CmoCh06G010180 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh06G010180
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionBnaA09g55540D protein
LocationCmo_Chr06 : 7991868 .. 7994005 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCTCCAATTTTTAAAAAATTTTCAATATTTGTAATGGCAAATCTTCCTCGTTTTGGTCGAACATGGAACCGTTTCTCTTCGCTGCCCCGCCCTGGCACGGCCCCACGGCTTGATGTTCCGCCGCCGGCTGCCACGTCGGAGCCGGAAGTTTATCCATCGGCTCCGCGCACTGCCAATGTTCTTCAAACTTCTCCTATTAAAGAAAGGTCTCCTCGAATCACTTCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCTAGCACTTCACCCCGCAAGCCACTATCTCCTCCTCCGACGTATAACCGTTACGACGGAGAACGGCGGAGCAGTGCTTTAGCTTCTCCCAAAACGTTCAAAACTACCTATACCTCTCCGCCACGATCACCGGCGAAGCATAAATATTCCACCTCCACTGTCCAAGCACCACTCTCTCCTCTGGCTCTGCCTAGCTTGGAGAAGAGACATGAACCTGAGCCAGTGGTTCGACCCAGGAGCCCACCGGAGGTTAGTTCAATCACCATTAAAATACCTTAGTTCATCAATTATAATTTATATTTAATTTATTTTTATATACATTCTTCTCATTTTTCTTGATAAGAATATAATATAATAATTTAACCTTTGACTAAAAAATTTATATTTCTTAATTAATAATTGAGCTATACTTTTTTTCTGCCAAAACATGGAGGACTTTAATATGTACATTGTACTTTCTTAATTAGTTAATATATATACGTATATGCATTTTTCGATCTTACAATCCACCTTCTTTGTGATCCAGCATTCTCGCTAACACTCGTTCACTTTTTTAATCGATGTGGGACCCTCCCAATTCATTCCCTTCGAGGCTCAACGTCCTTGCTGGCACATCGCCTCGTGTCTACCCCCTTCCGATCGATGTGGGACTCCTCTCAATCCATCCCTTTCAAGGCCCAGCGTTTTTGCTGGCACACTGCCTTGTGTCCAACCCCTTTGGAGTTTAGCGTCCTTGTTGGCATATCACCAAGAGTGTTTTGTTTTCCGACTCAACCGATGTCGGATCTCACAATCCACTCTCTTTCGGGGCCAGCATCCTCGCTGGCACTCGTTTCCTTCTCTAATCGATGTGGGACCCACCTAATCCACCCCCTTCAAGGCCCAGCATCCTTGTTGGCACTCGTTCCCTTCTCTAATCGATGTGGGACCCTCTCAATCCACACCCTTCGAGGCTCAGTGTCTTTGTTGGCACACTGCCTCGTGTCGACCCCCCTTCAGGGTTCAGCCTCCTCGTTGGCACATAGCTCGGTATGTGTCTCTGATACCAACTGTATCAGTCCAAACCTACCGCTAGCACATACTGTCTTATGTCTTATTGAGAGGTTTCCACACTCTTATAGAGAATATTTTGTTCTCCTTTCTAATTGTTGTGGGATCTCACCAAAAAAAAAAAAAAAAACTTTTACTCGTCTTAGTGTTATGATCTTATATTGTTAAACAGGTCCAACAGAAATCCGTCCTTTACCAGAAGACTACCAGCGAGAAGCCTGCGAAAACCGACCATCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAACAAACGCATCAGCAGCAAAGTGATGTAATAAACATCAAAGGAGAGAACGTAGGCGCCGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCGAGGCACTGAATGGACCGACCTCATCATTACCACTCTCTTATTTGGTGTCATATGCTAAAATAATTATGAAATAAAGCAACGATATTATAATAATTAAAGCATTTTATATTCATATTCACCATTCATATGGGATGTATTTTCAAATGGTTTTAACCATTTGGAAAAAAAAAAAAAGAGTGATTAATAATAAAACCTATTTTCAGATTATTCTATCCATTCAAAC

