCAGTCCTCAAAGCAACCGCTCTTAAATCCTCCAGAACCCTAGCTCCGCCGTGCTCTGTCCTTATGACGACTCCACAGACGCCGGATTCCGCCCGGACTGGCGCCGAGACTGATGCCATGGGACTGCTTCTCAGAGAGAGGATCGTTTTCTTGGGGAACAACATTGATGACTTTGTGGCCGATGCTATTATCAGCCAGCTCTTACTCTTGGATGCTCAGGATTCTACTAAGGATATCAGACTCTTCATTAATTCCTCCGGCGGCTCTCTGAGGTATGATTTTTTTGTACAGTGTAGTTGGTGAAGATGTGGAATATGAGATTCAGGTTCATTTTCATTCTGCAATTCGAACAAAATATTCATAATATATAGCAATACTCGTGTAATGTAGAGTGAGTTATCATTAGAAATGAATGATGAAAATAATTTGAAACAAGCAAGAACCGATTGTTTGGGAGTTAGTTTTCCTTGTTACATGGAACTGAGCTGGTCCTCTTATTTCCTTAGGTGGCTTGGTTGTTGGTAATCTGAGAACTAGAAACACCGTTCTCCTCTCAAAGTGGATGTGCTATGTTCATATTCTTGTGTGAAAAGAACGCCCTTAGAAGAGGCTTAATCAAGAGTCAAATTGGGATCGGCAACCTTTGGAGAAACTTAGATCCTAGAATTGACATTGGTAAAACAAAAGATTTCTTTGATCATATTGTTTTCTTGAAGAATGGCAATGGTCTGAGTCATTAATTTTGGGCAAACGCCTGGCTCGATCCTTCTCGTCTTAGCCACATTTTCCAAATACCTTCTCTATTTCGAATGCTGAAGACTTTCTTATAAGAGATTTTTGGAATGGGGCAGTCTAAACACGGGATTTTCAGCTCAGAAGGGGCCCTTGTGATAGAGAACCAGAAGTATGGTTGATCCTCATTCAAAAGATGAAAAGCAGCCATCTAAATCTTAGTAAGGACAAATTTTGTGGGAAGTTTTGAGATATTTGGCTTGTTTCCTTGCAAATCTGCCGCTCTCCAGCCGATCAGTAGAGAAGGCAGGTTGGATAAACCCTATTTTCTCTTATTTGGAAAGTAAAAGACTTTGTTCTTCCTTTGGGCCATGGCTTACAAAAGTCCAAACACTTGTGATTTGGATTCGAAAGATGAAACTTTCCATGGCTTTATATAGCAATATATTGCACAAAAGATTTGCATGTGAAGGAACCCCATTTCCTATAAGGACCAATTTCCCAAATCATACTCTTTTGGGAAAAGGGCTAACACTTTTCCTAAGAGACGCACGCTGGCAAGATCAGAATTCCTTTTCAACAATTAAACATTCAGGTTTCTTGTTCTTTCCCTATGACATTTAGTGGCTGATGATAAAGTGTAGAGGTGGTGGAAGACTATACCAAAGTTTCCCTAATTACTAAAGTATGGCCGTGAAGCATCTATAATCAGTCTCTCCCTTTTCCTTTGTCGTACATTTTGAATGACTTGCTAGGAGTTGTGAAAAAGAGTTGAGAAGTAGGAGAGTTTAAGCATCTTAACACACCGTTCGGAATTGTGCGTTTACAAAACATCTATATGCTATTATTCTAATTGTATCAAGTTTTACTTTGAGCTAGATAAAACTCGGTGCTACACGAGTACAGATTTATCTTGAAATCAATTAATATGTGTGTGTGTGTATGCATATATTGATGCAACCAATCACTTACAACTAGTTTATGCATTGGAGTCAGAACTGAATAGTTCTTTTCAAACTTCAATGGAGAAATTTTGCCTCCTTTAGATTTTTCCTTTCTTTGGTGAGGGGATATGCCTCTTGGGCCACCACTGGGGAAATTTTGATGTGCTTGGGTCTGTGTCTAGAGATGAATGTATTCGTCTACTCTACTTTTCAACATGAATGGGAAAATCAACAAACTATTGGAACACATACATATCTCCCTGATTGTTTATTTAATTTCTGGTTTATTCTCGTTTCCATGATTTGCAGGGTCTTTTTGTACCTTGGGAAATCTTAGAGTAACTTAGTTTATATTGGCTTACAAATAACCTTTTCATGATCTTTTCTCCGCATCTTTGATTCACAACTAATTTTAATACGGTAAACCTGTCAACCACCAAATCATCGTTTTTCAAAATGTATATCGGTGTGTAAATACATAAGGATGCTCATGAGAGGCGTCAGCAGAAGAAACTATGTACTCTGCCTGGGTCCAGTTCATTTGTCAGCAAAGGTTATGTTTTAAGTTCCACATCGAGTTATCCTCATTTTGATTAAGAAACACACCTTCCAACTTCGTACTAATCCACATATATCCCAAGTTTGCGGTGTCTTCTTTCAACCAATCGCTGATTACCTCTCTTTTGTACAAGCAATGGAGAATAGATTTTATACAACATTTGACTCAGATCCCCACATCGATTGGGGAGGAGAACGAAACATTCTATGTAAGGGTGTGGAAACCTCTCCCTAACAGACGCGTTTTAGAAACCTTGAGGGGAAGCCCGAAAGGGAAAACCCAAAGAGGACAGTATCTGCTAGCAAGGGGCTTGAACTATTACAAATGGTATTAGAGCCAGACATCGGGCAATGTACAAGCAATGACGATGGGCCCTGAAGGGAGGTGGACACAAGACGGTGTGCCAGCAAGGACGCCCCAAAGGGGGTGGATTGGGGGTCCCACATCAGTTGGAGAAGGGAACGAGTGCCAGCAAGGATGCTGGGCCCCGAAGGGGGGTGGATTGTGAAATCCCACATCGGTTGGGGAGAAGAACGAAGTATTCTTTATAAGGGTGTGGAAACCTCTCCCGAAAGGAAAATCCGAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGGCTATTACAAAACTAGTCATCTCCTAAATTAGACTAAGGGCATAAAGTAGTTTTTTTTTCCCTTGTCTCCCAGGACTTAAGATTTTAGAAGTGGTAGTGTCATCTTTATAAGTATACGAATTCTCTTGACATTATTCAATCACATGCTCGAGATATCAACTGAATAGGCTTTTTAATATATACTTCTGTTTTCCTTCTTCTGTCTTGGGAATTTAGGCTGGGAGGACGTTCAGCTTTCAATGTGACTGCTGGGAATTTAGGTTAATATTTGTTGTTTGGTTGCTGTTCATTAACCGACTGATTCTGTCTACTAATGTTGTTTTGATTAGTGCTACAATGGCTATCATCGACGTCTTACAGCTTGTGAGAGCTGATGTCTCCACAATTGCACTGGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGCGGTGGCACTAAAGGAAAGCGTTTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGCCAAGCAATAGATGTCGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATAATCAGAATTATCTCCAACTACACTGGCCATCCATTTGAGAAGGTCCAAAAAGATATCGATCGGGATCGTTATATGTCGCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAAGACACCATTATACCTCTCATGCAACTGCCAGAAAGAGTGAAGGCAACGTTAAATTATGAAGAAATTAGTAAAGATCCCAGAAAATTCTTGACACCAGACGTCCCCGATGACGAGATATACTAG

