Carg16286-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16286-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ATP-dependent Clp protease proteolytic subunit
Location	Cucurbita_argyrosperma_scaffold_077 : 523433 .. 527226 (+)
Sequence length	885

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTTCTTTCACGGTGTTCTACTCTTGTTCCTCACGCCTCCTCTCTCAGTCTTCCGAATTCTCATGGAAAATCTTCGGTTTTCTATCCCAAACGCAAATCCAGCCTCTCATTTCCTTCGTCTTCATCAGTCCTCAAAGCAACCGCTCTTAAATCCTCCAGAACCCTAGCTCCGCCGTGCTCTGTCCTTATGACGACTCCACAGACGCCGGATTCCGCCCGGACTGGCGCCGAGACTGATGCCATGGGACTGCTTCTCAGAGAGAGGATCGTTTTCTTGGGGAACAACATTGATGACTTTGTGGCCGATGCTATTATCAGCCAGCTCTTACTCTTGGATGCTCAGGATTCTACTAAGGATATCAGACTCTTCATTAATTCCTCCGGCGGCTCTCTGAGGTATGATTTTTTTGTACAGTGTAGTTGGTGAAGATGTGGAATATGAGATTCAGGTTCATTTTCATTCTGCAATTCGAACAAAATATTCATAATATATAGCAATACTCGTGTAATGTAGAGTGAGTTATCATTAGAAATGAATGATGAAAATAATTTGAAACAAGCAAGAACCGATTGTTTGGGAGTTAGTTTTCCTTGTTACATGGAACTGAGCTGGTCCTCTTATTTCCTTAGGTGGCTTGGTTGTTGGTAATCTGAGAACTAGAAACACCGTTCTCCTCTCAAAGTGGATGTGCTATGTTCATATTCTTGTGTGAAAAGAACGCCCTTAGAAGAGGCTTAATCAAGAGTCAAATTGGGATCGGCAACCTTTGGAGAAACTTAGATCCTAGAATTGACATTGGTAAAACAAAAGATTTCTTTGATCATATTGTTTTCTTGAAGAATGGCAATGGTCTGAGTCATTAATTTTGGGCAAACGCCTGGCTCGATCCTTCTCGTCTTAGCCACATTTTCCAAATACCTTCTCTATTTCGAATGCTGAAGACTTTCTTATAAGAGATTTTTGGAATGGGGCAGTCTAAACACGGGATTTTCAGCTCAGAAGGGGCCCTTGTGATAGAGAACCAGAAGTATGGTTGATCCTCATTCAAAAGATGAAAAGCAGCCATCTAAATCTTAGTAAGGACAAATTTTGTGGGAAGTTTTGAGATATTTGGCTTGTTTCCTTGCAAATCTGCCGCTCTCCAGCCGATCAGTAGAGAAGGCAGGTTGGATAAACCCTATTTTCTCTTATTTGGAAAGTAAAAGACTTTGTTCTTCCTTTGGGCCATGGCTTACAAAAGTCCAAACACTTGTGATTTGGATTCGAAAGATGAAACTTTCCATGGCTTTATATAGCAATATATTGCACAAAAGATTTGCATGTGAAGGAACCCCATTTCCTATAAGGACCAATTTCCCAAATCATACTCTTTTGGGAAAAGGGCTAACACTTTTCCTAAGAGACGCACGCTGGCAAGATCAGAATTCCTTTTCAACAATTAAACATTCAGGTTTCTTGTTCTTTCCCTATGACATTTAGTGGCTGATGATAAAGTGTAGAGGTGGTGGAAGACTATACCAAAGTTTCCCTAATTACTAAAGTATGGCCGTGAAGCATCTATAATCAGTCTCTCCCTTTTCCTTTGTCGTACATTTTGAATGACTTGCTAGGAGTTGTGAAAAAGAGTTGAGAAGTAGGAGAGTTTAAGCATCTTAACACACCGTTCGGAATTGTGCGTTTACAAAACATCTATATGCTATTATTCTAATTGTATCAAGTTTTACTTTGAGCTAGATAAAACTCGGTGCTACACGAGTACAGATTTATCTTGAAATCAATTAATATGTGTGTGTGTGTATGCATATATTGATGCAACCAATCACTTACAACTAGTTTATGCATTGGAGTCAGAACTGAATAGTTCTTTTCAAACTTCAATGGAGAAATTTTGCCTCCTTTAGATTTTTCCTTTCTTTGGTGAGGGGATATGCCTCTTGGGCCACCACTGGGGAAATTTTGATGTGCTTGGGTCTGTGTCTAGAGATGAATGTATTCGTCTACTCTACTTTTCAACATGAATGGGAAAATCAACAAACTATTGGAACACATACATATCTCCCTGATTGTTTATTTAATTTCTGGTTTATTCTCGTTTCCATGATTTGCAGGGTCTTTTTGTACCTTGGGAAATCTTAGAGTAACTTAGTTTATATTGGCTTACAAATAACCTTTTCATGATCTTTTCTCCGCATCTTTGATTCACAACTAATTTTAATACGGTAAACCTGTCAACCACCAAATCATCGTTTTTCAAAATGTATATCGGTGTGTAAATACATAAGGATGCTCATGAGAGGCGTCAGCAGAAGAAACTATGTACTCTGCCTGGGTCCAGTTCATTTGTCAGCAAAGGTTATGTTTTAAGTTCCACATCGAGTTATCCTCATTTTGATTAAGAAACACACCTTCCAACTTCGTACTAATCCACATATATCCCAAGTTTGCGGTGTCTTCTTTCAACCAATCGCTGATTACCTCTCTTTTGTACAAGCAATGGAGAATAGATTTTATACAACATTTGACTCAGATCCCCACATCGATTGGGGAGGAGAACGAAACATTCTATGTAAGGGTGTGGAAACCTCTCCCTAACAGACGCGTTTTAGAAACCTTGAGGGGAAGCCCGAAAGGGAAAACCCAAAGAGGACAGTATCTGCTAGCAAGGGGCTTGAACTATTACAAATGGTATTAGAGCCAGACATCGGGCAATGTACAAGCAATGACGATGGGCCCTGAAGGGAGGTGGACACAAGACGGTGTGCCAGCAAGGACGCCCCAAAGGGGGTGGATTGGGGGTCCCACATCAGTTGGAGAAGGGAACGAGTGCCAGCAAGGATGCTGGGCCCCGAAGGGGGGTGGATTGTGAAATCCCACATCGGTTGGGGAGAAGAACGAAGTATTCTTTATAAGGGTGTGGAAACCTCTCCCGAAAGGAAAATCCGAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGGCTATTACAAAACTAGTCATCTCCTAAATTAGACTAAGGGCATAAAGTAGTTTTTTTTTCCCTTGTCTCCCAGGACTTAAGATTTTAGAAGTGGTAGTGTCATCTTTATAAGTATACGAATTCTCTTGACATTATTCAATCACATGCTCGAGATATCAACTGAATAGGCTTTTTAATATATACTTCTGTTTTCCTTCTTCTGTCTTGGGAATTTAGGCTGGGAGGACGTTCAGCTTTCAATGTGACTGCTGGGAATTTAGGTTAATATTTGTTGTTTGGTTGCTGTTCATTAACCGACTGATTCTGTCTACTAATGTTGTTTTGATTAGTGCTACAATGGCTATCATCGACGTCTTACAGCTTGTGAGAGCTGATGTCTCCACAATTGCACTGGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGCGGTGGCACTAAAGGAAAGCGTTTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGCCAAGCAATAGATGTCGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATAATCAGAATTATCTCCAACTACACTGGCCATCCATTTGAGAAGGTCCAAAAAGATATCGATCGGGATCGTTATATGTCGCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAAGACACCATTATACCTCTCATGCAACTGCCAGAAAGAGTGAAGGCAACGTTAAATTATGAAGAAATTAGTAAAGATCCCAGAAAATTCTTGACACCAGACGTCCCCGATGACGAGATATACTAG