mRNA sequence

TCTTCTCCAATTTTTAAAAAATTTTCAATATTTGTAATGGCAAATCTTCCTCGTTTTGGTCGAACATGGAACCGTTTCTCTTCGCTGCCCCGCCCTGGCACGGCCCCACGGCTTGATGTTCCGCCGCCGGCTGCCACGTCGGAGCCGGAAGTTTATCCATCGGCTCCGCGCACTGCCAATGTTCTTCAAACTTCTCCTATTAAAGAAAGGTCTCCTCGAATCACTTCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCTAGCACTTCACCCCGCAAGCCACTATCTCCTCCTCCGACGTATAACCGTTACGACGGAGAACGGCGGAGCAGTGCTTTAGCTTCTCCCAAAACGTTCAAAACTACCTATACCTCTCCGCCACGATCACCGGCGAAGCATAAATATTCCACCTCCACTGTCCAAGCACCACTCTCTCCTCTGGCTCTGCCTAGCTTGGAGAAGAGACATGAACCTGAGCCAGTGGTTCGACCCAGGAGCCCACCGGAGGTCCAACAGAAATCCGTCCTTTACCAGAAGACTACCAGCGAGAAGCCTGCGAAAACCGACCATCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAACAAACGCATCAGCAGCAAAGTGATGTAATAAACATCAAAGGAGAGAACGTAGGCGCCGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCGAGGCACTGAATGGACCGACCTCATCATTACCACTCTCTTATTTGGTGTCATATGCTAAAATAATTATGAAATAAAGCAACGATATTATAATAATTAAAGCATTTTATATTCATATTCACCATTCATATGGGATGTATTTTCAAATGGTTTTAACCATTTGGAAAAAAAAAAAAAGAGTGATTAATAATAAAACCTATTTTCAGATTATTCTATCCATTCAAAC

Coding sequence (CDS)

ATGGCAAATCTTCCTCGTTTTGGTCGAACATGGAACCGTTTCTCTTCGCTGCCCCGCCCTGGCACGGCCCCACGGCTTGATGTTCCGCCGCCGGCTGCCACGTCGGAGCCGGAAGTTTATCCATCGGCTCCGCGCACTGCCAATGTTCTTCAAACTTCTCCTATTAAAGAAAGGTCTCCTCGAATCACTTCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCTAGCACTTCACCCCGCAAGCCACTATCTCCTCCTCCGACGTATAACCGTTACGACGGAGAACGGCGGAGCAGTGCTTTAGCTTCTCCCAAAACGTTCAAAACTACCTATACCTCTCCGCCACGATCACCGGCGAAGCATAAATATTCCACCTCCACTGTCCAAGCACCACTCTCTCCTCTGGCTCTGCCTAGCTTGGAGAAGAGACATGAACCTGAGCCAGTGGTTCGACCCAGGAGCCCACCGGAGGTCCAACAGAAATCCGTCCTTTACCAGAAGACTACCAGCGAGAAGCCTGCGAAAACCGACCATCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAACAAACGCATCAGCAGCAAAGTGATGTAATAAACATCAAAGGAGAGAACGTAGGCGCCGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCGAGGCACTGA
Homology
[Close]
BLAST of CmoCh06G010180 vs. TrEMBL
Match: A0A0A0L5T3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119290 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 4.7e-106
Identity = 217/309 (70.23%), Postives = 250/309 (80.91%), Query Frame = 1 

Query: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
           M+NLPRFGR WNRFSSLPRPGTA R +  P  A +EPEV+PSA  T N  QTSPIK+R+P
Sbjct: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP 60

Query: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
           R++SPV+K+ SPP+SPKY  A  + SPRKPLSPPP +NRY+GERR+SA  SPKTFK T+ 
Sbjct: 61  RLSSPVKKFSSPPSSPKYSGAG-TVSPRKPLSPPPVHNRYEGERRTSATTSPKTFKPTHI 120

Query: 121 SPPRSPAKHKYST-STVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTTSE 180
           SPP SP+K ++ST  T  APLSPLALP  + R EPE  +RPRSPPE++QK +LYQ TT+E
Sbjct: 121 SPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTE 180