mRNA sequence

ATGGAGCTTCTTTCACGGTGTTCTACTCTTGTTCCTCACGCCTCCTCTCTCAGTCTTCCGAATTCTCATGGAAAATCTTCGGTTTTCTATCCCAAACGCAAATCCAGCCTCTCATTTCCTTCGTCTTCATCAGTCCTCAAAGCAACCGCTCTTAAATCCTCCAGAACCCTAGCTCCGCCGTGCTCTGTCCTTATGACGACTCCACAGACGCCGGATTCCGCCCGGACTGGCGCCGAGACTGATGCCATGGGACTGCTTCTCAGAGAGAGGATCGTTTTCTTGGGGAACAACATTGATGACTTTGTGGCCGATGCTATTATCAGCCAGCTCTTACTCTTGGATGCTCAGGATTCTACTAAGGATATCAGACTCTTCATTAATTCCTCCGGCGGCTCTCTGAGTGCTACAATGGCTATCATCGACGTCTTACAGCTTGTGAGAGCTGATGTCTCCACAATTGCACTGGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGCGGTGGCACTAAAGGAAAGCGTTTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGCCAAGCAATAGATGTCGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATAATCAGAATTATCTCCAACTACACTGGCCATCCATTTGAGAAGGTCCAAAAAGATATCGATCGGGATCGTTATATGTCGCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAAGACACCATTATACCTCTCATGCAACTGCCAGAAAGAGTGAAGGCAACGTTAAATTATGAAGAAATTAGTAAAGATCCCAGAAAATTCTTGACACCAGACGTCCCCGATGACGAGATATACTAG

Coding sequence (CDS)