mRNA sequence

ATGGAGCTTCTTTCACGGTGTTCTACTCTTGTTCCTCACGCCTCCTCTCTCAGTCTTCCGAATTCTCATGGAAAATCTTCGGTTTTCTATCCCAAACGCAAATCCAGCCTCTCATTTCCTTCGTCTTCATCAGTCCTCAAAGCAACCGCTCTTAAATCCTCCAGAACCCTAGCTCCGCCGTGCTCTGTCCTTATGACGACTCCACAGACGCCGGATTCCGCCCGGACTGGCGCCGAGACTGATGCCATGGGACTGCTTCTCAGAGAGAGGATCGTTTTCTTGGGGAACAACATTGATGACTTTGTGGCCGATGCTATTATCAGCCAGCTCTTACTCTTGGATGCTCAGGATTCTACTAAGGATATCAGACTCTTCATTAATTCCTCCGGCGGCTCTCTGAGTGCTACAATGGCTATCATCGACGTCTTACAGCTTGTGAGAGCTGATGTCTCCACAATTGCACTGGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGCGGTGGCACTAAAGGAAAGCGTTTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGCCAAGCAATAGATGTCGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATAATCAGAATTATCTCCAACTACACTGGCCATCCATTTGAGAAGGTCCAAAAAGATATCGATCGGGATCGTTATATGTCGCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAAGACACCATTATACCTCTCATGCAACTGCCAGAAAGAGTGAAGGCAACGTTAAATTATGAAGAAATTAGTAAAGATCCCAGAAAATTCTTGACACCAGACGTCCCCGATGACGAGATATACTAG

Coding sequence (CDS)

ATGGAGCTTCTTTCACGGTGTTCTACTCTTGTTCCTCACGCCTCCTCTCTCAGTCTTCCGAATTCTCATGGAAAATCTTCGGTTTTCTATCCCAAACGCAAATCCAGCCTCTCATTTCCTTCGTCTTCATCAGTCCTCAAAGCAACCGCTCTTAAATCCTCCAGAACCCTAGCTCCGCCGTGCTCTGTCCTTATGACGACTCCACAGACGCCGGATTCCGCCCGGACTGGCGCCGAGACTGATGCCATGGGACTGCTTCTCAGAGAGAGGATCGTTTTCTTGGGGAACAACATTGATGACTTTGTGGCCGATGCTATTATCAGCCAGCTCTTACTCTTGGATGCTCAGGATTCTACTAAGGATATCAGACTCTTCATTAATTCCTCCGGCGGCTCTCTGAGTGCTACAATGGCTATCATCGACGTCTTACAGCTTGTGAGAGCTGATGTCTCCACAATTGCACTGGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGCGGTGGCACTAAAGGAAAGCGTTTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGCCAAGCAATAGATGTCGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATAATCAGAATTATCTCCAACTACACTGGCCATCCATTTGAGAAGGTCCAAAAAGATATCGATCGGGATCGTTATATGTCGCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAAGACACCATTATACCTCTCATGCAACTGCCAGAAAGAGTGAAGGCAACGTTAAATTATGAAGAAATTAGTAAAGATCCCAGAAAATTCTTGACACCAGACGTCCCCGATGACGAGATATACTAG

Protein sequence

MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATALKSSRTLAPPCSVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY

Homology

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BLAST of Carg16286-RA vs. NCBI nr
Match: XP_022937184.1 (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucurbita moschata])

HSP 1 Score: 551.6 bits (1420), Expect = 1.6e-153
Identity = 291/294 (98.98%), Postives = 292/294 (99.32%), Query Frame = 0


Query: 1   MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATALKSSRTLAPP 60
           MELLSRCSTLVPHAS+LSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATALK SRTLAPP
Sbjct: 1   MELLSRCSTLVPHASTLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATALKPSRTLAPP 60

Query: 61  CSVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTK 120
           CSVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTK
Sbjct: 61  CSVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA
Sbjct: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGG SGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGTSGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY
Sbjct: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 294

[Close]

BLAST of Carg16286-RA vs. NCBI nr
Match: XP_023540498.1 (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 543.1 bits (1398), Expect = 5.8e-151
Identity = 286/294 (97.28%), Postives = 289/294 (98.30%), Query Frame = 0


Query: 1   MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATALKSSRTLAPP 60
           MELLSRCSTLVPHASSL LPN HGKSSVFYPK KSSLSFPSSSSVLKATALK SRTLAPP
Sbjct: 1   MELLSRCSTLVPHASSLGLPNFHGKSSVFYPKCKSSLSFPSSSSVLKATALKPSRTLAPP 60

Query: 61  CSVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTK 120
           CSVLMT PQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDS+K
Sbjct: 61  CSVLMTNPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSSK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA
Sbjct: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASGQAIDVEIQAREIMHNKNN+IRIISNYTGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPD+PDDEIY
Sbjct: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDIPDDEIY 294

[Close]

BLAST of Carg16286-RA vs. NCBI nr
Match: XP_023005152.1 (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 538.9 bits (1387), Expect = 1.1e-149
Identity = 284/294 (96.60%), Postives = 288/294 (97.96%), Query Frame = 0


Query: 1   MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATALKSSRTLAPP 60
           MELLSRCSTLVPHASSL  PN HGKSSVFYPKRKSSLSFPSSSSVLKATALK  R LAPP
Sbjct: 1   MELLSRCSTLVPHASSLGHPNFHGKSSVFYPKRKSSLSFPSSSSVLKATALKPLRALAPP 60

Query: 61  CSVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTK 120
           CSVLMTTPQTPDSAR+GAETDAMGLLLRERIVFLGNNIDDF+ADAIISQLLLLDAQDS+K
Sbjct: 61  CSVLMTTPQTPDSARSGAETDAMGLLLRERIVFLGNNIDDFLADAIISQLLLLDAQDSSK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA
Sbjct: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASGQAIDVEIQAREIMHNKNN+IRIISNYTGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY
Sbjct: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 294

[Close]

BLAST of Carg16286-RA vs. NCBI nr
Match: XP_022145352.1 (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Momordica charantia])

HSP 1 Score: 506.1 bits (1302), Expect = 7.8e-140
Identity = 267/294 (90.82%), Postives = 277/294 (94.22%), Query Frame = 0


Query: 1   MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATALKSSRTLAPP 60
           MELLSRCSTL+PHASSLSLPNSH K S FYPK KSSLSFPS+ SVLKATALK SRTLA P
Sbjct: 1   MELLSRCSTLIPHASSLSLPNSHPKPSNFYPKLKSSLSFPSACSVLKATALKPSRTLASP 60

