CmaCh16G012180.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTTGTATTTCTGTATTTCTGTACTTCTCACCCAACCAAATCCCCAAACTCATCGTCTATCAGCTTCTTCCTGGTTTCAGAGCTGAAGTAGAGCAGTGCTGCAAATCCATGGAGCTTCTTTCACGCTGTTCTACTCTGATTCCTCATGCCTCCTCTCTCGGCCTTCTCAATTCTCATGGGAAACCGTCAAATTTCTATCCAAAGCTCAAATCCGGTCTTTCTTTTCCTTCGGCTTCATCGGTTCTCAAAACAACCGCTCGTAAGCCCTCGAGAACCCTAGCTACGTCCTCTTCTGTTCATATGACGGGTCCGCAAACGCCGGATGCCGCCCAGAGAGGCGCCGAGACTGACGCTATGGGACTGCTTCTCAGGGAGAGGATTGTCTTCTTGGGGAACAGCATCGATGATTTTGTGGCGGATGCTATTATCAGTCAGCTTTTGCTCTTGGATGCTCAGGACTCTACTAAAGATATCAGACTTTTCATTAATTCCTCTGGCGGCTCTCTCAGGTATTCACGAGGTGATTTTTTGTGCATAATGTAGTTGGTGAAGTATGGAATATGAAATTCGGGCTCATTTGTGTTCTTTCCAAACGATTTAGGTAATTTTATTTCTAGGAATATGCGATTTATGCCTAACTTTCATATGCTTTCCTTACCGCGCCGAATGCAAGAGTTAGCCTACGTTACTTGATCTCTGCCTCTCGCAATTTCTATATAGTTTTCTTCATCTGCTTCACAAACGGTTAGCGTACGAATGGGGGCATTCATTCCGGTGGTGAGTTGGGTCACTGAAAATCTAGGATTCGTTGTAGATCAATGAACTTGGAATGGAAAATTACTTTTAATATATAGAGATATTCATGTTATGCACCTAGCTATCCATAGAAATGCTTGTGAATGATGAAAGTTATATGAACATTCAACATTGAAATTATTTTAAAAAAAGAAAAAAAAAAAAAGAAAAGAAAGAACCGTGCATGAGTGTTAGTCTACCGTGTTACGCGGAACTTTGCTGGTCTTCTTATTTCTTTGGGTGGCTTGAGAATTTGAAATGTAAGGACTAGAAACACCGCCTTCCTCTCAAAGTGGATGCTTGGGTGAAGAGAGTCCCCCTAGAAGAGGCTTAATCGAGTAAATATGCGATTGGCAATCTTTGTGAAACTTAGGTTCTAGAGCTGACATTGATTAAATATGAGATTTCTTTTATCAGTGTCCTTTTAAAAAATGGCAATGGTCGGGGGGACATCAATGAAATCTGCCAATCTCCAGCTGAATTGTAAAGAAGGCTGGTTAGATAAACCCTTTTTTCTTTGGTTTGAAAGGAGAACTCTCAGTTCTTCCTTTGGGATATGACTTACAAGAGCCTAAACACTTGTGATTGGATTCAAAAGATGATCCCTTCCATGGCTTTATCTCTTTGCTTACCCTGCATATCTAATGATGGGGACCATCTTTTTATTCAATTAACAACATGTTGCACAAAGGTTTACATGTGATTCTGTTATGAACCCCCCACCGTTCTGGATAGGAATCAATTTCACGGACTAAATGAAATGATACAAATAGGTAAACCCATCTGAAAAGGAACCATATTTTTGGACAACGATTCTCAATATATTCGGATGACATCTCACATTTACTAGGGAGGTAAAGGATATATAGGATATGGCCTTAACGTACTCCCTTTCAAGAATGCAAAAGTCCTACTATGGAAAAATCTCATCATGGCTTTCCTTTGGAATTGTGGAAAGAAAGAAATCAGAGAATATTTGTAGAAAAACACATACTTACAAAACTTTTCGACAATGTTGTTTACCAAGCTATATCTTGGTGTAAACTGTCTAATATTTTTACTTCCTATAGTTATACCTCACTCATTGCAAATTGGGAAGGTCTTTTGTAAATACCATGGATATTACTTCCCTTTTGTAAATTTCAATCATCAATGAAATTGTCTCTTATAAAAAAAAAAAAATCTAAAAAAATCTATAAAAAAAGAAAATGAACCATATTTTTACACCAATAAGGAGCTATGAAACAATAGGCTTTTAGGACTTCGAGTGGAGAGTTTCTTTGTCTTGAAAATCTTCAAGTTCAATTCATTCCAAATCTACCAAATAACTGGCCTCACAATGAATGACCAAATGATATTCTCTGTCGACTTGATGGATGATCTGAGCCAATCAAGAACCCCATTTTATAAGGACCAATTTCCTAAATCAGTGCTCCTTTGAGATAGGCGCTAACACTCCTCCTAAGTGAGTAAGCATGTTGGCCAAACCAAGAATTGAATGTTTCTTTCTGAACTGCACTGGTGACATGTTGCCTCTTTGAGATTCTTTCTTCTTTGGAGAAGGGATGTGCCTGTTGGGCGACCACTGAGGAATTTAATGTGTTTGTGTCTATGTCTAGAGTCAAGTGTATTCATCTACTCTACTTTTCTACATGAATGGGAATATCAGCAAACCATGGAAACATTTTTGTATCCATGGTTTGCATGGCCTTTATGTACATTAGGAAATCTTCAAGAGTAATTTAATTTAGAATTCTGTGGCTTATGAATGACCTTTTCATGATCCTCTCTTTGCATCTTTGATGTGCAACTACTTGCTAATGGTAAATCTATCATTCACCACCAAATCAGCTATTTTCAAATTGTATATTGATATGCAACTACATAAGGATGCTCGTGAGAGGTGTAATCTGAAGAAATTATGTACTCTACCTAGCCCATTTGTCAGAAAAGGTTATGTTTAATAAGTTCCACATCTATTAATCCTTATTTTGATTAACGAACACACCTTTCTAACTTTGTCATAATCCAAACCACAGTCTCCCAGTTGTGTACCGAGCAGATTCCTTTTCAGCCGAATGTCCCCCAAGTTCGGTCTTCTTTCAAGCAATCAAACCAGTTATCTTCCTAGATTGAGATCCTAAGTGTTAGACAAACACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGTATAAGCTCTCATGGTTTTGCTTTGGGCTTCCCAAAAGGCCTCATACCAATGGAGTTAGTATTTCTCACTTATAAACCCATGATTATTCCCTGAATTAGCCGATGTGGAATCCAACACCTCCCCTCGAACAAAGCACGCCTCCCCTTAATCGAGGCTCGACTCCTTTGGAGTCTTAGTCATTTTTTACTGCCTTCGTACCTTCGAGGAGGCTTGACTCCTTTTTTCTTTTTGGAGTCCTTTGTTCGACATTCGAGGATTTGCCAATCTATTGGCACGGCTAAGTTTAGGGCATGACTCTGATACCATGTTAGACGAACACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCAAAAGGCCTCATACCAATGGAGTTAGTATTCCTCACTTATAAACCCATGATCATTTCCTAAATTAGCCGATGTGGAATCCAACACTAAGCTCATTCCCCATCGTATAAAGCAAACCCTTTTCGGACAAACCTGTACATCTAGCAAGAACAGGCCAGGGGCAGAAGGAAGACTAGGTTACGTGGTTTCATTTGTTTTGTGTGTTCCAGGACTTCAAATTTTAGAAGTAGGAGTGTTATATAATCATACTTATAAAAATTCTTGTCATTATTTATTTGAAGCTGGAAATATCAATTATTAGGCGTTTTTACTATATATGTTGGTTTTTCCCTCTTCTGTCTTGGAAATTTAGGTTCAACTTTCGATGAGTGGCACCTGATCTCATCCATTTTTGCATCATATTCATTATCATTCTGAAAGTCGATAGTCTTCTTAGTTAATATTTCGTGTTTGGTTGTATTACATTACCCTTGCCTGATTTCCTTCTATTAATGTTGTTTTCATTAGTGCAACCATGGCTATCTACGATGTCATACAGCTCGTGAGAGCCGATGTCTCTACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGTGGTGGCACTAAAGGAAAGCGTCTTGCGATGCCCAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGGCAAGCAATAGACGTGGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATTACAAGAATCATTTCCGAGTTCACTGGCCATCCATTTGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCCCCCATAGAGGCTGTAGAATATGGATTGATTGATGGAGTGATCGACAAGGACAGCATTATACCTCTCGTACCCGTGCCAGAACGAGTGAAGGCAAGTTTAAATTATATAGAAATTAGTAAAGATCCCAAAAAATTCTTCTCACCAGATGTCCCCGACGACGAGATATACTAGTTTCAAGCGTTTCAATGTACCGTTTTCTAGGCTTTCGATTTATATGATTCACTTGTAGAATCTTATGTGTGAGCAAAGTCATGGTAAGCGGAAACCAGAAATATTCTGGAACTTGCTGAGCTCATCACCTTCGTCTCTACTTACCACAAGTTAAAGAGGTATTGGGAATTTGGACTCTTTTTCTATCTATGACATTATCAAATTAGCATTCTTGAGAAAGGAAAACTTGGCATTGAATCATATTTTTGTATTGGCAGTGTATATTTGTTGATTGATTCATGAATATCGTCATTTTTCCAATCGTCATTTGGCGATACGGTGATTTAA