Query: 181 KPAKTDH--RASEYSSGKPQQKQTHQQ-QSDVINIKGENVGAVMHITQSSDATETHKKKP 240
           KP KTDH  +  EY + KPQQKQ HQQ QSDVINIKGENVGAVMHITQSSD +E  KKKP
Sbjct: 181 KPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIKKKP 240

Query: 241 TVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAF-TKKPTH 300
           TV  S ENE+ +NKS+SN PGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAF +KK  H
Sbjct: 241 TVGQSKENEEKTNKSNSNYPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFGSKKSKH 300

Query: 301 ADSVHDSRH 305
            DS+HDSRH
Sbjct: 301 GDSIHDSRH 308

[Close]
BLAST of CmoCh06G010180 vs. TrEMBL
Match: A0A0A0L320_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119300 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 8.1e-26
Identity = 118/314 (37.58%), Postives = 161/314 (51.27%), Query Frame = 1 

Query: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
           MANLPR GRT  R SS+P P       VP  A  +    Y + P   ++   +P      
Sbjct: 1   MANLPRLGRTRQRLSSVPPP-------VPAAAQPAVEPKYETMPYATSITTPAP------ 60

Query: 61  RITSPVRKYPSPPTSPKYRAAAP-------STSPRKPLSPPPTYNRYDGERRSSALASPK 120
              SP R+ P P +SP  +A +P       S + +   SPP +      ERR+       
Sbjct: 61  --ASPRRESPRPLSSPSKKATSPFASRVDSSPAAKATRSPPDSIGDKYLERRNGE----- 120

Query: 121 TFKTTYTSPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLY 180
                 T+PP +PAK + + ++   PLSPLALP  +         +PR  PEV+ K ++Y
Sbjct: 121 ------TTPPLTPAKSRPAKTS---PLSPLALPRSQVITGNGTTAQPRVQPEVETKGIVY 180

Query: 181 QKTTSEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDAT---- 240
            K   EKP+K++ R SE+ SGK   ++  QQ+  V+ +KG NVGAVM + +SS       
Sbjct: 181 NKAADEKPSKSN-RQSEHGSGKSVHQK--QQKPGVMKLKGHNVGAVMEVNKSSAGYRLGG 240

Query: 241 ETHKKKPTVS------YSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDP 298
           ET KKK T        Y  E++K   K     P  +FMNSNFQ VNNS+L++SS  HRDP
Sbjct: 241 ETLKKKETEDDGDVDGYGHEDKKTGRKKKP--PISAFMNSNFQSVNNSLLFDSSCQHRDP 277

[Close]
BLAST of CmoCh06G010180 vs. TrEMBL
Match: A0A0A0L3R5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119280 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 87/229 (37.99%), Postives = 123/229 (53.71%), Query Frame = 1 

Query: 77  KYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYTSPPRSPAKHKYSTSTV 136
           +Y ++A  TS     SPP    R D +      ASP       TSPP SP+    +   +
Sbjct: 37  RYPSSARDTSLEPRSSPPRVALRRDDQPLP---ASPTYSIKKATSPPSSPSYRAPAARGI 96

Query: 137 QAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTTSEKPAKTDHRASEYSSGKP 196
            +P       ++++  + +P  +PRSP E +QK  ++ K+T EK  K+D     + S K 
Sbjct: 97  SSPTK-----TVDEYPKYKPNTQPRSP-EAKQKPGIFHKSTVEKVTKSDRY---HESSKT 156

Query: 197 QQKQTHQQQSDVINIKGENVGAVMHITQSSDATETH---KKKPTVS--------YSSENE 256
                 Q Q + INIKGENVGAVM I +SS     H   K K T           + +N 
Sbjct: 157 LSSHKGQLQPNAINIKGENVGAVMEIVESSKREGGHMIKKIKETARGILNNNDMANDQNN 216

Query: 257 KDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPT 295
           + S   +S+MP  +F+NSNFQ VNNS+LYN++L+HRDPGLHLAF++ PT
Sbjct: 217 EASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTHRDPGLHLAFSRNPT 253

[Close]
BLAST of CmoCh06G010180 vs. TrEMBL
Match: A0A0A0L8G8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119310 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.0e-17
Identity = 106/312 (33.97%), Postives = 147/312 (47.12%), Query Frame = 1 