Query: 61  CSVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTK 120
           CSVLMT PQTPD AR GAETDAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDAQDSTK
Sbjct: 61  CSVLMTAPQTPDVARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINS GGSLSATMAI DV+QLVRADVSTI LGIAASTASIILGGGTKGKR AMPNA
Sbjct: 121 DIRLFINSPGGSLSATMAIYDVVQLVRADVSTIGLGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASGQAIDVEIQAREIMHNKNN+ RIIS +TGHPF+KVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFDKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYGLIDGVIDKD+IIPLM +PERVKA+LNYEEISKDPRKFLTPDVPDDEIY
Sbjct: 241 EAVEYGLIDGVIDKDSIIPLMPVPERVKASLNYEEISKDPRKFLTPDVPDDEIY 294

[Close]

BLAST of Carg16286-RA vs. NCBI nr
Match: XP_008448589.1 (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucumis melo])

HSP 1 Score: 498.4 bits (1282), Expect = 1.6e-137
Identity = 262/294 (89.12%), Postives = 278/294 (94.56%), Query Frame = 0


Query: 1   MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATALKSSRTLAPP 60
           MELLSRCSTL+P ASSL LPNSHGK S F+PK KS+LSFPS+SSVLK TALK SRTL PP
Sbjct: 1   MELLSRCSTLIPQASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  CSVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTK 120
           CSV MT PQTPD++R GAETDAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDAQDSTK
Sbjct: 61  CSV-MTAPQTPDASRRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINS+GGSLSATMAI DV+QLVRADVSTIALGIAASTASIILGGGTKGKR AMPNA
Sbjct: 121 DIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASGQAIDVEIQAREIMHNKNN+ RIIS +TGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYGLIDGVID+D+IIPL+ +PERVKATLNYEE+SKDPRKFLTPDVPDDEIY
Sbjct: 241 EAVEYGLIDGVIDRDSIIPLVPVPERVKATLNYEEMSKDPRKFLTPDVPDDEIY 293

[Close]

BLAST of Carg16286-RA vs. TAIR10
Match: AT5G45390.1 (CLP protease P4)

HSP 1 Score: 353.6 bits (906), Expect = 1.2e-97
Identity = 182/226 (80.53%), Postives = 202/226 (89.38%), Query Frame = 0


Query: 69  QTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTKDIRLFINS 128
           QT +SA  GAE+D MGLLLRERIVFLG++IDDFVADAI+SQLLLLDA+D  KDI+LFINS
Sbjct: 67  QTQESAIRGAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINS 126

Query: 129 SGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPL 188
            GGSLSATMAI DV+QLVRADVSTIALGIAASTASIILG GTKGKRFAMPN RIM+HQPL
Sbjct: 127 PGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPL 186

Query: 189 GGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLI 248
           GGASGQAIDVEIQA+E+MHNKNN+  II+  T   FE+V KDIDRDRYMSPIEAVEYGLI
Sbjct: 187 GGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLI 246

Query: 249 DGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           DGVID D+IIPL  +P+RVK  +NYEEISKDP KFLTP++PDDEIY
Sbjct: 247 DGVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIPDDEIY 292

[Close]

BLAST of Carg16286-RA vs. TAIR10
Match: AT1G66670.1 (CLP protease proteolytic subunit 3)

HSP 1 Score: 191.8 bits (486), Expect = 5.9e-49
Identity = 110/254 (43.31%), Postives = 162/254 (63.78%), Query Frame = 0


Query: 16  SLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATA----LKSSRTLA-PPCSVLM----- 75
           SL L +S   + +       +L+FP  +  +  T+    ++SS +L+ PP   L      
Sbjct: 4   SLRLASSSTSNPICLLNPGKNLNFPIRNHRIPKTSKPFCVRSSMSLSKPPRQTLSSNWDV 63

Query: 76  ------TTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDST 135
                 +  Q+P    +  E D   +LLR+RIVFLG+ +DD  AD +ISQLLLLDA+DS 
Sbjct: 64  SSFSIDSVAQSPSRLPSFEELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSE 123

Query: 136 KDIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPN 195
           +DI LFINS GGS++A M I D ++  +ADVST+ LG+AAS  + +L  G+KGKR+ MPN
Sbjct: 124 RDITLFINSPGGSITAGMGIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPN 183

Query: 196 ARIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSP 254
           +++M+HQPLG A G+A ++ I+ RE+M++K  + +I S  TG P  +++ D DRD +++P
Sbjct: 184 SKVMIHQPLGTAGGKATEMSIRIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNP 243

[Close]

BLAST of Carg16286-RA vs. TAIR10
Match: AT1G02560.1 (nuclear encoded CLP protease 5)

HSP 1 Score: 179.1 bits (453), Expect = 4.0e-45
Identity = 87/167 (52.10%), Postives = 124/167 (74.25%), Query Frame = 0


Query: 86  LLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGSLSATMAIIDVLQL 145
           L + RI+  G  +DD +A+ I++QLL LDA D TKDI +++NS GGS++A MAI D ++ 
Sbjct: 119 LFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRH 178

Query: 146 VRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGASGQAIDVEIQAREI 205
           +R DVST+ +G+AAS  + +L  GTKGKR+++PN+RIM+HQPLGGA G   D++IQA E+
Sbjct: 179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM 238