ATGGAGCTTCTTTCACGGTGTTCTACTCTTGTTCCTCACGCCTCCTCTCTCAGTCTTCCGAATTCTCATGGAAAATCTTCGGTTTTCTATCCCAAACGCAAATCCAGCCTCTCATTTCCTTCGTCTTCATCAGTCCTCAAAGCAACCGCTCTTAAATCCTCCAGAACCCTAGCTCCGCCGTGCTCTGTCCTTATGACGACTCCACAGACGCCGGATTCCGCCCGGACTGGCGCCGAGACTGATGCCATGGGACTGCTTCTCAGAGAGAGGATCGTTTTCTTGGGGAACAACATTGATGACTTTGTGGCCGATGCTATTATCAGCCAGCTCTTACTCTTGGATGCTCAGGATTCTACTAAGGATATCAGACTCTTCATTAATTCCTCCGGCGGCTCTCTGAGTGCTACAATGGCTATCATCGACGTCTTACAGCTTGTGAGAGCTGATGTCTCCACAATTGCACTGGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGCGGTGGCACTAAAGGAAAGCGTTTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGCCAAGCAATAGATGTCGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATAATCAGAATTATCTCCAACTACACTGGCCATCCATTTGAGAAGGTCCAAAAAGATATCGATCGGGATCGTTATATGTCGCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAAGACACCATTATACCTCTCATGCAACTGCCAGAAAGAGTGAAGGCAACGTTAAATTATGAAGAAATTAGTAAAGATCCCAGAAAATTCTTGACACCAGACGTCCCCGATGACGAGATATACTAG

Protein sequence

MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATALKSSRTLAPPCSVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY

Homology

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BLAST of Carg16286 vs. NCBI nr
Match: XP_022937184.1 (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucurbita moschata])

HSP 1 Score: 551.6 bits (1420), Expect = 1.6e-153
Identity = 291/294 (98.98%), Postives = 292/294 (99.32%), Query Frame = 0


Query: 1   MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATALKSSRTLAPP 60
           MELLSRCSTLVPHAS+LSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATALK SRTLAPP
Sbjct: 1   MELLSRCSTLVPHASTLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATALKPSRTLAPP 60

Query: 61  CSVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTK 120
           CSVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTK
Sbjct: 61  CSVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA
Sbjct: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGG SGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGTSGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY
Sbjct: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 294

[Close]

BLAST of Carg16286 vs. NCBI nr
Match: XP_023540498.1 (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 543.1 bits (1398), Expect = 5.8e-151
Identity = 286/294 (97.28%), Postives = 289/294 (98.30%), Query Frame = 0


Query: 1   MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATALKSSRTLAPP 60
           MELLSRCSTLVPHASSL LPN HGKSSVFYPK KSSLSFPSSSSVLKATALK SRTLAPP
Sbjct: 1   MELLSRCSTLVPHASSLGLPNFHGKSSVFYPKCKSSLSFPSSSSVLKATALKPSRTLAPP 60

Query: 61  CSVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTK 120
           CSVLMT PQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDS+K
Sbjct: 61  CSVLMTNPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSSK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA
Sbjct: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASGQAIDVEIQAREIMHNKNN+IRIISNYTGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPD+PDDEIY
Sbjct: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDIPDDEIY 294

[Close]

BLAST of Carg16286 vs. NCBI nr
Match: XP_023005152.1 (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 538.9 bits (1387), Expect = 1.1e-149
Identity = 284/294 (96.60%), Postives = 288/294 (97.96%), Query Frame = 0


Query: 1   MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATALKSSRTLAPP 60
           MELLSRCSTLVPHASSL  PN HGKSSVFYPKRKSSLSFPSSSSVLKATALK  R LAPP
Sbjct: 1   MELLSRCSTLVPHASSLGHPNFHGKSSVFYPKRKSSLSFPSSSSVLKATALKPLRALAPP 60

Query: 61  CSVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTK 120
           CSVLMTTPQTPDSAR+GAETDAMGLLLRERIVFLGNNIDDF+ADAIISQLLLLDAQDS+K
Sbjct: 61  CSVLMTTPQTPDSARSGAETDAMGLLLRERIVFLGNNIDDFLADAIISQLLLLDAQDSSK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA
Sbjct: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASGQAIDVEIQAREIMHNKNN+IRIISNYTGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY
Sbjct: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 294

[Close]

BLAST of Carg16286 vs. NCBI nr
Match: XP_022145352.1 (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Momordica charantia])

HSP 1 Score: 506.1 bits (1302), Expect = 7.8e-140
Identity = 267/294 (90.82%), Postives = 277/294 (94.22%), Query Frame = 0


Query: 1   MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATALKSSRTLAPP 60
           MELLSRCSTL+PHASSLSLPNSH K S FYPK KSSLSFPS+ SVLKATALK SRTLA P
Sbjct: 1   MELLSRCSTLIPHASSLSLPNSHPKPSNFYPKLKSSLSFPSACSVLKATALKPSRTLASP 60

Query: 61  CSVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTK 120
           CSVLMT PQTPD AR GAETDAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDAQDSTK
Sbjct: 61  CSVLMTAPQTPDVARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINS GGSLSATMAI DV+QLVRADVSTI LGIAASTASIILGGGTKGKR AMPNA
Sbjct: 121 DIRLFINSPGGSLSATMAIYDVVQLVRADVSTIGLGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASGQAIDVEIQAREIMHNKNN+ RIIS +TGHPF+KVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFDKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYGLIDGVIDKD+IIPLM +PERVKA+LNYEEISKDPRKFLTPDVPDDEIY
Sbjct: 241 EAVEYGLIDGVIDKDSIIPLMPVPERVKASLNYEEISKDPRKFLTPDVPDDEIY 294