TTTTTGTATTTCTGTATTTCTGTACTTCTCACCCAACCAAATCCCCAAACTCATCGTCTATCAGCTTCTTCCTGGTTTCAGAGCTGAAGTAGAGCAGTGCTGCAAATCCATGGAGCTTCTTTCACGCTGTTCTACTCTGATTCCTCATGCCTCCTCTCTCGGCCTTCTCAATTCTCATGGGAAACCGTCAAATTTCTATCCAAAGCTCAAATCCGGTCTTTCTTTTCCTTCGGCTTCATCGGTTCTCAAAACAACCGCTCGTAAGCCCTCGAGAACCCTAGCTACGTCCTCTTCTGTTCATATGACGGGTCCGCAAACGCCGGATGCCGCCCAGAGAGGCGCCGAGACTGACGCTATGGGACTGCTTCTCAGGGAGAGGATTGTCTTCTTGGGGAACAGCATCGATGATTTTGTGGCGGATGCTATTATCAGTCAGCTTTTGCTCTTGGATGCTCAGGACTCTACTAAAGATATCAGACTTTTCATTAATTCCTCTGGCGGCTCTCTCAGTGCAACCATGGCTATCTACGATGTCATACAGCTCGTGAGAGCCGATGTCTCTACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGTGGTGGCACTAAAGGAAAGCGTCTTGCGATGCCCAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGGCAAGCAATAGACGTGGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATTACAAGAATCATTTCCGAGTTCACTGGCCATCCATTTGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCCCCCATAGAGGCTGTAGAATATGGATTGATTGATGGAGTGATCGACAAGGACAGCATTATACCTCTCGTACCCGTGCCAGAACGAGTGAAGGCAAGTTTAAATTATATAGAAATTAGTAAAGATCCCAAAAAATTCTTCTCACCAGATGTCCCCGACGACGAGATATACTAGTTTCAAGCGTTTCAATGTACCGTTTTCTAGGCTTTCGATTTATATGATTCACTTGTAGAATCTTATGTGTGAGCAAAGTCATGGTAAGCGGAAACCAGAAATATTCTGGAACTTGCTGAGCTCATCACCTTCGTCTCTACTTACCACAAGTTAAAGAGGTATTGGGAATTTGGACTCTTTTTCTATCTATGACATTATCAAATTAGCATTCTTGAGAAAGGAAAACTTGGCATTGAATCATATTTTTGTATTGGCAGTGTATATTTGTTGATTGATTCATGAATATCGTCATTTTTCCAATCGTCATTTGGCGATACGGTGATTTAA ATGGAGCTTCTTTCACGCTGTTCTACTCTGATTCCTCATGCCTCCTCTCTCGGCCTTCTCAATTCTCATGGGAAACCGTCAAATTTCTATCCAAAGCTCAAATCCGGTCTTTCTTTTCCTTCGGCTTCATCGGTTCTCAAAACAACCGCTCGTAAGCCCTCGAGAACCCTAGCTACGTCCTCTTCTGTTCATATGACGGGTCCGCAAACGCCGGATGCCGCCCAGAGAGGCGCCGAGACTGACGCTATGGGACTGCTTCTCAGGGAGAGGATTGTCTTCTTGGGGAACAGCATCGATGATTTTGTGGCGGATGCTATTATCAGTCAGCTTTTGCTCTTGGATGCTCAGGACTCTACTAAAGATATCAGACTTTTCATTAATTCCTCTGGCGGCTCTCTCAGTGCAACCATGGCTATCTACGATGTCATACAGCTCGTGAGAGCCGATGTCTCTACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGTGGTGGCACTAAAGGAAAGCGTCTTGCGATGCCCAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGGCAAGCAATAGACGTGGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATTACAAGAATCATTTCCGAGTTCACTGGCCATCCATTTGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCCCCCATAGAGGCTGTAGAATATGGATTGATTGATGGAGTGATCGACAAGGACAGCATTATACCTCTCGTACCCGTGCCAGAACGAGTGAAGGCAAGTTTAAATTATATAGAAATTAGTAAAGATCCCAAAAAATTCTTCTCACCAGATGTCCCCGACGACGAGATATACTAG MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSGLSFPSASSVLKTTARKPSRTLATSSSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGSLSATMAIYDVIQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFFSPDVPDDEIY
BLAST of CmaCh16G012180.1 vs. Swiss-Prot
Match: CLPP4_ARATH (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana GN=CLPP4 PE=1 SV=1) HSP 1 Score: 365.9 bits (938), Expect = 4.1e-100 Identity = 207/301 (68.77%), Postives = 238/301 (79.07%), Query Frame = 1