Query: 206 MHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVI 253
           +H+K N+   ++ +TG   EK+ +D DRD +MS  EA EYGLIDGVI
Sbjct: 239 LHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 285

[Close]

BLAST of Carg16286-RA vs. TAIR10
Match: AT1G11750.2 (CLP protease proteolytic subunit 6)

HSP 1 Score: 154.8 bits (390), Expect = 8.0e-38
Identity = 77/188 (40.96%), Postives = 115/188 (61.17%), Query Frame = 0


Query: 68  PQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTKDIRLFIN 127
           P  P     G   D   +L R RI+F+G  I+  VA  +ISQL+ L + D   DI +++N
Sbjct: 101 PVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDILMYLN 160

Query: 128 SSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQP 187
             GGS  + +AI D +  ++  V T+A G+AAS  +++L GG KG R+AMPN R+M+HQP
Sbjct: 161 CPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVMIHQP 220

Query: 188 LGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGL 247
             G  G   DV  Q  E +  +  I R+ + +TG P EKVQ+  +RDR++S  EA+E+GL
Sbjct: 221 QTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEALEFGL 280

Query: 248 IDGVIDKD 256
           IDG+++ +
Sbjct: 281 IDGLLETE 288

[Close]

BLAST of Carg16286-RA vs. TAIR10
Match: AT5G23140.1 (nuclear-encoded CLP protease P7)

HSP 1 Score: 145.2 bits (365), Expect = 6.3e-35
Identity = 78/215 (36.28%), Postives = 132/215 (61.40%), Query Frame = 0


Query: 41  SSSSVLKATALKSSRTLAPPCSVLMTTPQTPDSARTGAET-DAMGLLLRERIVFLGNNID 100
           S + +L +T    + ++A         P   + +  G    D    LL+ERI+ +   I+
Sbjct: 7   SGAKMLSSTPSSMATSIATGRRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPIN 66

Query: 101 DFVADAIISQLLLLDAQDSTKDIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAA 160
           D  +  +++QLL L++++ +K I +++NS GG ++A +AI D +Q +R+ +STI LG AA
Sbjct: 67  DDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPISTICLGQAA 126

Query: 161 STASIILGGGTKGKRFAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNY 220
           S AS++L  G KG+R ++PNA +M+HQP GG SGQA D+ I  ++I+   + +  +   +
Sbjct: 127 SMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAKDITIHTKQIVRVWDALNELYVKH 186

Query: 221 TGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVIDK 255
           TG P + V  ++DRD +M+P EA  +G+ID VID+
Sbjct: 187 TGQPLDVVANNMDRDHFMTPEEAKAFGIIDEVIDE 221

[Close]

BLAST of Carg16286-RA vs. Swiss-Prot
Match: sp|Q94B60|CLPP4_ARATH (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPP4 PE=1 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 2.1e-96
Identity = 182/226 (80.53%), Postives = 202/226 (89.38%), Query Frame = 0


Query: 69  QTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTKDIRLFINS 128
           QT +SA  GAE+D MGLLLRERIVFLG++IDDFVADAI+SQLLLLDA+D  KDI+LFINS
Sbjct: 67  QTQESAIRGAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINS 126

Query: 129 SGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPL 188
            GGSLSATMAI DV+QLVRADVSTIALGIAASTASIILG GTKGKRFAMPN RIM+HQPL
Sbjct: 127 PGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPL 186

Query: 189 GGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLI 248
           GGASGQAIDVEIQA+E+MHNKNN+  II+  T   FE+V KDIDRDRYMSPIEAVEYGLI
Sbjct: 187 GGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLI 246

Query: 249 DGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           DGVID D+IIPL  +P+RVK  +NYEEISKDP KFLTP++PDDEIY
Sbjct: 247 DGVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIPDDEIY 292

[Close]

BLAST of Carg16286-RA vs. Swiss-Prot
Match: sp|Q3ANI8|CLPP1_SYNSC (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9605) OX=110662 GN=clpP1 PE=3 SV=2)

HSP 1 Score: 207.2 bits (526), Expect = 2.5e-52
Identity = 100/181 (55.25%), Postives = 136/181 (75.14%), Query Frame = 0


Query: 73  SARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGS 132
           S R     D    LLRERI+FLG  +DD VADA+++Q+L L+A+D  KDI+++INS GGS
Sbjct: 16  SGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYINSPGGS 75

Query: 133 LSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGAS 192
           ++A +AI D +Q V  DV TI  G+AAS  + +L GGTKGKR A+PNARIM+HQPLGGA 
Sbjct: 76  VTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQ 135

Query: 193 GQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVI 252
           GQA+D+EIQA+EI++ K  +  +++ +TG P +K+ +D DRD ++SP EAVEYGLID V+
Sbjct: 136 GQAVDIEIQAKEILYLKETLNGLMAEHTGQPLDKISEDTDRDYFLSPAEAVEYGLIDRVV 195

Query: 253 D 254
           D
Sbjct: 196 D 196

[Close]