[Close]

BLAST of Carg16286 vs. NCBI nr
Match: XP_008448589.1 (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucumis melo])

HSP 1 Score: 498.4 bits (1282), Expect = 1.6e-137
Identity = 262/294 (89.12%), Postives = 278/294 (94.56%), Query Frame = 0


Query: 1   MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATALKSSRTLAPP 60
           MELLSRCSTL+P ASSL LPNSHGK S F+PK KS+LSFPS+SSVLK TALK SRTL PP
Sbjct: 1   MELLSRCSTLIPQASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  CSVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTK 120
           CSV MT PQTPD++R GAETDAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDAQDSTK
Sbjct: 61  CSV-MTAPQTPDASRRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINS+GGSLSATMAI DV+QLVRADVSTIALGIAASTASIILGGGTKGKR AMPNA
Sbjct: 121 DIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASGQAIDVEIQAREIMHNKNN+ RIIS +TGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYGLIDGVID+D+IIPL+ +PERVKATLNYEE+SKDPRKFLTPDVPDDEIY
Sbjct: 241 EAVEYGLIDGVIDRDSIIPLVPVPERVKATLNYEEMSKDPRKFLTPDVPDDEIY 293

[Close]

BLAST of Carg16286 vs. TAIR10
Match: AT5G45390.1 (CLP protease P4)

HSP 1 Score: 353.6 bits (906), Expect = 1.2e-97
Identity = 182/226 (80.53%), Postives = 202/226 (89.38%), Query Frame = 0


Query: 69  QTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTKDIRLFINS 128
           QT +SA  GAE+D MGLLLRERIVFLG++IDDFVADAI+SQLLLLDA+D  KDI+LFINS
Sbjct: 67  QTQESAIRGAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINS 126

Query: 129 SGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPL 188
            GGSLSATMAI DV+QLVRADVSTIALGIAASTASIILG GTKGKRFAMPN RIM+HQPL
Sbjct: 127 PGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPL 186

Query: 189 GGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLI 248
           GGASGQAIDVEIQA+E+MHNKNN+  II+  T   FE+V KDIDRDRYMSPIEAVEYGLI
Sbjct: 187 GGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLI 246

Query: 249 DGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           DGVID D+IIPL  +P+RVK  +NYEEISKDP KFLTP++PDDEIY
Sbjct: 247 DGVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIPDDEIY 292

[Close]

BLAST of Carg16286 vs. TAIR10
Match: AT1G66670.1 (CLP protease proteolytic subunit 3)

HSP 1 Score: 191.8 bits (486), Expect = 5.9e-49
Identity = 110/254 (43.31%), Postives = 162/254 (63.78%), Query Frame = 0


Query: 16  SLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATA----LKSSRTLA-PPCSVLM----- 75
           SL L +S   + +       +L+FP  +  +  T+    ++SS +L+ PP   L      
Sbjct: 4   SLRLASSSTSNPICLLNPGKNLNFPIRNHRIPKTSKPFCVRSSMSLSKPPRQTLSSNWDV 63

Query: 76  ------TTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDST 135
                 +  Q+P    +  E D   +LLR+RIVFLG+ +DD  AD +ISQLLLLDA+DS 
Sbjct: 64  SSFSIDSVAQSPSRLPSFEELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSE 123

Query: 136 KDIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPN 195
           +DI LFINS GGS++A M I D ++  +ADVST+ LG+AAS  + +L  G+KGKR+ MPN
Sbjct: 124 RDITLFINSPGGSITAGMGIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPN 183

Query: 196 ARIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSP 254
           +++M+HQPLG A G+A ++ I+ RE+M++K  + +I S  TG P  +++ D DRD +++P
Sbjct: 184 SKVMIHQPLGTAGGKATEMSIRIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNP 243

[Close]

BLAST of Carg16286 vs. TAIR10
Match: AT1G02560.1 (nuclear encoded CLP protease 5)

HSP 1 Score: 179.1 bits (453), Expect = 4.0e-45
Identity = 87/167 (52.10%), Postives = 124/167 (74.25%), Query Frame = 0


Query: 86  LLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGSLSATMAIIDVLQL 145
           L + RI+  G  +DD +A+ I++QLL LDA D TKDI +++NS GGS++A MAI D ++ 
Sbjct: 119 LFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRH 178

Query: 146 VRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGASGQAIDVEIQAREI 205
           +R DVST+ +G+AAS  + +L  GTKGKR+++PN+RIM+HQPLGGA G   D++IQA E+
Sbjct: 179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM 238

Query: 206 MHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVI 253
           +H+K N+   ++ +TG   EK+ +D DRD +MS  EA EYGLIDGVI
Sbjct: 239 LHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 285

[Close]

BLAST of Carg16286 vs. TAIR10
Match: AT1G11750.2 (CLP protease proteolytic subunit 6)

HSP 1 Score: 154.8 bits (390), Expect = 8.0e-38
Identity = 77/188 (40.96%), Postives = 115/188 (61.17%), Query Frame = 0