BLAST of CmaCh16G012180.1 vs. Swiss-Prot
Match: CLPP1_SYNSC (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9605) GN=clpP1 PE=3 SV=2) HSP 1 Score: 212.6 bits (540), Expect = 5.7e-54 Identity = 104/187 (55.61%), Postives = 141/187 (75.40%), Query Frame = 1
BLAST of CmaCh16G012180.1 vs. Swiss-Prot
Match: CLPP2_SYNS9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9902) GN=clpP2 PE=3 SV=1) HSP 1 Score: 211.5 bits (537), Expect = 1.3e-53 Identity = 103/187 (55.08%), Postives = 140/187 (74.87%), Query Frame = 1
BLAST of CmaCh16G012180.1 vs. Swiss-Prot
Match: CLPP1_PROMM (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (strain MIT 9313) GN=clpP1 PE=3 SV=1) HSP 1 Score: 208.8 bits (530), Expect = 8.3e-53 Identity = 103/187 (55.08%), Postives = 139/187 (74.33%), Query Frame = 1
BLAST of CmaCh16G012180.1 vs. Swiss-Prot
Match: CLPP2_SYNE7 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP2 PE=3 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 1.8e-52 Identity = 103/191 (53.93%), Postives = 143/191 (74.87%), Query Frame = 1
BLAST of CmaCh16G012180.1 vs. TrEMBL
Match: A0A0A0L3S1_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G005040 PE=3 SV=1) HSP 1 Score: 490.0 bits (1260), Expect = 2.1e-135 Identity = 257/294 (87.41%), Postives = 273/294 (92.86%), Query Frame = 1
BLAST of CmaCh16G012180.1 vs. TrEMBL
Match: A0A061G8D9_THECC (ATP-dependent Clp protease proteolytic subunit OS=Theobroma cacao GN=TCM_016742 PE=3 SV=1) HSP 1 Score: 404.1 bits (1037), Expect = 1.5e-109 Identity = 221/294 (75.17%), Postives = 240/294 (81.63%), Query Frame = 1
BLAST of CmaCh16G012180.1 vs. TrEMBL
Match: A0A0D2R6I8_GOSRA (ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii GN=B456_004G175000 PE=3 SV=1) HSP 1 Score: 403.3 bits (1035), Expect = 2.6e-109 Identity = 219/294 (74.49%), Postives = 244/294 (82.99%), Query Frame = 1
BLAST of CmaCh16G012180.1 vs. TrEMBL
Match: A0A0B0PZ48_GOSAR (ATP-dependent Clp protease proteolytic subunit OS=Gossypium arboreum GN=F383_15783 PE=3 SV=1) HSP 1 Score: 398.7 bits (1023), Expect = 6.3e-108 Identity = 216/294 (73.47%), Postives = 240/294 (81.63%), Query Frame = 1
BLAST of CmaCh16G012180.1 vs. TrEMBL
Match: W9RI69_9ROSA (ATP-dependent Clp protease proteolytic subunit OS=Morus notabilis GN=L484_025970 PE=3 SV=1) HSP 1 Score: 393.7 bits (1010), Expect = 2.0e-106 Identity = 216/298 (72.48%), Postives = 248/298 (83.22%), Query Frame = 1
BLAST of CmaCh16G012180.1 vs. TAIR10