BLAST of Carg16286-RA vs. Swiss-Prot
Match: sp|Q3B0U1|CLPP2_SYNS9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpP2 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 5.5e-52
Identity = 99/181 (54.70%), Postives = 135/181 (74.59%), Query Frame = 0


Query: 73  SARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGS 132
           S R     D    LLRERI+FLG  +DD VADA+++Q+L L+A+D  KDI++++NS GGS
Sbjct: 16  SGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYVNSPGGS 75

Query: 133 LSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGAS 192
           ++A +AI D +Q V  DV TI  G+AAS  + +L GGTKGKR A+PNARIM+HQPLGGA 
Sbjct: 76  VTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQ 135

Query: 193 GQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVI 252
           GQA+D+EIQA+EI+  K  +  +++ +TG P +K+ +D DRD ++SP EAVEYGLID V+
Sbjct: 136 GQAVDIEIQAKEILFLKETLNGLLAEHTGQPLDKISEDTDRDYFLSPAEAVEYGLIDRVV 195

Query: 253 D 254
           D
Sbjct: 196 D 196

[Close]

BLAST of Carg16286-RA vs. Swiss-Prot
Match: sp|O34125|CLPP2_SYNE7 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN=clpP2 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.2e-51
Identity = 102/185 (55.14%), Postives = 138/185 (74.59%), Query Frame = 0


Query: 73  SARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGS 132
           S R     D    LLRERIVFLG  +DD VAD+I++QLL L+A+D  KDI+L+INS GGS
Sbjct: 45  SGRGERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGS 104

Query: 133 LSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGAS 192
           ++A MAI D +Q V  DV+TI  G+AAS  + +L GG +GKR A+P+ARIM+HQPLGGA 
Sbjct: 105 VTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQ 164

Query: 193 GQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVI 252
           GQA+D+EIQAREI+++K+ +  +++ +TG P EK++ D DRD +MSP EA  YGLID V+
Sbjct: 165 GQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 224

Query: 253 DKDTI 258
            + T+
Sbjct: 225 TRPTM 229

[Close]

BLAST of Carg16286-RA vs. Swiss-Prot
Match: sp|Q5N1P6|CLPP3_SYNP6 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpP3 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.2e-51
Identity = 102/185 (55.14%), Postives = 138/185 (74.59%), Query Frame = 0


Query: 73  SARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGS 132
           S R     D    LLRERIVFLG  +DD VAD+I++QLL L+A+D  KDI+L+INS GGS
Sbjct: 45  SGRGERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGS 104

Query: 133 LSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGAS 192
           ++A MAI D +Q V  DV+TI  G+AAS  + +L GG +GKR A+P+ARIM+HQPLGGA 
Sbjct: 105 VTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQ 164

Query: 193 GQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVI 252
           GQA+D+EIQAREI+++K+ +  +++ +TG P EK++ D DRD +MSP EA  YGLID V+
Sbjct: 165 GQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 224

Query: 253 DKDTI 258
            + T+
Sbjct: 225 TRPTM 229

[Close]

BLAST of Carg16286-RA vs. TrEMBL
Match: tr|A0A1S3BJF4|A0A1S3BJF4_CUCME (ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103490719 PE=3 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 1.1e-137
Identity = 262/294 (89.12%), Postives = 278/294 (94.56%), Query Frame = 0


Query: 1   MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATALKSSRTLAPP 60
           MELLSRCSTL+P ASSL LPNSHGK S F+PK KS+LSFPS+SSVLK TALK SRTL PP
Sbjct: 1   MELLSRCSTLIPQASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  CSVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTK 120
           CSV MT PQTPD++R GAETDAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDAQDSTK
Sbjct: 61  CSV-MTAPQTPDASRRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINS+GGSLSATMAI DV+QLVRADVSTIALGIAASTASIILGGGTKGKR AMPNA
Sbjct: 121 DIRLFINSAGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASGQAIDVEIQAREIMHNKNN+ RIIS +TGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISEFTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYGLIDGVID+D+IIPL+ +PERVKATLNYEE+SKDPRKFLTPDVPDDEIY
Sbjct: 241 EAVEYGLIDGVIDRDSIIPLVPVPERVKATLNYEEMSKDPRKFLTPDVPDDEIY 293

[Close]

BLAST of Carg16286-RA vs. TrEMBL
Match: tr|A0A0A0L3S1|A0A0A0L3S1_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus OX=3659 GN=Csa_3G005040 PE=3 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 3.4e-131
Identity = 250/294 (85.03%), Postives = 270/294 (91.84%), Query Frame = 0


Query: 1   MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKATALKSSRTLAPP 60
           MELLSRCSTL PHASSL LPNSHGK S F+PK KS+LSFPS+SSVLK TALK SRTL PP
Sbjct: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSRTLPPP 60

Query: 61  CSVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSTK 120
           CSV MT PQTPD+AR GAETDAMGLLLRERIVFLGN+IDDFVADAIISQLLLLDA+DSTK
Sbjct: 61  CSV-MTAPQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTK 120