Query: 68  PQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTKDIRLFIN 127
           P  P     G   D   +L R RI+F+G  I+  VA  +ISQL+ L + D   DI +++N
Sbjct: 101 PVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDILMYLN 160

Query: 128 SSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQP 187
             GGS  + +AI D +  ++  V T+A G+AAS  +++L GG KG R+AMPN R+M+HQP
Sbjct: 161 CPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVMIHQP 220

Query: 188 LGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGL 247
             G  G   DV  Q  E +  +  I R+ + +TG P EKVQ+  +RDR++S  EA+E+GL
Sbjct: 221 QTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEALEFGL 280

Query: 248 IDGVIDKD 256
           IDG+++ +
Sbjct: 281 IDGLLETE 288

[Close]

BLAST of Carg16286 vs. TAIR10
Match: AT5G23140.1 (nuclear-encoded CLP protease P7)

HSP 1 Score: 145.2 bits (365), Expect = 6.3e-35
Identity = 78/215 (36.28%), Postives = 132/215 (61.40%), Query Frame = 0


Query: 41  SSSSVLKATALKSSRTLAPPCSVLMTTPQTPDSARTGAET-DAMGLLLRERIVFLGNNID 100
           S + +L +T    + ++A         P   + +  G    D    LL+ERI+ +   I+
Sbjct: 7   SGAKMLSSTPSSMATSIATGRRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPIN 66

Query: 101 DFVADAIISQLLLLDAQDSTKDIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAA 160
           D  +  +++QLL L++++ +K I +++NS GG ++A +AI D +Q +R+ +STI LG AA
Sbjct: 67  DDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPISTICLGQAA 126

Query: 161 STASIILGGGTKGKRFAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNY 220
           S AS++L  G KG+R ++PNA +M+HQP GG SGQA D+ I  ++I+   + +  +   +
Sbjct: 127 SMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAKDITIHTKQIVRVWDALNELYVKH 186

Query: 221 TGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVIDK 255
           TG P + V  ++DRD +M+P EA  +G+ID VID+
Sbjct: 187 TGQPLDVVANNMDRDHFMTPEEAKAFGIIDEVIDE 221

[Close]

BLAST of Carg16286 vs. Swiss-Prot
Match: sp|Q94B60|CLPP4_ARATH (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPP4 PE=1 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 2.1e-96
Identity = 182/226 (80.53%), Postives = 202/226 (89.38%), Query Frame = 0


Query: 69  QTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTKDIRLFINS 128
           QT +SA  GAE+D MGLLLRERIVFLG++IDDFVADAI+SQLLLLDA+D  KDI+LFINS
Sbjct: 67  QTQESAIRGAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINS 126

Query: 129 SGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPL 188
            GGSLSATMAI DV+QLVRADVSTIALGIAASTASIILG GTKGKRFAMPN RIM+HQPL
Sbjct: 127 PGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPL 186

Query: 189 GGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLI 248
           GGASGQAIDVEIQA+E+MHNKNN+  II+  T   FE+V KDIDRDRYMSPIEAVEYGLI
Sbjct: 187 GGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLI 246

Query: 249 DGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           DGVID D+IIPL  +P+RVK  +NYEEISKDP KFLTP++PDDEIY
Sbjct: 247 DGVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIPDDEIY 292

[Close]

BLAST of Carg16286 vs. Swiss-Prot
Match: sp|Q3ANI8|CLPP1_SYNSC (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9605) OX=110662 GN=clpP1 PE=3 SV=2)

HSP 1 Score: 207.2 bits (526), Expect = 2.5e-52
Identity = 100/181 (55.25%), Postives = 136/181 (75.14%), Query Frame = 0


Query: 73  SARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGS 132
           S R     D    LLRERI+FLG  +DD VADA+++Q+L L+A+D  KDI+++INS GGS
Sbjct: 16  SGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYINSPGGS 75

Query: 133 LSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGAS 192
           ++A +AI D +Q V  DV TI  G+AAS  + +L GGTKGKR A+PNARIM+HQPLGGA 
Sbjct: 76  VTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQ 135

Query: 193 GQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVI 252
           GQA+D+EIQA+EI++ K  +  +++ +TG P +K+ +D DRD ++SP EAVEYGLID V+
Sbjct: 136 GQAVDIEIQAKEILYLKETLNGLMAEHTGQPLDKISEDTDRDYFLSPAEAVEYGLIDRVV 195

Query: 253 D 254
           D
Sbjct: 196 D 196

[Close]

BLAST of Carg16286 vs. Swiss-Prot
Match: sp|Q3B0U1|CLPP2_SYNS9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpP2 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 5.5e-52
Identity = 99/181 (54.70%), Postives = 135/181 (74.59%), Query Frame = 0


Query: 73  SARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGS 132
           S R     D    LLRERI+FLG  +DD VADA+++Q+L L+A+D  KDI++++NS GGS
Sbjct: 16  SGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYVNSPGGS 75