Query: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
           MANLPR+GR W R S++ R        V  P    EPE+ P AP T   LQ  P +    
Sbjct: 1   MANLPRYGRRW-RLSTVSRLAPTATQSVQEP----EPEILPLAP-TIQTLQ--PFE---- 60

Query: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKP---LSPPPTYNRYDGERRSSALASPKTFKT 120
                    P+PP +    AA PS++P +P   +SPP    +Y+      A    K  ++
Sbjct: 61  ---------PTPPAA----AAPPSSTPGEPTPRISPPAASPKYEATVIREASPPLKPARS 120

Query: 121 TYTSPPRSPA--KHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQK 180
              SPPR     +H  S ++ Q PL P   PSL     P+       P  +  K  + QK
Sbjct: 121 PPVSPPRKSVDPRHSISPNSYQEPLKPTR-PSLSTLALPKSADVTTVPSAI--KPEVEQK 180

Query: 181 TTSEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATE----T 240
           T S K  K+D +    S+  P   Q     +  IN+ G+N+GAVM I Q SD       T
Sbjct: 181 TDSFK--KSDRQVDNVSAKPPPSLQ-----AKAINLTGDNIGAVMKINQFSDKISGGEVT 240

Query: 241 HKKKPTVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTK 300
            K +       EN+ + ++  +  P     NSNFQ VNNS++YNSS S RDPGLHL F+ 
Sbjct: 241 RKIETKTGVQQENDMEKSRRETEFPMTPITNSNFQEVNNSVMYNSSCSGRDPGLHLDFSG 277

Query: 301 KPTHADSVHDSR 304
           +   A +V  ++
Sbjct: 301 QKDEAATVDGNK 277

[Close]
BLAST of CmoCh06G010180 vs. TrEMBL
Match: A0A151TY38_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_011256 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.1e-14
Identity = 115/346 (33.24%), Postives = 161/346 (46.53%), Query Frame = 1 

Query: 1   MANLPRFGRTWNRFSSL---PRPGTAPRLDVPPPAATSEPEVYPSAPRTANVL---QTSP 60
           MAN P   R W R +S+   P P  AP    P PA T E      A RTA+     QT P
Sbjct: 1   MANPPPV-RPWFRLASIRSTPAPAPAPA-PAPAPAPTQETRPTLPAFRTASAPSSPQTHP 60

Query: 61  IKERSPRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKT 120
            +      + P +   S PTSP  +    +TSPR P SP    N +          SPKT
Sbjct: 61  TQTPQEPSSQPHKVSSSLPTSPLQKPTL-TTSPRVP-SP----NNH----------SPKT 120

Query: 121 FKTT-YTSPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLY 180
            K + +   P+    +K+++     P SPL LP  + R E      P+ P + + K+VL 
Sbjct: 121 VKQSDHNRSPKQSPNNKHTSP----PPSPLTLPPSQLRAE------PKIPDQAEPKTVLV 180

Query: 181 QKTTSEKPAKTDHRAS--EYSSGKPQQKQTHQQQSD-------VINIKGENVGAVMHITQ 240
           QKT  ++P  T H     ++   + ++K  H++ SD       VI I GEN GA M + Q
Sbjct: 181 QKTI-DRPKPTSHNGGHVKHHHDESKEKSLHRKVSDSEDSGMRVITIAGENRGAFMELIQ 240

Query: 241 S---SDATETHKK---------------KPTVSYSSENEKDSN---KSSSNMPGKSFMNS 300
           S    D    HKK                 +    + N+KD N   +S+S+ P  ++MNS
Sbjct: 241 SPKKHDPKYLHKKGTMSSNINVDGVESEGSSAEEGNVNKKDKNQKGRSASSFPMSAYMNS 300

Query: 301 NFQGVNNSILYNSSLSHRDPGLHLAFTKKP--------THADSVHD 302
           N Q VNNS+LY++S SH DPG+ L+ +KKP         H D+ HD
Sbjct: 301 NVQCVNNSLLYHTSCSHHDPGVRLSLSKKPFGEGFHIKEHVDAHHD 317