Match: AT5G45390.1 (AT5G45390.1 CLP protease P4) HSP 1 Score: 365.9 bits (938), Expect = 2.3e-101 Identity = 207/301 (68.77%), Postives = 238/301 (79.07%), Query Frame = 1
BLAST of CmaCh16G012180.1 vs. TAIR10
Match: AT1G66670.1 (AT1G66670.1 CLP protease proteolytic subunit 3) HSP 1 Score: 198.0 bits (502), Expect = 8.3e-51 Identity = 112/241 (46.47%), Postives = 153/241 (63.49%), Query Frame = 1
BLAST of CmaCh16G012180.1 vs. TAIR10
Match: AT1G02560.1 (AT1G02560.1 nuclear encoded CLP protease 5) HSP 1 Score: 179.5 bits (454), Expect = 3.0e-45 Identity = 87/167 (52.10%), Postives = 124/167 (74.25%), Query Frame = 1
BLAST of CmaCh16G012180.1 vs. TAIR10
Match: AT1G11750.2 (AT1G11750.2 CLP protease proteolytic subunit 6) HSP 1 Score: 158.7 bits (400), Expect = 5.5e-39 Identity = 92/245 (37.55%), Postives = 136/245 (55.51%), Query Frame = 1
BLAST of CmaCh16G012180.1 vs. TAIR10
Match: AT5G23140.1 (AT5G23140.1 nuclear-encoded CLP protease P7) HSP 1 Score: 156.4 bits (394), Expect = 2.8e-38 Identity = 81/215 (37.67%), Postives = 136/215 (63.26%), Query Frame = 1
BLAST of CmaCh16G012180.1 vs. NCBI nr
Match: gi|659095454|ref|XP_008448589.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucumis melo]) HSP 1 Score: 513.1 bits (1320), Expect = 3.3e-142 Identity = 271/294 (92.18%), Postives = 282/294 (95.92%), Query Frame = 1
BLAST of CmaCh16G012180.1 vs. NCBI nr
Match: gi|449456777|ref|XP_004146125.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucumis sativus]) HSP 1 Score: 490.0 bits (1260), Expect = 3.0e-135 Identity = 257/294 (87.41%), Postives = 273/294 (92.86%), Query Frame = 1
BLAST of CmaCh16G012180.1 vs. NCBI nr
Match: gi|590680694|ref|XP_007040931.1| (ATP-dependent Clp protease proteolytic subunit 4 [Theobroma cacao]) HSP 1 Score: 404.1 bits (1037), Expect = 2.1e-109 Identity = 221/294 (75.17%), Postives = 240/294 (81.63%), Query Frame = 1
BLAST of CmaCh16G012180.1 vs. NCBI nr
Match: gi|823151327|ref|XP_012475491.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Gossypium raimondii]) HSP 1 Score: 403.3 bits (1035), Expect = 3.7e-109 Identity = 219/294 (74.49%), Postives = 244/294 (82.99%), Query Frame = 1
BLAST of CmaCh16G012180.1 vs. NCBI nr
Match: gi|728849303|gb|KHG28746.1| (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic -like protein [Gossypium arboreum]) HSP 1 Score: 398.7 bits (1023), Expect = 9.0e-108 Identity = 216/294 (73.47%), Postives = 240/294 (81.63%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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