Query: 133 LSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGAS 192
           ++A +AI D +Q V  DV TI  G+AAS  + +L GGTKGKR A+PNARIM+HQPLGGA 
Sbjct: 76  VTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQ 135

Query: 193 GQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVI 252
           GQA+D+EIQA+EI+  K  +  +++ +TG P +K+ +D DRD ++SP EAVEYGLID V+
Sbjct: 136 GQAVDIEIQAKEILFLKETLNGLLAEHTGQPLDKISEDTDRDYFLSPAEAVEYGLIDRVV 195

Query: 253 D 254
           D
Sbjct: 196 D 196

[Close]

BLAST of Carg16286 vs. Swiss-Prot
Match: sp|O34125|CLPP2_SYNE7 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN=clpP2 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.2e-51
Identity = 102/185 (55.14%), Postives = 138/185 (74.59%), Query Frame = 0


Query: 73  SARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGS 132
           S R     D    LLRERIVFLG  +DD VAD+I++QLL L+A+D  KDI+L+INS GGS
Sbjct: 45  SGRGERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGS 104

Query: 133 LSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGAS 192
           ++A MAI D +Q V  DV+TI  G+AAS  + +L GG +GKR A+P+ARIM+HQPLGGA 
Sbjct: 105 VTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQ 164

Query: 193 GQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVI 252
           GQA+D+EIQAREI+++K+ +  +++ +TG P EK++ D DRD +MSP EA  YGLID V+
Sbjct: 165 GQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 224

Query: 253 DKDTI 258
            + T+
Sbjct: 225 TRPTM 229

[Close]

BLAST of Carg16286 vs. Swiss-Prot
Match: sp|Q5N1P6|CLPP3_SYNP6 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpP3 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.2e-51
Identity = 102/185 (55.14%), Postives = 138/185 (74.59%), Query Frame = 0


Query: 73  SARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGS 132
           S R     D    LLRERIVFLG  +DD VAD+I++QLL L+A+D  KDI+L+INS GGS
Sbjct: 45  SGRGERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGS 104

Query: 133 LSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGAS 192
           ++A MAI D +Q V  DV+TI  G+AAS  + +L GG +GKR A+P+ARIM+HQPLGGA 
Sbjct: 105 VTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQ 164

Query: 193 GQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVI 252
           GQA+D+EIQAREI+++K+ +  +++ +TG P EK++ D DRD +MSP EA  YGLID V+
Sbjct: 165 GQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 224

Query: 253 DKDTI 258
            + T+
Sbjct: 225 TRPTM 229

[Close]

BLAST of Carg16286 vs. TrEMBL
Match: tr|A0A1S3BJF4|A0A1S3BJF4_CUCME (ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103490719 PE=3 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 1.1e-137
Identity = 262/294 (89.12%), Postives = 278/294 (94.56%), Query Frame = 0


Query: 1   MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATALKSSRTLAPP 60
           MELLSRCSTL+P ASSL LPNSHGK S F+PK KS+LSFPS+SSVLK TALK SRTL PP
Sbjct: 1   MELLSRCSTLIPQASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  CSVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTK 120
           CSV MT PQTPD++R GAETDAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDAQDSTK
Sbjct: 61  CSV-MTAPQTPDASRRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINS+GGSLSATMAI DV+QLVRADVSTIALGIAASTASIILGGGTKGKR AMPNA
Sbjct: 121 DIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASGQAIDVEIQAREIMHNKNN+ RIIS +TGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYGLIDGVID+D+IIPL+ +PERVKATLNYEE+SKDPRKFLTPDVPDDEIY
Sbjct: 241 EAVEYGLIDGVIDRDSIIPLVPVPERVKATLNYEEMSKDPRKFLTPDVPDDEIY 293

[Close]

BLAST of Carg16286 vs. TrEMBL
Match: tr|A0A0A0L3S1|A0A0A0L3S1_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus OX=3659 GN=Csa_3G005040 PE=3 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 3.4e-131
Identity = 250/294 (85.03%), Postives = 270/294 (91.84%), Query Frame = 0


Query: 1   MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATALKSSRTLAPP 60
           MELLSRCSTL PHASSL LPNSHGK S F+PK KS+LSFPS+SSVLK TALK SRTL PP
Sbjct: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  CSVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTK 120
           CSV MT PQTPD+AR GAETDAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDA+DSTK
Sbjct: 61  CSV-MTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINS+GGSLS+TMAI DV+QLVRADVSTIALGIAASTASIILGGGTKGKR AMPNA
Sbjct: 121 DIRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASG A+DVEIQAREIM NK+N+IRIIS +TGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYG IDGVID+D+IIPLM +P++VK   NY E+ KDP KFLTPDVPDDEI+
Sbjct: 241 EAVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIF 293

[Close]

BLAST of Carg16286 vs. TrEMBL
Match: tr|A0A0D2R6I8|A0A0D2R6I8_GOSRA (ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii OX=29730 GN=B456_004G175000 PE=3 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 4.7e-109
Identity = 225/298 (75.50%), Postives = 245/298 (82.21%), Query Frame = 0