[Close]
BLAST of CmoCh06G010180 vs. NCBI nr
Match: gi|659074888|ref|XP_008437849.1| (PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis melo])

HSP 1 Score: 398.7 bits (1023), Expect = 9.3e-108
Identity = 218/309 (70.55%), Postives = 253/309 (81.88%), Query Frame = 1 

Query: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPP-AATSEPEVYPSAPRTANVLQTSPIKERS 60
           M+NLPRFGRTWNRFSSLPRP TA R +  P   A +EPEV+PSA  T N LQTSP+K+R+
Sbjct: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60

Query: 61  PRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTY 120
           PR++SPV+K+PSPP+SPKY  A  + SPRKPLSPP TYNR+DGERR+SA  SPKTFK TY
Sbjct: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120

Query: 121 TSPPRSPAKHKYST-STVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTTS 180
            SPP SP K K+ST +TV APLSPLALP  E R EPE  +RPRSPPE++QK +LYQ TT+
Sbjct: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180

Query: 181 EKPAKTDHR-ASEYSSGKPQQKQTHQQ-QSDVINIKGENVGAVMHITQSSDATETHKKKP 240
           EKP KTD+R   +Y + KPQQKQ HQQ QSDVINIKG+NVGAVMHITQSSD +E  KKKP
Sbjct: 181 EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKP 240

Query: 241 TVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAF-TKKPTH 300
           +V  S ENE+ +NKS+SN PGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLA+ +K P H
Sbjct: 241 SVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPKH 300

Query: 301 ADSVHDSRH 305
            DS+H+SRH
Sbjct: 301 GDSIHESRH 309

[Close]
BLAST of CmoCh06G010180 vs. NCBI nr
Match: gi|449432016|ref|XP_004133796.1| (PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus])

HSP 1 Score: 392.5 bits (1007), Expect = 6.7e-106
Identity = 217/309 (70.23%), Postives = 250/309 (80.91%), Query Frame = 1 

Query: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
           M+NLPRFGR WNRFSSLPRPGTA R +  P  A +EPEV+PSA  T N  QTSPIK+R+P
Sbjct: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP 60

Query: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
           R++SPV+K+ SPP+SPKY  A  + SPRKPLSPPP +NRY+GERR+SA  SPKTFK T+ 
Sbjct: 61  RLSSPVKKFSSPPSSPKYSGAG-TVSPRKPLSPPPVHNRYEGERRTSATTSPKTFKPTHI 120

Query: 121 SPPRSPAKHKYST-STVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTTSE 180
           SPP SP+K ++ST  T  APLSPLALP  + R EPE  +RPRSPPE++QK +LYQ TT+E
Sbjct: 121 SPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTE 180

Query: 181 KPAKTDH--RASEYSSGKPQQKQTHQQ-QSDVINIKGENVGAVMHITQSSDATETHKKKP 240
           KP KTDH  +  EY + KPQQKQ HQQ QSDVINIKGENVGAVMHITQSSD +E  KKKP
Sbjct: 181 KPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIKKKP 240

Query: 241 TVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAF-TKKPTH 300
           TV  S ENE+ +NKS+SN PGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAF +KK  H
Sbjct: 241 TVGQSKENEEKTNKSNSNYPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFGSKKSKH 300

Query: 301 ADSVHDSRH 305
            DS+HDSRH
Sbjct: 301 GDSIHDSRH 308

[Close]
BLAST of CmoCh06G010180 vs. NCBI nr
Match: gi|659074890|ref|XP_008437851.1| (PREDICTED: serine/arginine repetitive matrix protein 1-like [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 7.3e-28
Identity = 118/303 (38.94%), Postives = 157/303 (51.82%), Query Frame = 1 

Query: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
           MANLPRFGR   R  ++P P  A       PA     ++ P A         SP +E   
Sbjct: 1   MANLPRFGRARQRLPAVPPPVPA----AAQPAVEPRYQILPFATTITTPAPASPRRESPR 60

Query: 61  RITSPVRKYPSPPTSPKYRAAAP----STSPRKPLSPPPTYNRYDGERRSSALASPKTFK 120
            ++SP +K  SP  SPKY  +      S + +  +SPP +      ERR+          
Sbjct: 61  PLSSPPKKATSPFASPKYGDSRTRLDRSPAAKATMSPPDSVRDKYFERRNGE-------- 120