Query: 121 DIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNA 180
           DIRLFINS+GGSLS+TMAI DV+QLVRADVSTIALGIAASTASIILGGGTKGKR AMPNA
Sbjct: 121 DIRLFINSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNA 180

Query: 181 RIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRYMSPI 240
           RIMVHQPLGGASG A+DVEIQAREIM NK+N+IRIIS +TGHPFEKVQKDIDRDRYMSPI
Sbjct: 181 RIMVHQPLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPI 240

Query: 241 EAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           EAVEYG IDGVID+D+IIPLM +P++VK   NY E+ KDP KFLTPDVPDDEI+
Sbjct: 241 EAVEYGFIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMKDPMKFLTPDVPDDEIF 293

[Close]

BLAST of Carg16286-RA vs. TrEMBL
Match: tr|A0A0D2R6I8|A0A0D2R6I8_GOSRA (ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii OX=29730 GN=B456_004G175000 PE=3 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 4.7e-109
Identity = 225/298 (75.50%), Postives = 245/298 (82.21%), Query Frame = 0


Query: 1   MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKA---TALKSSRTL 60
           M LLS  S+L P  SSL L           PK K SL+FP+ S V  A   T L SS  L
Sbjct: 1   MGLLSLSSSLTPSFSSLHLK----------PKHKLSLTFPNPSFVCSAPTSTPLSSSLKL 60

Query: 61  APPC-SVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ 120
            P   S+ ++ PQ+P +A  GAE DAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ
Sbjct: 61  KPTANSLKLSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ 120

Query: 121 DSTKDIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFA 180
           D TKDIRLFINS GGSLSATMAI DV+QLVRADVST+ +GIAASTASIILGGGTKGKRFA
Sbjct: 121 DPTKDIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFA 180

Query: 181 MPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRY 240
           MPN RIM+HQPLGGASGQAIDVEIQAREIMHNKNN+ RIIS  TG PFE+V KDIDRDRY
Sbjct: 181 MPNTRIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRY 240

Query: 241 MSPIEAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           MSPIEAVEYG+IDGVID+D+IIPL  +PERVKA+LNYEEISKDPRKFLTPD+PDDEIY
Sbjct: 241 MSPIEAVEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of Carg16286-RA vs. TrEMBL
Match: tr|A0A1U8IV12|A0A1U8IV12_GOSHI (ATP-dependent Clp protease proteolytic subunit OS=Gossypium hirsutum OX=3635 GN=LOC107900718 PE=3 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 8.0e-109
Identity = 225/298 (75.50%), Postives = 246/298 (82.55%), Query Frame = 0


Query: 1   MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKA---TALKSSRTL 60
           M LLS  S+L P     S P+ H K     PK K SL+FP+ S V  A   T L SS  L
Sbjct: 1   MGLLSLSSSLTP-----SFPSLHLK-----PKHKLSLTFPNPSFVCSAPTSTPLSSSLKL 60

Query: 61  APPC-SVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ 120
            P   S+ ++ PQ+P +A  GAE DAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ
Sbjct: 61  KPTANSLKLSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ 120

Query: 121 DSTKDIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFA 180
           D TKDIRLFINS GGSLSATMAI DV+QLVRADVST+ +GIAASTASIILGGGTKGKRFA
Sbjct: 121 DPTKDIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFA 180

Query: 181 MPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRY 240
           MPN RIM+HQPLGGASGQAIDVEIQAREIMHNKNN+ RIIS  TG PFE+V KDIDRDRY
Sbjct: 181 MPNTRIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRY 240

Query: 241 MSPIEAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           MSPIEAVEYG+IDGVID+D+IIPL  +PERVKA+LNYEEISKDPRKFLTPD+PDDEIY
Sbjct: 241 MSPIEAVEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

[Close]

BLAST of Carg16286-RA vs. TrEMBL
Match: tr|A0A2P5RSP6|A0A2P5RSP6_GOSBA (ATP-dependent Clp protease proteolytic subunit OS=Gossypium barbadense OX=3634 GN=GOBAR_DD13246 PE=3 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 8.0e-109
Identity = 225/298 (75.50%), Postives = 246/298 (82.55%), Query Frame = 0


Query: 1   MELLSRCSTLVPHASSLSLPNSHGKSSVFYPKRKSSLSFPSSSSVLKA---TALKSSRTL 60
           M LLS  S+L P     S P+ H K     PK K SL+FP+ S V  A   T L SS  L
Sbjct: 1   MGLLSLSSSLTP-----SFPSLHLK-----PKHKLSLTFPNPSFVCSAPTSTPLSSSLKL 60

Query: 61  APPC-SVLMTTPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ 120
            P   S+ ++ PQ+P +A  GAE DAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ
Sbjct: 61  KPTANSLKLSAPQSPATAMRGAEADAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQ 120

Query: 121 DSTKDIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFA 180
           D TKDIRLFINS GGSLSATMAI DV+QLVRADVST+ +GIAASTASIILGGGTKGKRFA
Sbjct: 121 DPTKDIRLFINSPGGSLSATMAIYDVVQLVRADVSTVGIGIAASTASIILGGGTKGKRFA 180