Query: 1   MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKA---TALKSSRTL 60
           M LLS  S+L P  SSL L           PK K SL+FP+ S V  A   T L SS  L
Sbjct: 1   MGLLSLSSSLTPSFSSLHLK----------PKHKLSLTFPNPSFVCSAPTSTPLSSSLKL 60

Query: 61  APPC-SVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ 120
            P   S+ ++ PQ+P +A  GAE DAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ
Sbjct: 61  KPTANSLKLSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ 120

Query: 121 DSTKDIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFA 180
           D TKDIRLFINS GGSLSATMAI DV+QLVRADVST+ +GIAASTASIILGGGTKGKRFA
Sbjct: 121 DPTKDIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFA 180

Query: 181 MPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRY 240
           MPN RIM+HQPLGGASGQAIDVEIQAREIMHNKNN+ RIIS  TG PFE+V KDIDRDRY
Sbjct: 181 MPNTRIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRY 240

Query: 241 MSPIEAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           MSPIEAVEYG+IDGVID+D+IIPL  +PERVKA+LNYEEISKDPRKFLTPD+PDDEIY
Sbjct: 241 MSPIEAVEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of Carg16286 vs. TrEMBL
Match: tr|A0A1U8IV12|A0A1U8IV12_GOSHI (ATP-dependent Clp protease proteolytic subunit OS=Gossypium hirsutum OX=3635 GN=LOC107900718 PE=3 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 8.0e-109
Identity = 225/298 (75.50%), Postives = 246/298 (82.55%), Query Frame = 0


Query: 1   MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKA---TALKSSRTL 60
           M LLS  S+L P     S P+ H K     PK K SL+FP+ S V  A   T L SS  L
Sbjct: 1   MGLLSLSSSLTP-----SFPSLHLK-----PKHKLSLTFPNPSFVCSAPTSTPLSSSLKL 60

Query: 61  APPC-SVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ 120
            P   S+ ++ PQ+P +A  GAE DAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ
Sbjct: 61  KPTANSLKLSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ 120

Query: 121 DSTKDIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFA 180
           D TKDIRLFINS GGSLSATMAI DV+QLVRADVST+ +GIAASTASIILGGGTKGKRFA
Sbjct: 121 DPTKDIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFA 180

Query: 181 MPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRY 240
           MPN RIM+HQPLGGASGQAIDVEIQAREIMHNKNN+ RIIS  TG PFE+V KDIDRDRY
Sbjct: 181 MPNTRIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRY 240

Query: 241 MSPIEAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           MSPIEAVEYG+IDGVID+D+IIPL  +PERVKA+LNYEEISKDPRKFLTPD+PDDEIY
Sbjct: 241 MSPIEAVEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of Carg16286 vs. TrEMBL
Match: tr|A0A2P5RSP6|A0A2P5RSP6_GOSBA (ATP-dependent Clp protease proteolytic subunit OS=Gossypium barbadense OX=3634 GN=GOBAR_DD13246 PE=3 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 8.0e-109
Identity = 225/298 (75.50%), Postives = 246/298 (82.55%), Query Frame = 0


Query: 1   MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKA---TALKSSRTL 60
           M LLS  S+L P     S P+ H K     PK K SL+FP+ S V  A   T L SS  L
Sbjct: 1   MGLLSLSSSLTP-----SFPSLHLK-----PKHKLSLTFPNPSFVCSAPTSTPLSSSLKL 60

Query: 61  APPC-SVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ 120
            P   S+ ++ PQ+P +A  GAE DAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ
Sbjct: 61  KPTANSLKLSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ 120

Query: 121 DSTKDIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFA 180
           D TKDIRLFINS GGSLSATMAI DV+QLVRADVST+ +GIAASTASIILGGGTKGKRFA
Sbjct: 121 DPTKDIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFA 180

Query: 181 MPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRY 240
           MPN RIM+HQPLGGASGQAIDVEIQAREIMHNKNN+ RIIS  TG PFE+V KDIDRDRY
Sbjct: 181 MPNTRIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRY 240

Query: 241 MSPIEAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           MSPIEAVEYG+IDGVID+D+IIPL  +PERVKA+LNYEEISKDPRKFLTPD+PDDEIY
Sbjct: 241 MSPIEAVEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

The following BLAST results are available for this feature:

BLAST of Carg16286 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937184.1	1.6e-153	98.98	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucurbita mosch...	[more]
XP_023540498.1	5.8e-151	97.28	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Cucurbita ...	[more]
XP_023005152.1	1.1e-149	96.60	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Cucurbita ...	[more]
XP_022145352.1	7.8e-140	90.82	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Momordica chara...	[more]
XP_008448589.1	1.6e-137	89.12	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucu...	[more]