Query: 121 TTYTSPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKT 180
              T+PP SPAK + + +    PLSPLALP  +         +PR  PEV+ K ++Y KT
Sbjct: 121 ---TTPPLSPAKSRRAKTP---PLSPLALPRNQVFTGNGTTAQPRVQPEVETKGIVYNKT 180

Query: 181 TSEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSD----ATETH 240
             EKP+K++  + EY S K  QK   +Q+ +VI +KG NVGAVM I +SS       ET 
Sbjct: 181 V-EKPSKSNRSSGEYGSSKSHQK---KQKPEVIKLKGHNVGAVMEINKSSTGYRLGGETL 240

Query: 241 KKKPTV------SYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLH 290
           KK  T        Y  E++K   K     P  +FMNSNFQ VNNS+L++SS +HRDPGLH
Sbjct: 241 KKNETEDVGDVHGYGHEDKKTETK-KKEPPITAFMNSNFQSVNNSLLFDSSCNHRDPGLH 280

[Close]
BLAST of CmoCh06G010180 vs. NCBI nr
Match: gi|449432018|ref|XP_004133797.1| (PREDICTED: atherin-like [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 1.2e-25
Identity = 118/314 (37.58%), Postives = 161/314 (51.27%), Query Frame = 1 

Query: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
           MANLPR GRT  R SS+P P       VP  A  +    Y + P   ++   +P      
Sbjct: 1   MANLPRLGRTRQRLSSVPPP-------VPAAAQPAVEPKYETMPYATSITTPAP------ 60

Query: 61  RITSPVRKYPSPPTSPKYRAAAP-------STSPRKPLSPPPTYNRYDGERRSSALASPK 120
              SP R+ P P +SP  +A +P       S + +   SPP +      ERR+       
Sbjct: 61  --ASPRRESPRPLSSPSKKATSPFASRVDSSPAAKATRSPPDSIGDKYLERRNGE----- 120

Query: 121 TFKTTYTSPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLY 180
                 T+PP +PAK + + ++   PLSPLALP  +         +PR  PEV+ K ++Y
Sbjct: 121 ------TTPPLTPAKSRPAKTS---PLSPLALPRSQVITGNGTTAQPRVQPEVETKGIVY 180

Query: 181 QKTTSEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDAT---- 240
            K   EKP+K++ R SE+ SGK   ++  QQ+  V+ +KG NVGAVM + +SS       
Sbjct: 181 NKAADEKPSKSN-RQSEHGSGKSVHQK--QQKPGVMKLKGHNVGAVMEVNKSSAGYRLGG 240

Query: 241 ETHKKKPTVS------YSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDP 298
           ET KKK T        Y  E++K   K     P  +FMNSNFQ VNNS+L++SS  HRDP
Sbjct: 241 ETLKKKETEDDGDVDGYGHEDKKTGRKKKP--PISAFMNSNFQSVNNSLLFDSSCQHRDP 277

[Close]
BLAST of CmoCh06G010180 vs. NCBI nr
Match: gi|449432014|ref|XP_004133795.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 1.8e-18
Identity = 87/229 (37.99%), Postives = 123/229 (53.71%), Query Frame = 1 

Query: 77  KYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYTSPPRSPAKHKYSTSTV 136
           +Y ++A  TS     SPP    R D +      ASP       TSPP SP+    +   +
Sbjct: 37  RYPSSARDTSLEPRSSPPRVALRRDDQPLP---ASPTYSIKKATSPPSSPSYRAPAARGI 96

Query: 137 QAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTTSEKPAKTDHRASEYSSGKP 196
            +P       ++++  + +P  +PRSP E +QK  ++ K+T EK  K+D     + S K 
Sbjct: 97  SSPTK-----TVDEYPKYKPNTQPRSP-EAKQKPGIFHKSTVEKVTKSDRY---HESSKT 156

Query: 197 QQKQTHQQQSDVINIKGENVGAVMHITQSSDATETH---KKKPTVS--------YSSENE 256
                 Q Q + INIKGENVGAVM I +SS     H   K K T           + +N 
Sbjct: 157 LSSHKGQLQPNAINIKGENVGAVMEIVESSKREGGHMIKKIKETARGILNNNDMANDQNN 216