Query: 181 MPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNIIRIISNYTGHPFEKVQKDIDRDRY 240
           MPN RIM+HQPLGGASGQAIDVEIQAREIMHNKNN+ RIIS  TG PFE+V KDIDRDRY
Sbjct: 181 MPNTRIMIHQPLGGASGQAIDVEIQAREIMHNKNNVTRIISASTGRPFEQVLKDIDRDRY 240

Query: 241 MSPIEAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDVPDDEIY 295
           MSPIEAVEYG+IDGVID+D+IIPL  +PERVKA+LNYEEISKDPRKFLTPD+PDDEIY
Sbjct: 241 MSPIEAVEYGIIDGVIDRDSIIPLEPVPERVKASLNYEEISKDPRKFLTPDIPDDEIY 288

The following BLAST results are available for this feature:

BLAST of Carg16286-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937184.1	1.6e-153	98.98	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucurbita mosch...	[more]
XP_023540498.1	5.8e-151	97.28	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Cucurbita ...	[more]
XP_023005152.1	1.1e-149	96.60	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Cucurbita ...	[more]
XP_022145352.1	7.8e-140	90.82	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Momordica chara...	[more]
XP_008448589.1	1.6e-137	89.12	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucu...	[more]

BLAST of Carg16286-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45390.1	1.2e-97	80.53	CLP protease P4	[more]
AT1G66670.1	5.9e-49	43.31	CLP protease proteolytic subunit 3	[more]
AT1G02560.1	4.0e-45	52.10	nuclear encoded CLP protease 5	[more]
AT1G11750.2	8.0e-38	40.96	CLP protease proteolytic subunit 6	[more]
AT5G23140.1	6.3e-35	36.28	nuclear-encoded CLP protease P7	[more]

BLAST of Carg16286-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94B60\|CLPP4_ARATH	2.1e-96	80.53	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis t...	[more]
sp\|Q3ANI8\|CLPP1_SYNSC	2.5e-52	55.25	ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC...	[more]
sp\|Q3B0U1\|CLPP2_SYNS9	5.5e-52	54.70	ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC...	[more]
sp\|O34125\|CLPP2_SYNE7	1.2e-51	55.14	ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (str...	[more]
sp\|Q5N1P6\|CLPP3_SYNP6	1.2e-51	55.14	ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain AT...	[more]

BLAST of Carg16286-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BJF4\|A0A1S3BJF4_CUCME	1.1e-137	89.12	ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A0A0L3S1\|A0A0A0L3S1_CUCSA	3.4e-131	85.03	ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus OX=3659 GN=Csa...	[more]
tr\|A0A0D2R6I8\|A0A0D2R6I8_GOSRA	4.7e-109	75.50	ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii OX=29730 G...	[more]
tr\|A0A1U8IV12\|A0A1U8IV12_GOSHI	8.0e-109	75.50	ATP-dependent Clp protease proteolytic subunit OS=Gossypium hirsutum OX=3635 GN=...	[more]
tr\|A0A2P5RSP6\|A0A2P5RSP6_GOSBA	8.0e-109	75.50	ATP-dependent Clp protease proteolytic subunit OS=Gossypium barbadense OX=3634 G...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Molecular Function**
Term	Definition
GO:0004252	serine-type endopeptidase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR029045	ClpP/crotonase-like_dom_sf
IPR033135	ClpP_His_AS
IPR023562	ClpP/TepA
IPR001907	ClpP

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004252	serine-type endopeptidase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg16286	Carg16286	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg16286-RA.exon.1	Carg16286-RA.exon.1	exon
Carg16286-RA.exon.2	Carg16286-RA.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg16286-RA.CDS.1	Carg16286-RA.CDS.1	CDS
Carg16286-RA.CDS.2	Carg16286-RA.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg16286-RA	Carg16286-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 152..169 score: 50.56 coord: 121..141 score: 51.55 coord: 173..192 score: 58.38 coord: 81..96 score: 46.88 coord: 230..249 score: 56.38
IPR001907	ATP-dependent Clp protease proteolytic subunit	HAMAP	MF_00444	ClpP	coord: 66..255 score: 36.268
IPR001907	ATP-dependent Clp protease proteolytic subunit	CDD	cd07017	S14_ClpP_2	coord: 81..251 e-value: 1.03743E-93 score: 276.63
None	No IPR available	GENE3D	G3DSA:3.90.226.10		coord: 62..257 e-value: 1.6E-64 score: 219.3
None	No IPR available	PANTHER	PTHR10381:SF24	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 4, CHLOROPLASTIC	coord: 23..294
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 80..254 e-value: 1.9E-70 score: 236.4
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 23..294
IPR033135	ClpP, histidine active site	PROSITE	PS00382	CLP_PROTEASE_HIS	coord: 174..187
IPR029045	ClpP/crotonase-like domain superfamily	SUPERFAMILY	SSF52096	ClpP/crotonase	coord: 80..256