BLAST of Carg16286 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45390.1	1.2e-97	80.53	CLP protease P4	[more]
AT1G66670.1	5.9e-49	43.31	CLP protease proteolytic subunit 3	[more]
AT1G02560.1	4.0e-45	52.10	nuclear encoded CLP protease 5	[more]
AT1G11750.2	8.0e-38	40.96	CLP protease proteolytic subunit 6	[more]
AT5G23140.1	6.3e-35	36.28	nuclear-encoded CLP protease P7	[more]

BLAST of Carg16286 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94B60\|CLPP4_ARATH	2.1e-96	80.53	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis t...	[more]
sp\|Q3ANI8\|CLPP1_SYNSC	2.5e-52	55.25	ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC...	[more]
sp\|Q3B0U1\|CLPP2_SYNS9	5.5e-52	54.70	ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC...	[more]
sp\|O34125\|CLPP2_SYNE7	1.2e-51	55.14	ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (str...	[more]
sp\|Q5N1P6\|CLPP3_SYNP6	1.2e-51	55.14	ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain AT...	[more]

BLAST of Carg16286 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BJF4\|A0A1S3BJF4_CUCME	1.1e-137	89.12	ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A0A0L3S1\|A0A0A0L3S1_CUCSA	3.4e-131	85.03	ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus OX=3659 GN=Csa...	[more]
tr\|A0A0D2R6I8\|A0A0D2R6I8_GOSRA	4.7e-109	75.50	ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii OX=29730 G...	[more]
tr\|A0A1U8IV12\|A0A1U8IV12_GOSHI	8.0e-109	75.50	ATP-dependent Clp protease proteolytic subunit OS=Gossypium hirsutum OX=3635 GN=...	[more]
tr\|A0A2P5RSP6\|A0A2P5RSP6_GOSBA	8.0e-109	75.50	ATP-dependent Clp protease proteolytic subunit OS=Gossypium barbadense OX=3634 G...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Molecular Function**
Term	Definition
GO:0004252	serine-type endopeptidase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR029045	ClpP/crotonase-like_dom_sf
IPR033135	ClpP_His_AS
IPR023562	ClpP/TepA
IPR001907	ClpP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004252	serine-type endopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16286-RA	Carg16286-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 152..169 score: 50.56 coord: 121..141 score: 51.55 coord: 173..192 score: 58.38 coord: 81..96 score: 46.88 coord: 230..249 score: 56.38
IPR001907	ATP-dependent Clp protease proteolytic subunit	HAMAP	MF_00444	ClpP	coord: 66..255 score: 36.268
IPR001907	ATP-dependent Clp protease proteolytic subunit	CDD	cd07017	S14_ClpP_2	coord: 81..251 e-value: 1.03743E-93 score: 276.63
None	No IPR available	GENE3D	G3DSA:3.90.226.10		coord: 62..257 e-value: 1.6E-64 score: 219.3
None	No IPR available	PANTHER	PTHR10381:SF24	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 4, CHLOROPLASTIC	coord: 23..294
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 80..254 e-value: 1.9E-70 score: 236.4
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 23..294
IPR033135	ClpP, histidine active site	PROSITE	PS00382	CLP_PROTEASE_HIS	coord: 174..187
IPR029045	ClpP/crotonase-like domain superfamily	SUPERFAMILY	SSF52096	ClpP/crotonase	coord: 80..256

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16286	Cla008866	Watermelon (97103) v1	carwmB0678
Carg16286	Csa3G005040	Cucumber (Chinese Long) v2	carcuB0701
Carg16286	MELO3C013793	Melon (DHL92) v3.5.1	carmeB0681
Carg16286	ClCG10G001000	Watermelon (Charleston Gray)	carwcgB0655
Carg16286	CSPI03G01000	Wild cucumber (PI 183967)	carcpiB0713
Carg16286	Cucsa.322370	Cucumber (Gy14) v1	carcgyB0759
Carg16286	CmaCh06G006000	Cucurbita maxima (Rimu)	carcmaB0957
Carg16286	CmaCh16G012180	Cucurbita maxima (Rimu)	carcmaB0956
Carg16286	CmoCh06G006060	Cucurbita moschata (Rifu)	carcmoB0933
Carg16286	CmoCh16G012620	Cucurbita moschata (Rifu)	carcmoB0932
Carg16286	Lsi07G011300	Bottle gourd (USVL1VR-Ls)	carlsiB621
Carg16286	Cp4.1LG14g10100	Cucurbita pepo (Zucchini)	carcpeB0955
Carg16286	Cp4.1LG08g09080	Cucurbita pepo (Zucchini)	carcpeB0957
Carg16286	CsGy3G000950	Cucumber (Gy14) v2	carcgybB0677
Carg16286	MELO3C013793.2	Melon (DHL92) v3.6.1	carmedB0693
Carg16286	CsaV3_3G001040	Cucumber (Chinese Long) v3	carcucB0715
Carg16286	Cla97C10G185620	Watermelon (97103) v2	carwmbB0705
Carg16286	BhiUN179G3	Wax gourd	carwgoB0798

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg16286	Carg23564	Silver-seed gourd	carcarB575

The following block(s) are covering this gene:

None