CmaCh06G009840 (gene) Cucurbita maxima (Rimu)

NameCmaCh06G009840
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr06 : 6671215 .. 6671824 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAATCTTCCTCGTTTTGGTCGTACATGGAACCGTTTCTCTTCCCTGCCCCGCCCTGCCACGGCCCCACGCTTTGATGTTCCGCCGCCGGCTGCCACGTCGGAGCCGGAAGTTTTTTCATCTGCTCCGCCCACCGCCAATGTTCTTCAAACTTCCCCTATTAAAGAAAGGTCTCCTCGAATCACTTCTCCGGTTAGGAAATATCACTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCTAGCACTTCACCCCGCAAGCCACTATCTCCTCCTCCTACATATAACCGTTACGACGGAGAACGGCGGAGCAGTGCCCAGGCTTCTCCTAAAACGTTCAAAACTACCTATACCTCTCCGCCACGATCACCGGCGAAACATAAGTATTCCACCTCCACTGTCCAAGCACCACTCTCTCCTCTGGCTCTGCCTAGCTTGGAGAAGAGACATGAACCTGAGCCAATGGTTCGACCCAGGAGCCCACCGGAGGTTAGTTCAATCACCATTAAAATACCTTATTTCATCCATTAGTAATTTATATATATACTTTTTTATTTTTTATATACAGATTCTGGTCACTTTTCTTAGAAAGAATATAATATAA

mRNA sequence

ATGGCAAATCTTCCTCGTTTTGGTCGTACATGGAACCGTTTCTCTTCCCTGCCCCGCCCTGCCACGGCCCCACGCTTTGATGTTCCGCCGCCGGCTGCCACGTCGGAGCCGGAAGTTTTTTCATCTGCTCCGCCCACCGCCAATGTTCTTCAAACTTCCCCTATTAAAGAAAGGTCTCCTCGAATCACTTCTCCGGTTAGGAAATATCACTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCTAGCACTTCACCCCGCAAGCCACTATCTCCTCCTCCTACATATAACCGTTACGACGGAGAACGGCGGAGCAGTGCCCAGGCTTCTCCTAAAACGTTCAAAACTACCTATACCTCTCCGCCACGATCACCGGCGAAACATAAGTATTCCACCTCCACTGTCCAAGCACCACTCTCTCCTCTGGCTCTGCCTAGCTTGGAGAAGAGACATGAACCTGAGCCAATGGTTCGACCCAGGAGCCCACCGGAGATTCTGGTCACTTTTCTTAGAAAGAATATAATATAA

Coding sequence (CDS)

ATGGCAAATCTTCCTCGTTTTGGTCGTACATGGAACCGTTTCTCTTCCCTGCCCCGCCCTGCCACGGCCCCACGCTTTGATGTTCCGCCGCCGGCTGCCACGTCGGAGCCGGAAGTTTTTTCATCTGCTCCGCCCACCGCCAATGTTCTTCAAACTTCCCCTATTAAAGAAAGGTCTCCTCGAATCACTTCTCCGGTTAGGAAATATCACTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCTAGCACTTCACCCCGCAAGCCACTATCTCCTCCTCCTACATATAACCGTTACGACGGAGAACGGCGGAGCAGTGCCCAGGCTTCTCCTAAAACGTTCAAAACTACCTATACCTCTCCGCCACGATCACCGGCGAAACATAAGTATTCCACCTCCACTGTCCAAGCACCACTCTCTCCTCTGGCTCTGCCTAGCTTGGAGAAGAGACATGAACCTGAGCCAATGGTTCGACCCAGGAGCCCACCGGAGATTCTGGTCACTTTTCTTAGAAAGAATATAATATAA

Protein sequence

MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSPRITSPVRKYHSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYTSPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEILVTFLRKNII
BLAST of CmaCh06G009840 vs. TrEMBL
Match: A0A0A0L5T3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119290 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.2e-49
Identity = 110/167 (65.87%), Postives = 131/167 (78.44%), Query Frame = 1

Query: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
           M+NLPRFGR WNRFSSLPRP TA R +  P  A +EPEVF SA PT N  QTSPIK+R+P
Sbjct: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP 60

Query: 61  RITSPVRKYHSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
           R++SPV+K+ SPP+SPKY + A + SPRKPLSPPP +NRY+GERR+SA  SPKTFK T+ 
Sbjct: 61  RLSSPVKKFSSPPSSPKY-SGAGTVSPRKPLSPPPVHNRYEGERRTSATTSPKTFKPTHI 120

Query: 121 SPPRSPAKHKYST-STVQAPLSPLALPSLEKRHEPEPMVRPRSPPEI 167
           SPP SP+K ++ST  T  APLSPLALP  + R EPE  +RPRSPPEI
Sbjct: 121 SPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEI 166

BLAST of CmaCh06G009840 vs. NCBI nr
Match: gi|659074888|ref|XP_008437849.1| (PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis melo])

HSP 1 Score: 213.4 bits (542), Expect = 3.2e-52
Identity = 116/168 (69.05%), Postives = 134/168 (79.76%), Query Frame = 1

Query: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPP-AATSEPEVFSSAPPTANVLQTSPIKERS 60
           M+NLPRFGRTWNRFSSLPRP+TA R +  P   A +EPEVF SA PT N LQTSP+K+R+
Sbjct: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60

Query: 61  PRITSPVRKYHSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTY 120
           PR++SPV+K+ SPP+SPKY  A  + SPRKPLSPP TYNR+DGERR+SA  SPKTFK TY
Sbjct: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120

Query: 121 TSPPRSPAKHKYST-STVQAPLSPLALPSLEKRHEPEPMVRPRSPPEI 167
            SPP SP K K+ST +TV APLSPLALP  E R EPE  +RPRSPPEI
Sbjct: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEI 168

BLAST of CmaCh06G009840 vs. NCBI nr
Match: gi|449432016|ref|XP_004133796.1| (PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 7.4e-49
Identity = 110/167 (65.87%), Postives = 131/167 (78.44%), Query Frame = 1

Query: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
           M+NLPRFGR WNRFSSLPRP TA R +  P  A +EPEVF SA PT N  QTSPIK+R+P
Sbjct: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP 60

Query: 61  RITSPVRKYHSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
           R++SPV+K+ SPP+SPKY + A + SPRKPLSPPP +NRY+GERR+SA  SPKTFK T+ 
Sbjct: 61  RLSSPVKKFSSPPSSPKY-SGAGTVSPRKPLSPPPVHNRYEGERRTSATTSPKTFKPTHI 120

Query: 121 SPPRSPAKHKYST-STVQAPLSPLALPSLEKRHEPEPMVRPRSPPEI 167
           SPP SP+K ++ST  T  APLSPLALP  + R EPE  +RPRSPPEI
Sbjct: 121 SPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEI 166

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L5T3_CUCSA5.2e-4965.87Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119290 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659074888|ref|XP_008437849.1|3.2e-5269.05PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis me... [more]
gi|449432016|ref|XP_004133796.1|7.4e-4965.87PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G009840.1CmaCh06G009840.1mRNA


The following gene(s) are paralogous to this gene:

None