Query: 257 KDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPT 295
           + S   +S+MP  +F+NSNFQ VNNS+LYN++L+HRDPGLHLAF++ PT
Sbjct: 217 EASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTHRDPGLHLAFSRNPT 253

The following BLAST results are available for this feature:
BLAST of CmoCh06G010180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh06G010180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5T3_CUCSA4.7e-10670.23Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119290 PE=4 SV=1[more]
A0A0A0L320_CUCSA8.1e-2637.58Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119300 PE=4 SV=1[more]
A0A0A0L3R5_CUCSA1.3e-1837.99Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119280 PE=4 SV=1[more]
A0A0A0L8G8_CUCSA4.0e-1733.97Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119310 PE=4 SV=1[more]
A0A151TY38_CAJCA7.1e-1433.24Uncharacterized protein OS=Cajanus cajan GN=KK1_011256 PE=4 SV=1[more]
BLAST of CmoCh06G010180 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh06G010180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074888|ref|XP_008437849.1|9.3e-10870.55PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis me... [more]
gi|449432016|ref|XP_004133796.1|6.7e-10670.23PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus][more]
gi|659074890|ref|XP_008437851.1|7.3e-2838.94PREDICTED: serine/arginine repetitive matrix protein 1-like [Cucumis melo][more]
gi|449432018|ref|XP_004133797.1|1.2e-2537.58PREDICTED: atherin-like [Cucumis sativus][more]
gi|449432014|ref|XP_004133795.1|1.8e-1837.99PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G010180.1CmoCh06G010180.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33472FAMILY NOT NAMEDcoord: 25..293
score: 1.6
NoneNo IPR availablePANTHERPTHR33472:SF1EXTENSIN-RELATEDcoord: 25..293
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh06G010180Cucsa.259500Cucumber (Gy14) v1cgycmoB0718
CmoCh06G010180CmaCh14G021290Cucurbita maxima (Rimu)cmacmoB271
CmoCh06G010180CmaCh06G009840Cucurbita maxima (Rimu)cmacmoB832
CmoCh06G010180Cla021125Watermelon (97103) v1cmowmB793
CmoCh06G010180Csa3G119280Cucumber (Chinese Long) v2cmocuB806
CmoCh06G010180MELO3C005995Melon (DHL92) v3.5.1cmomeB755
CmoCh06G010180ClCG05G000580Watermelon (Charleston Gray)cmowcgB743
CmoCh06G010180CSPI03G07650Wild cucumber (PI 183967)cmocpiB814
CmoCh06G010180Lsi05G021560Bottle gourd (USVL1VR-Ls)cmolsiB758
CmoCh06G010180Cp4.1LG08g00670Cucurbita pepo (Zucchini)cmocpeB796
CmoCh06G010180MELO3C005995.2Melon (DHL92) v3.6.1cmomedB857
CmoCh06G010180CsaV3_3G007790Cucumber (Chinese Long) v3cmocucB0953
CmoCh06G010180Cla97C05G080630Watermelon (97103) v2cmowmbB833
CmoCh06G010180Bhi01G000384Wax gourdcmowgoB1013
CmoCh06G010180CsGy3G007790Cucumber (Gy14) v2cgybcmoB401
CmoCh06G010180Carg20912Silver-seed gourdcarcmoB1332
CmoCh06G010180Carg25713Silver-seed gourdcarcmoB0171
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh06G010180CmoCh14G021910Cucurbita moschata (Rifu)cmocmoB224
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh06G010180Cucumber (Chinese Long) v3cmocucB0976
CmoCh06G010180Watermelon (97103) v2cmowmbB810
CmoCh06G010180Wax gourdcmowgoB1002
CmoCh06G010180Cucurbita maxima (Rimu)cmacmoB026
CmoCh06G010180Cucurbita maxima (Rimu)cmacmoB829
CmoCh06G010180Cucurbita pepo (Zucchini)cmocpeB787
CmoCh06G010180Melon (DHL92) v3.6.1cmomedB836